Clone Name | rbasd21c14 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 349 bits (176), Expect = 7e-93 Identities = 437/524 (83%) Strand = Plus / Plus Query: 73 atgtgtgaagcatggtgaatgcaaatataccatgtgccatctatcttctcgaagacgttg 132 |||||||| |||||||||| || || |||||||||||| | ||||||||||||||| Sbjct: 31601666 atgtgtgatgcatggtgaacacacatgcgccatgtgccatcaaccttctcgaagacgttt 31601725 Query: 133 gtggcaatttgcttcccccaagattttcctttggtcttaaccaactccaagcatgtaaca 192 ||||| | |||||||||||| | | |||||||||||||||||| ||||||||||| || Sbjct: 31601726 gtggcgacttgcttcccccatgttcttcctttggtcttaaccacttccaagcatgtgacg 31601785 Query: 193 taaccaaggtcaccacgcacatgaacctctatgttcttaagctcaatgtttagagggaac 252 ||||||||||||||| ||||||||||||||| || || || ||||||||||| |||||| Sbjct: 31601786 taaccaaggtcaccatgcacatgaacctctacatttttcagatcaatgtttagtgggaac 31601845 Query: 253 tcataatccgcgttgcaaaccatctcccagctttgcaagaccacatcgtaaccggatatc 312 |||||||| ||| || ||||||||||||||||||| |||||| || ||||| |||||| Sbjct: 31601846 tcataatctgcgccacataccatctcccagctttgcatgaccacgtcataacctgatatc 31601905 Query: 313 cgacctgccccaggatggacaacatacacatagtctcctttagcccagatagagttcatt 372 ||||| || ||||||||| |||||| |||| ||| || |||||||| | ||||| ||| Sbjct: 31601906 cgacccgcagcaggatggataacatatacatggtcacccttagcccataaagagtacatc 31601965 Query: 373 gcagtaaaatctccattcttgaaagcgttgtagaatcgtgtatttgctgcaaggacggaa 432 || | || ||| |||||||||||||| ||||| || ||||| ||||||||||||| |||| Sbjct: 31601966 gctgcaagatcgccattcttgaaagcattgtaaaaccgtgtgtttgctgcaaggagggaa 31602025 Query: 433 gcttcagtatcctcatggaggacgtgcagatcatcccggattttggcagcacgggcataa 492 |||| ||||| |||||||||| | |||||||||||| || || ||||| |||| |||| Sbjct: 31602026 gctttggtatcttcatggaggatgcgcagatcatcccttatctttgcagcccgggaataa 31602085 Query: 493 tcttcttcccggatagccctgtccaaattacgctgaagggtttcttcgtcagctaactcg 552 ||||||||| |||| || | | ||||||||||| |||||||| |||||| | || Sbjct: 31602086 tcttcttcctggatggctgtctgtaaattacgctgcagggtttcctcgtcaattgacaaa 31602145 Query: 553 tcttcagtttttggatagccatcagcatccccacttttaacatg 596 |||||||| |||| || ||||||||||| |||||||||||||| Sbjct: 31602146 tcttcagtcgttgggtaaccatcagcatctccacttttaacatg 31602189
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 349 bits (176), Expect = 7e-93 Identities = 437/524 (83%) Strand = Plus / Plus Query: 73 atgtgtgaagcatggtgaatgcaaatataccatgtgccatctatcttctcgaagacgttg 132 |||||||| |||||||||| || || |||||||||||| | ||||||||||||||| Sbjct: 15398 atgtgtgatgcatggtgaacacacatgcgccatgtgccatcaaccttctcgaagacgttt 15457 Query: 133 gtggcaatttgcttcccccaagattttcctttggtcttaaccaactccaagcatgtaaca 192 ||||| | |||||||||||| | | |||||||||||||||||| ||||||||||| || Sbjct: 15458 gtggcgacttgcttcccccatgttcttcctttggtcttaaccacttccaagcatgtgacg 15517 Query: 193 taaccaaggtcaccacgcacatgaacctctatgttcttaagctcaatgtttagagggaac 252 ||||||||||||||| ||||||||||||||| || || || ||||||||||| |||||| Sbjct: 15518 taaccaaggtcaccatgcacatgaacctctacatttttcagatcaatgtttagtgggaac 15577 Query: 253 tcataatccgcgttgcaaaccatctcccagctttgcaagaccacatcgtaaccggatatc 312 |||||||| ||| || ||||||||||||||||||| |||||| || ||||| |||||| Sbjct: 15578 tcataatctgcgccacataccatctcccagctttgcatgaccacgtcataacctgatatc 15637 Query: 313 cgacctgccccaggatggacaacatacacatagtctcctttagcccagatagagttcatt 372 ||||| || ||||||||| |||||| |||| ||| || |||||||| | ||||| ||| Sbjct: 15638 cgacccgcagcaggatggataacatatacatggtcacccttagcccataaagagtacatc 15697 Query: 373 gcagtaaaatctccattcttgaaagcgttgtagaatcgtgtatttgctgcaaggacggaa 432 || | || ||| |||||||||||||| ||||| || ||||| ||||||||||||| |||| Sbjct: 15698 gctgcaagatcgccattcttgaaagcattgtaaaaccgtgtgtttgctgcaaggagggaa 15757 Query: 433 gcttcagtatcctcatggaggacgtgcagatcatcccggattttggcagcacgggcataa 492 |||| ||||| |||||||||| | |||||||||||| || || ||||| |||| |||| Sbjct: 15758 gctttggtatcttcatggaggatgcgcagatcatcccttatctttgcagcccgggaataa 15817 Query: 493 tcttcttcccggatagccctgtccaaattacgctgaagggtttcttcgtcagctaactcg 552 ||||||||| |||| || | | ||||||||||| |||||||| |||||| | || Sbjct: 15818 tcttcttcctggatggctgtctgtaaattacgctgcagggtttcctcgtcaattgacaaa 15877 Query: 553 tcttcagtttttggatagccatcagcatccccacttttaacatg 596 |||||||| |||| || ||||||||||| |||||||||||||| Sbjct: 15878 tcttcagtcgttgggtaaccatcagcatctccacttttaacatg 15921
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435B05 Length = 150997 Score = 349 bits (176), Expect = 7e-93 Identities = 437/524 (83%) Strand = Plus / Plus Query: 73 atgtgtgaagcatggtgaatgcaaatataccatgtgccatctatcttctcgaagacgttg 132 |||||||| |||||||||| || || |||||||||||| | ||||||||||||||| Sbjct: 114689 atgtgtgatgcatggtgaacacacatgcgccatgtgccatcaaccttctcgaagacgttt 114748 Query: 133 gtggcaatttgcttcccccaagattttcctttggtcttaaccaactccaagcatgtaaca 192 ||||| | |||||||||||| | | |||||||||||||||||| ||||||||||| || Sbjct: 114749 gtggcgacttgcttcccccatgttcttcctttggtcttaaccacttccaagcatgtgacg 114808 Query: 193 taaccaaggtcaccacgcacatgaacctctatgttcttaagctcaatgtttagagggaac 252 ||||||||||||||| ||||||||||||||| || || || ||||||||||| |||||| Sbjct: 114809 taaccaaggtcaccatgcacatgaacctctacatttttcagatcaatgtttagtgggaac 114868 Query: 253 tcataatccgcgttgcaaaccatctcccagctttgcaagaccacatcgtaaccggatatc 312 |||||||| ||| || ||||||||||||||||||| |||||| || ||||| |||||| Sbjct: 114869 tcataatctgcgccacataccatctcccagctttgcatgaccacgtcataacctgatatc 114928 Query: 313 cgacctgccccaggatggacaacatacacatagtctcctttagcccagatagagttcatt 372 ||||| || ||||||||| |||||| |||| ||| || |||||||| | ||||| ||| Sbjct: 114929 cgacccgcagcaggatggataacatatacatggtcacccttagcccataaagagtacatc 114988 Query: 373 gcagtaaaatctccattcttgaaagcgttgtagaatcgtgtatttgctgcaaggacggaa 432 || | || ||| |||||||||||||| ||||| || ||||| ||||||||||||| |||| Sbjct: 114989 gctgcaagatcgccattcttgaaagcattgtaaaaccgtgtgtttgctgcaaggagggaa 115048 Query: 433 gcttcagtatcctcatggaggacgtgcagatcatcccggattttggcagcacgggcataa 492 |||| ||||| |||||||||| | |||||||||||| || || ||||| |||| |||| Sbjct: 115049 gctttggtatcttcatggaggatgcgcagatcatcccttatctttgcagcccgggaataa 115108 Query: 493 tcttcttcccggatagccctgtccaaattacgctgaagggtttcttcgtcagctaactcg 552 ||||||||| |||| || | | ||||||||||| |||||||| |||||| | || Sbjct: 115109 tcttcttcctggatggctgtctgtaaattacgctgcagggtttcctcgtcaattgacaaa 115168 Query: 553 tcttcagtttttggatagccatcagcatccccacttttaacatg 596 |||||||| |||| || ||||||||||| |||||||||||||| Sbjct: 115169 tcttcagtcgttgggtaaccatcagcatctccacttttaacatg 115212
>dbj|AK099571.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035E10, full insert sequence Length = 1066 Score = 349 bits (176), Expect = 7e-93 Identities = 437/524 (83%) Strand = Plus / Minus Query: 73 atgtgtgaagcatggtgaatgcaaatataccatgtgccatctatcttctcgaagacgttg 132 |||||||| |||||||||| || || |||||||||||| | ||||||||||||||| Sbjct: 765 atgtgtgatgcatggtgaacacacatgcgccatgtgccatcaaccttctcgaagacgttt 706 Query: 133 gtggcaatttgcttcccccaagattttcctttggtcttaaccaactccaagcatgtaaca 192 ||||| | |||||||||||| | | |||||||||||||||||| ||||||||||| || Sbjct: 705 gtggcgacttgcttcccccatgttcttcctttggtcttaaccacttccaagcatgtgacg 646 Query: 193 taaccaaggtcaccacgcacatgaacctctatgttcttaagctcaatgtttagagggaac 252 ||||||||||||||| ||||||||||||||| || || || ||||||||||| |||||| Sbjct: 645 taaccaaggtcaccatgcacatgaacctctacatttttcagatcaatgtttagtgggaac 586 Query: 253 tcataatccgcgttgcaaaccatctcccagctttgcaagaccacatcgtaaccggatatc 312 |||||||| ||| || ||||||||||||||||||| |||||| || ||||| |||||| Sbjct: 585 tcataatctgcgccacataccatctcccagctttgcatgaccacgtcataacctgatatc 526 Query: 313 cgacctgccccaggatggacaacatacacatagtctcctttagcccagatagagttcatt 372 ||||| || ||||||||| |||||| |||| ||| || |||||||| | ||||| ||| Sbjct: 525 cgacccgcagcaggatggataacatatacatggtcacccttagcccataaagagtacatc 466 Query: 373 gcagtaaaatctccattcttgaaagcgttgtagaatcgtgtatttgctgcaaggacggaa 432 || | || ||| |||||||||||||| ||||| || ||||| ||||||||||||| |||| Sbjct: 465 gctgcaagatcgccattcttgaaagcattgtaaaaccgtgtgtttgctgcaaggagggaa 406 Query: 433 gcttcagtatcctcatggaggacgtgcagatcatcccggattttggcagcacgggcataa 492 |||| ||||| |||||||||| | |||||||||||| || || ||||| |||| |||| Sbjct: 405 gctttggtatcttcatggaggatgcgcagatcatcccttatctttgcagcccgggaataa 346 Query: 493 tcttcttcccggatagccctgtccaaattacgctgaagggtttcttcgtcagctaactcg 552 ||||||||| |||| || | | ||||||||||| |||||||| |||||| | || Sbjct: 345 tcttcttcctggatggctgtctgtaaattacgctgcagggtttcctcgtcaattgacaaa 286 Query: 553 tcttcagtttttggatagccatcagcatccccacttttaacatg 596 |||||||| |||| || ||||||||||| |||||||||||||| Sbjct: 285 tcttcagtcgttgggtaaccatcagcatctccacttttaacatg 242
>ref|NM_191261.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1134 Score = 198 bits (100), Expect = 2e-47 Identities = 268/324 (82%) Strand = Plus / Minus Query: 273 catctcccagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggac 332 ||||||||||||||||| |||||| || ||||| ||||||||||| || ||||||||| Sbjct: 498 catctcccagctttgcatgaccacgtcataacctgatatccgacccgcagcaggatggat 439 Query: 333 aacatacacatagtctcctttagcccagatagagttcattgcagtaaaatctccattctt 392 |||||| |||| ||| || |||||||| | ||||| ||| || | || ||| |||||||| Sbjct: 438 aacatatacatggtcacccttagcccataaagagtacatcgctgcaagatcgccattctt 379 Query: 393 gaaagcgttgtagaatcgtgtatttgctgcaaggacggaagcttcagtatcctcatggag 452 |||||| ||||| || ||||| ||||||||||||| |||||||| ||||| |||||||| Sbjct: 378 gaaagcattgtaaaaccgtgtgtttgctgcaaggagggaagctttggtatcttcatggag 319 Query: 453 gacgtgcagatcatcccggattttggcagcacgggcataatcttcttcccggatagccct 512 || | |||||||||||| || || ||||| |||| ||||||||||||| |||| || | Sbjct: 318 gatgcgcagatcatcccttatctttgcagcccgggaataatcttcttcctggatggctgt 259 Query: 513 gtccaaattacgctgaagggtttcttcgtcagctaactcgtcttcagtttttggatagcc 572 | ||||||||||| |||||||| |||||| | || |||||||| |||| || || Sbjct: 258 ctgtaaattacgctgcagggtttcctcgtcaattgacaaatcttcagtcgttgggtaacc 199 Query: 573 atcagcatccccacttttaacatg 596 ||||||||| |||||||||||||| Sbjct: 198 atcagcatctccacttttaacatg 175
>ref|XM_507540.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0054K20.23 mRNA Length = 984 Score = 87.7 bits (44), Expect = 4e-14 Identities = 149/184 (80%) Strand = Plus / Minus Query: 160 cctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaacc 219 |||||||||||||||| ||||| ||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 644 cctttggtcttaaccagctccaggcaggtcacatacccaagatcacctctcacatggacc 585 Query: 220 tctatgttcttaagctcaatgtttagagggaactcataatccgcgttgcaaaccatctcc 279 || | | || || ||||| | ||||||||||| || ||||||| ||| ||||||||| Sbjct: 584 tcaacatcctgcagatcaatctggagagggaactcgtagtccgcgtcgcacaccatctcc 525 Query: 280 cagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacatac 339 ||||| |||| |||| ||||| || |||||||| |||||| |||||| ||||| ||| Sbjct: 524 cagctctgcatcaccatgtcgtagcccgatatccggcctgccgaaggatgaacaacgtac 465 Query: 340 acat 343 |||| Sbjct: 464 acat 461
>ref|XM_468183.1| Oryza sativa (japonica cultivar-group), mRNA Length = 972 Score = 87.7 bits (44), Expect = 4e-14 Identities = 149/184 (80%) Strand = Plus / Minus Query: 160 cctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaacc 219 |||||||||||||||| ||||| ||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 623 cctttggtcttaaccagctccaggcaggtcacatacccaagatcacctctcacatggacc 564 Query: 220 tctatgttcttaagctcaatgtttagagggaactcataatccgcgttgcaaaccatctcc 279 || | | || || ||||| | ||||||||||| || ||||||| ||| ||||||||| Sbjct: 563 tcaacatcctgcagatcaatctggagagggaactcgtagtccgcgtcgcacaccatctcc 504 Query: 280 cagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacatac 339 ||||| |||| |||| ||||| || |||||||| |||||| |||||| ||||| ||| Sbjct: 503 cagctctgcatcaccatgtcgtagcccgatatccggcctgccgaaggatgaacaacgtac 444 Query: 340 acat 343 |||| Sbjct: 443 acat 440
>ref|XM_507017.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0054K20.23 mRNA Length = 1044 Score = 87.7 bits (44), Expect = 4e-14 Identities = 149/184 (80%) Strand = Plus / Minus Query: 160 cctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaacc 219 |||||||||||||||| ||||| ||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 637 cctttggtcttaaccagctccaggcaggtcacatacccaagatcacctctcacatggacc 578 Query: 220 tctatgttcttaagctcaatgtttagagggaactcataatccgcgttgcaaaccatctcc 279 || | | || || ||||| | ||||||||||| || ||||||| ||| ||||||||| Sbjct: 577 tcaacatcctgcagatcaatctggagagggaactcgtagtccgcgtcgcacaccatctcc 518 Query: 280 cagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacatac 339 ||||| |||| |||| ||||| || |||||||| |||||| |||||| ||||| ||| Sbjct: 517 cagctctgcatcaccatgtcgtagcccgatatccggcctgccgaaggatgaacaacgtac 458 Query: 340 acat 343 |||| Sbjct: 457 acat 454
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 87.7 bits (44), Expect = 4e-14 Identities = 149/184 (80%) Strand = Plus / Plus Query: 160 cctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaacc 219 |||||||||||||||| ||||| ||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 33514901 cctttggtcttaaccagctccaggcaggtcacatacccaagatcacctctcacatggacc 33514960 Query: 220 tctatgttcttaagctcaatgtttagagggaactcataatccgcgttgcaaaccatctcc 279 || | | || || ||||| | ||||||||||| || ||||||| ||| ||||||||| Sbjct: 33514961 tcaacatcctgcagatcaatctggagagggaactcgtagtccgcgtcgcacaccatctcc 33515020 Query: 280 cagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacatac 339 ||||| |||| |||| ||||| || |||||||| |||||| |||||| ||||| ||| Sbjct: 33515021 cagctctgcatcaccatgtcgtagcccgatatccggcctgccgaaggatgaacaacgtac 33515080 Query: 340 acat 343 |||| Sbjct: 33515081 acat 33515084
>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0054K20 Length = 153584 Score = 87.7 bits (44), Expect = 4e-14 Identities = 149/184 (80%) Strand = Plus / Plus Query: 160 cctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaacc 219 |||||||||||||||| ||||| ||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 89776 cctttggtcttaaccagctccaggcaggtcacatacccaagatcacctctcacatggacc 89835 Query: 220 tctatgttcttaagctcaatgtttagagggaactcataatccgcgttgcaaaccatctcc 279 || | | || || ||||| | ||||||||||| || ||||||| ||| ||||||||| Sbjct: 89836 tcaacatcctgcagatcaatctggagagggaactcgtagtccgcgtcgcacaccatctcc 89895 Query: 280 cagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacatac 339 ||||| |||| |||| ||||| || |||||||| |||||| |||||| ||||| ||| Sbjct: 89896 cagctctgcatcaccatgtcgtagcccgatatccggcctgccgaaggatgaacaacgtac 89955 Query: 340 acat 343 |||| Sbjct: 89956 acat 89959
>dbj|AK104526.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H04, full insert sequence Length = 972 Score = 87.7 bits (44), Expect = 4e-14 Identities = 149/184 (80%) Strand = Plus / Minus Query: 160 cctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaacc 219 |||||||||||||||| ||||| ||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 623 cctttggtcttaaccagctccaggcaggtcacatacccaagatcacctctcacatggacc 564 Query: 220 tctatgttcttaagctcaatgtttagagggaactcataatccgcgttgcaaaccatctcc 279 || | | || || ||||| | ||||||||||| || ||||||| ||| ||||||||| Sbjct: 563 tcaacatcctgcagatcaatctggagagggaactcgtagtccgcgtcgcacaccatctcc 504 Query: 280 cagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacatac 339 ||||| |||| |||| ||||| || |||||||| |||||| |||||| ||||| ||| Sbjct: 503 cagctctgcatcaccatgtcgtagcccgatatccggcctgccgaaggatgaacaacgtac 444 Query: 340 acat 343 |||| Sbjct: 443 acat 440
>dbj|AK104117.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-A04, full insert sequence Length = 984 Score = 87.7 bits (44), Expect = 4e-14 Identities = 149/184 (80%) Strand = Plus / Minus Query: 160 cctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaacc 219 |||||||||||||||| ||||| ||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 644 cctttggtcttaaccagctccaggcaggtcacatacccaagatcacctctcacatggacc 585 Query: 220 tctatgttcttaagctcaatgtttagagggaactcataatccgcgttgcaaaccatctcc 279 || | | || || ||||| | ||||||||||| || ||||||| ||| ||||||||| Sbjct: 584 tcaacatcctgcagatcaatctggagagggaactcgtagtccgcgtcgcacaccatctcc 525 Query: 280 cagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacatac 339 ||||| |||| |||| ||||| || |||||||| |||||| |||||| ||||| ||| Sbjct: 524 cagctctgcatcaccatgtcgtagcccgatatccggcctgccgaaggatgaacaacgtac 465 Query: 340 acat 343 |||| Sbjct: 464 acat 461
>dbj|AK061452.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-F07, full insert sequence Length = 1044 Score = 87.7 bits (44), Expect = 4e-14 Identities = 149/184 (80%) Strand = Plus / Minus Query: 160 cctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaacc 219 |||||||||||||||| ||||| ||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 637 cctttggtcttaaccagctccaggcaggtcacatacccaagatcacctctcacatggacc 578 Query: 220 tctatgttcttaagctcaatgtttagagggaactcataatccgcgttgcaaaccatctcc 279 || | | || || ||||| | ||||||||||| || ||||||| ||| ||||||||| Sbjct: 577 tcaacatcctgcagatcaatctggagagggaactcgtagtccgcgtcgcacaccatctcc 518 Query: 280 cagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacatac 339 ||||| |||| |||| ||||| || |||||||| |||||| |||||| ||||| ||| Sbjct: 517 cagctctgcatcaccatgtcgtagcccgatatccggcctgccgaaggatgaacaacgtac 458 Query: 340 acat 343 |||| Sbjct: 457 acat 454
>emb|AL646097.25| Mouse DNA sequence from clone RP23-338M9 on chromosome 11 Contains the 3' end of the Gas7 gene for growth arrest specific 7, the Rcvrn gene for recoverin, the Glp2r gene for glucagon-like peptide 2 receptor, a novel gene and the gene for a novel protein (1110001P11Rik), complete sequence Length = 212636 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 412 gtatttgctgcaaggacggaagcttc 437 ||||||||||| |||||||||||||| Sbjct: 36191 gtatttgctgcgaggacggaagcttc 36166
>emb|AL355607.10| Human DNA sequence from clone RP11-367F23 on chromosome 9 Contains a novel gene, complete sequence Length = 113308 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 ccatgtgccatctatcttctc 122 ||||||||||||||||||||| Sbjct: 60846 ccatgtgccatctatcttctc 60826
>gb|AC132872.17| Homo sapiens chromosome 17, clone RP13-516M14, complete sequence Length = 171569 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 ataaaccaccagaaagtgtca 57 ||||||||||||||||||||| Sbjct: 17052 ataaaccaccagaaagtgtca 17032
>gb|AC021580.9| Homo sapiens chromosome 9, clone RP11-1091N2, complete sequence Length = 210557 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 ccatgtgccatctatcttctc 122 ||||||||||||||||||||| Sbjct: 112599 ccatgtgccatctatcttctc 112579
>gb|AC132938.9| Homo sapiens chromosome 17, clone RP13-20L14, complete sequence Length = 154252 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 ataaaccaccagaaagtgtca 57 ||||||||||||||||||||| Sbjct: 137894 ataaaccaccagaaagtgtca 137874
>dbj|BS000076.1| Pan troglodytes chromosome 22 clone:PTB-096O09, map 22, complete sequences Length = 186284 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 76 tgtgaagcatggtgaatgcaaatat 100 |||||||||||||||| |||||||| Sbjct: 152778 tgtgaagcatggtgaaggcaaatat 152754
>dbj|BS000077.1| Pan troglodytes chromosome 22 clone:RP43-076N07, map 22, complete sequences Length = 186185 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 76 tgtgaagcatggtgaatgcaaatat 100 |||||||||||||||| |||||||| Sbjct: 3911 tgtgaagcatggtgaaggcaaatat 3887
>dbj|AP001683.1| Homo sapiens genomic DNA, chromosome 21q, section 27/105 Length = 340000 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 76 tgtgaagcatggtgaatgcaaatat 100 |||||||||||||||| |||||||| Sbjct: 218781 tgtgaagcatggtgaaggcaaatat 218757
>dbj|AP000951.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B650I18, LL56-APP region, complete sequence Length = 41170 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 76 tgtgaagcatggtgaatgcaaatat 100 |||||||||||||||| |||||||| Sbjct: 18432 tgtgaagcatggtgaaggcaaatat 18408
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 ccaagattttcctttggtct 169 |||||||||||||||||||| Sbjct: 1089899 ccaagattttcctttggtct 1089918
>ref|XM_389780.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09604.1) partial mRNA Length = 1908 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 aaagcgttgtagaatcgtgt 413 |||||||||||||||||||| Sbjct: 1070 aaagcgttgtagaatcgtgt 1051
>ref|XM_571336.1| Cryptococcus neoformans var. neoformans JEC21 phosphatidylinositol 3-kinase TOR1 (CNF03740) partial mRNA Length = 7168 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 ccaagattttcctttggtct 169 |||||||||||||||||||| Sbjct: 6262 ccaagattttcctttggtct 6243
>emb|AL353732.14| Human DNA sequence from clone RP11-354P17 on chromosome 9 Contains the IFNA6 gene for interferon, alpha 6, the IFNA13 gene for interferon, alpha 13, the IFNA2 gene for interferon, alpha 2, the IFNA8 gene for interferon, alpha 8, an interferon, omega 1 (IFNW1) pseudogene, the IFNA1 gene for interferon, alpha 1, 4 interferon pseudogenes, the 3' end of a novel gene and a CpG island, complete sequence Length = 173211 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 agtgtcagcattttattctt 70 |||||||||||||||||||| Sbjct: 8348 agtgtcagcattttattctt 8367
>emb|AL157788.16| Human DNA sequence from clone RP11-498J9 on chromosome 10 Contains a pseudogene similar to part of lactate dehydrogenase A (LDH1) (LDHD), two novel genes, the NANOS1 gene for nanos homolog 1 (Drosophila) and one CpG island, complete sequence Length = 119104 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 aaatataccatgtgccatct 114 |||||||||||||||||||| Sbjct: 5758 aaatataccatgtgccatct 5739
>emb|Z72388.1|NPGPROTB N.plumbaginifolia mRNA for G protein beta-subunit-like protein Length = 1261 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 ggtgaatgcaaatataccat 105 |||||||||||||||||||| Sbjct: 482 ggtgaatgcaaatataccat 501
>emb|AL671560.7| Mouse DNA sequence from clone RP23-149A5 on chromosome 1 Contains the 3' end of the Nrp2 gene for neuropilin 2, complete sequence Length = 157987 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 276 ctcccagctttgcaagaccacatc 299 |||||||||||||||||| ||||| Sbjct: 151648 ctcccagctttgcaagactacatc 151671
>emb|CR376737.4| Zebrafish DNA sequence from clone CH211-14G13 in linkage group 24, complete sequence Length = 158366 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 572 catcagcatccccactttta 591 |||||||||||||||||||| Sbjct: 73475 catcagcatccccactttta 73494
>gb|AF098973.1|AF098973 Filobasidiella neoformans var. neoformans phosphatidylinositol 3-kinase TOR1 (TOR1) mRNA, partial cds Length = 3249 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 ccaagattttcctttggtct 169 |||||||||||||||||||| Sbjct: 2431 ccaagattttcctttggtct 2412
>gb|AF098972.1|AF098972 Cryptococcus neoformans var. grubii phosphatidylinositol 3-kinase TOR1 (TOR1) gene, complete cds Length = 9364 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 ccaagattttcctttggtct 169 |||||||||||||||||||| Sbjct: 7970 ccaagattttcctttggtct 7951
>gb|AC126049.3| Mus musculus BAC clone RP23-224I16 from 1, complete sequence Length = 224972 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 cttcccccaagattttcctt 163 |||||||||||||||||||| Sbjct: 125767 cttcccccaagattttcctt 125786
>emb|AL606925.16| Mouse DNA sequence from clone RP23-12J1 on chromosome 4, complete sequence Length = 239244 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 gatgtgtgaagcatggtgaa 91 |||||||||||||||||||| Sbjct: 123615 gatgtgtgaagcatggtgaa 123634 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,449,695 Number of Sequences: 3902068 Number of extensions: 5449695 Number of successful extensions: 90864 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90723 Number of HSP's gapped (non-prelim): 131 length of query: 650 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 627 effective length of database: 17,143,297,704 effective search space: 10748847660408 effective search space used: 10748847660408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)