>DOK1_MOUSE (P97465) Docking protein 1 (Downstream of tyrosine kinase 1)|
           (p62(dok))
          Length = 482

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
 Frame = -1

Query: 394 ARPRGEVALPGR-LDEWDLPWCPP--------LPYFYPVEETLIPEPFSPEAIPISVAIA 242
           A PRG   LP    D W   WC          LPY    ++  +P P SP+  P     A
Sbjct: 370 APPRGLYDLPQEPRDAW---WCQARLKEEGYELPYNPATDDYAVPPPRSPKPAP-----A 421

Query: 241 NKFQGTIIPVSAPCRG 194
            K QG I+P S   RG
Sbjct: 422 PKPQGLILPESGTTRG 437

>NOS3_BOVIN (P29473) Nitric-oxide synthase, endothelial (EC 1.14.13.39)|
           (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS)
           (eNOS) (Constitutive NOS) (cNOS)
          Length = 1204

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = +1

Query: 49  AYDHNQDHIMGERINHIAAVEDLSPEEELLRSWRKEATLMEMNPGTLTRPGRVPTQELWF 228
           A D   + + GER+  +   ++L  +EE  R W K A         +    +   Q+++ 
Sbjct: 667 AVDTRLEELGGERLLQLGQGDELCGQEEAFRGWAKAAFQASCETFCVGEEAKAAAQDIFS 726

Query: 229 PETCW 243
           P+  W
Sbjct: 727 PKRSW 731

>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID|
           domain-containing protein 1A) (SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin subfamily F member 1) (SWI-SNF complex protein
           p270) (B120) (SWI-like pr
          Length = 2285

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 111 RPQPRGGTTPFMEEGSNVDGDESGDTYP 194
           RPQP GGT P+ ++     G + G  YP
Sbjct: 391 RPQPYGGTNPYSQQQGPPSGPQQGHGYP 418

>PRIO2_TRAST (P40243) Major prion protein 2 precursor (PrP) (Major|
           scrapie-associated fibril protein 2) (CD230 antigen)
          Length = 256

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 102 CCRRPQPRGGTTPFMEEGSNVDGDES--GDTYPPRQGADTG 218
           C +RP+P GG   +   GS   G  S  G+ YPP++G D G
Sbjct: 24  CKKRPKPGGG---WNTGGSRYPGQGSPGGNRYPPQEGGDWG 61

>BAGP_DROME (P22809) Homeobox protein bagpipe (NK-3)|
          Length = 382

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 328 PLPYFYPVEETLIPEPFSPEAIPISVAIANKFQGTIIPVSAP 203
           P PYFYP  +  +P+P  P     S   A+    + +P+  P
Sbjct: 302 PFPYFYPQHK--VPQPIPPPTQSSSFVTASSASSSPVPIPIP 341

>ARAB_YERPS (Q66AF7) Ribulokinase (EC 2.7.1.16)|
          Length = 563

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 390 RARWQPGWGGAPPLALLRA 446
           ++ W P WGG PP A L A
Sbjct: 212 KSLWHPSWGGLPPRAFLAA 230

>ARAB_YERPE (P58543) Ribulokinase (EC 2.7.1.16)|
          Length = 563

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 390 RARWQPGWGGAPPLALLRA 446
           ++ W P WGG PP A L A
Sbjct: 212 KSLWHPSWGGLPPRAFLAA 230

>SYI_MYCS5 (Q4A5K5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 895

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
 Frame = +1

Query: 13  RENIMGSP*INIAYDHNQDHIMGERI---------NH------IAAVEDLSPEEELLRSW 147
           R+   G P I I YD N+  ++ E I         NH       + V++L PE+   R+W
Sbjct: 457 RQRTWGVP-IIIFYDENEKPVINEEIFDHVIDLVANHGTDIWFSSTVDELLPEKYRNRNW 515

Query: 148 RKEATLMEM 174
            KE  +M++
Sbjct: 516 TKENDIMDV 524

>NOS3_PIG (Q28969) Nitric-oxide synthase, endothelial (EC 1.14.13.39)|
           (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS)
           (eNOS) (Constitutive NOS) (cNOS)
          Length = 1204

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/65 (20%), Positives = 28/65 (43%)
 Frame = +1

Query: 49  AYDHNQDHIMGERINHIAAVEDLSPEEELLRSWRKEATLMEMNPGTLTRPGRVPTQELWF 228
           A D   + + GER+  +   ++L  +EE  R W + A         +    +   ++++ 
Sbjct: 667 AVDTRLEELGGERLLQLGQGDELCGQEEAFRGWAQAAFQASCETFCVGEDAKAAARDIFS 726

Query: 229 PETCW 243
           P+  W
Sbjct: 727 PKRSW 731

>YHFR_ECO57 (Q8XA81) Hypothetical protein yfhR|
          Length = 284

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 319 YFYPVEETLIPEPFSPEAIPISVAIANKFQGTIIPVS 209
           ++YP ++   P+P+S E++  +     + QG  IP S
Sbjct: 34  FYYPDDKIYGPDPWSAESVEFTAKDGTRLQGWFIPSS 70

>YFHR_ECOLI (P77538) Hypothetical protein yfhR|
          Length = 284

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 319 YFYPVEETLIPEPFSPEAIPISVAIANKFQGTIIPVS 209
           ++YP ++   P+P+S E++  +     + QG  IP S
Sbjct: 34  FYYPDDKIYGPDPWSAESVEFTAKDGTRLQGWFIPSS 70


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,700,010
Number of Sequences: 219361
Number of extensions: 1464812
Number of successful extensions: 4133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4132
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)