>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13,
             complete sequence
          Length = 102842

 Score =  381 bits (192), Expect = e-102
 Identities = 294/324 (90%), Gaps = 3/324 (0%)
 Strand = Plus / Minus

                                                                         
Query: 1     atacatagaagaagggaaaacatcatgggatcaccctagattaacatagcctatgatcac 60
             |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77076 atacatagaagaagaggaaacatcatgggatcaccctagattaacatagcctatgatcac 77017

                                                                         
Query: 61    aatcaagatcacatcatgggagagagaattaaccacatagctgctgtagaagacctcagc 120
             ||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||  ||
Sbjct: 77016 aatcaagatcacatcatgggagagacaattaaccacatagctattgtagaagaccttggc 76957

                                                                         
Query: 121   cccgaggaggaactact-ccg-ttcatggaggaaggaagcaacgttgatggagatgaatc 178
             ||||||||||||||||| ||| |||||||||| ||| |||||| | ||||||||||||||
Sbjct: 76956 cccgaggaggaactactgccgcttcatggagggagggagcaacatcgatggagatgaatc 76897

                                                                         
Query: 179   cggggacacttacccgccccggcagggtgccgacacaggaattatggttccctgaaactt 238
             ||||| || || |||| ||| ||||||||||| || ||||||| |||  ||| |||||||
Sbjct: 76896 cgggggcaattccccgtccccgcagggtgccggcaaaggaattctggacccccgaaactt 76837

                                                                         
Query: 239   gttggcgatggcgacggagatcggaattgcttctggagaaaagggttctggaatcagggt 298
             ||||||||||||| ||||||| |||||||||| |||||||||||||||  ||||||||||
Sbjct: 76836 gttggcgatggcggcggagattggaattgcttgtggagaaaagggttccagaatcagggt 76777

                                     
Query: 299   ttcctccacg-gggtaaaaatagg 321
             |||||||||| |||||||||||||
Sbjct: 76776 ttcctccacgagggtaaaaatagg 76753



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 71/82 (86%), Gaps = 1/82 (1%)
 Strand = Plus / Minus

                                                                         
Query: 428   tctggctctccttcgggcgtttggagtcttctgaaacgctgattttttatatattttctg 487
             |||||| |||||||||   | |||||||||| | || ||||||||||| |||||||| ||
Sbjct: 76647 tctggccctccttcggctatatggagtcttcaggaatgctgattttttttatattttttg 76588

                                   
Query: 488   tggaattttt-gggcactgtaa 508
             |||||||||| |||||||||||
Sbjct: 76587 tggaatttttcgggcactgtaa 76566



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 464   cgctgattttttatatattttctgtggaattttt 497
             ||||||||||||||||||||| | |||| |||||
Sbjct: 68230 cgctgattttttatatattttttctggatttttt 68263

>emb|X64100.1|SCR1731 S.cereale DNA for dispersed repeat sequence (R173-1)
          Length = 6676

 Score =  139 bits (70), Expect = 1e-29
 Identities = 94/102 (92%)
 Strand = Plus / Minus

                                                                        
Query: 1    atacatagaagaagggaaaacatcatgggatcaccctagattaacatagcctatgatcac 60
            ||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 5267 atacatagaggaaggggaaatatcatgggatcaccctagattaacatagcctatgatcac 5208

                                                      
Query: 61   aatcaagatcacatcatgggagagagaattaaccacatagct 102
            ||  |||||||||||||||||||||||  |||||| ||||||
Sbjct: 5207 aacgaagatcacatcatgggagagagagataaccatatagct 5166



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 1   atacatagaagaagggaaaacatcatgggatc 32
           ||||||||| |||||| ||| |||||||||||
Sbjct: 256 atacatagaggaaggggaaatatcatgggatc 225

>gb|DQ175900.1| Hordeum vulgare subsp. vulgare clone 28-36A-LB flanking T-DNA
           insertion sequence
          Length = 325

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 73/82 (89%), Gaps = 1/82 (1%)
 Strand = Plus / Minus

                                                                       
Query: 428 tctggctctccttcgggcgtttggagtcttctgaaacgctgatttttt-atatattttct 486
           ||||||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 84  tctggctctccttcgggggtttggagttttctggaacgctgattttttaatatattttct 25

                                 
Query: 487 gtggaatttttgggcactgtaa 508
            || | |||| ||||| |||||
Sbjct: 24  ttgaatttttcgggcaatgtaa 3



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 323 caaaggggggcaccaggggaggtcccactcgtccaggcggcctggtagcgcgacctcccc 382
           ||||| |||||||||| |||||||||||||  ||||||||||| || ||||| |||||||
Sbjct: 187 caaagcggggcaccagtggaggtcccactctcccaggcggcctagtggcgcggcctcccc 128

            
Query: 383 c 383
           |
Sbjct: 127 c 127

>emb|BX936429.8| Zebrafish DNA sequence from clone DKEY-224E22 in linkage group 18,
              complete sequence
          Length = 158832

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 470    ttttttatatattttctgtgga 491
              ||||||||||||||||||||||
Sbjct: 129529 ttttttatatattttctgtgga 129550

>emb|BX072540.8| Zebrafish DNA sequence from clone CH211-103M6 in linkage group 18,
             complete sequence
          Length = 178664

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 470   ttttttatatattttctgtgga 491
             ||||||||||||||||||||||
Sbjct: 23575 ttttttatatattttctgtgga 23596

>gb|AC102501.9| Mus musculus chromosome 5, clone RP24-315J23, complete sequence
          Length = 207791

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 11     gaagggaaaacatcatgggat 31
              |||||||||||||||||||||
Sbjct: 194369 gaagggaaaacatcatgggat 194349

>ref|XM_590168.2| PREDICTED: Bos taurus hypothetical LOC512621, transcript variant 1
            (LOC512621), mRNA
          Length = 3048

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 330  gggcaccaggggaggtcccac 350
            |||||||||||||||||||||
Sbjct: 2883 gggcaccaggggaggtcccac 2903

>ref|XM_952266.1| Neurospora crassa OR74A hypothetical protein (NCU06468.1) partial mRNA
          Length = 14979

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 223   tggttccctgaaacttgttggcgatggcgacgg 255
             ||||| |||||| || |||||||||||||||||
Sbjct: 11887 tggtttcctgaagctcgttggcgatggcgacgg 11855

>ref|XM_326322.1| Neurospora crassa OR74A hypothetical protein (NCU06468.1) partial mRNA
          Length = 14979

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 223   tggttccctgaaacttgttggcgatggcgacgg 255
             ||||| |||||| || |||||||||||||||||
Sbjct: 11887 tggtttcctgaagctcgttggcgatggcgacgg 11855

>dbj|AP002340.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2011F17, complete
              sequence
          Length = 165747

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1      atacatagaagaagggaaaac 21
              |||||||||||||||||||||
Sbjct: 154752 atacatagaagaagggaaaac 154772

>ref|NM_186814.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1350

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 344 gtcccactcgtccaggcggc 363
           ||||||||||||||||||||
Sbjct: 534 gtcccactcgtccaggcggc 515

>gb|BC106411.1| Xenopus laevis cDNA clone IMAGE:7981224
          Length = 1517

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 470  ttttttatatattttctgtg 489
            ||||||||||||||||||||
Sbjct: 1371 ttttttatatattttctgtg 1390

>gb|AC102129.9| Mus musculus chromosome 7, clone RP23-220N19, complete sequence
          Length = 178200

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 481    ttttctgtggaatttttggg 500
              ||||||||||||||||||||
Sbjct: 130154 ttttctgtggaatttttggg 130135

>emb|Z68014.1|CEW04G3 Caenorhabditis elegans Cosmid W04G3, complete sequence
          Length = 32158

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 473  tttatatattttctgtggaa 492
            ||||||||||||||||||||
Sbjct: 9490 tttatatattttctgtggaa 9471

>gb|AC004862.1| Homo sapiens PAC clone RP4-697H17 from 7, complete sequence
          Length = 158811

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    gcagggtgccgacacaggaa 219
              ||||||||||||||||||||
Sbjct: 122442 gcagggtgccgacacaggaa 122423

>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 467    tgattttttatatattttct 486
              ||||||||||||||||||||
Sbjct: 610332 tgattttttatatattttct 610313

>gb|AC068909.31| Mus musculus BAC Clone 407f20 RPCI-23, complete sequence
          Length = 196383

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 481    ttttctgtggaatttttggg 500
              ||||||||||||||||||||
Sbjct: 145624 ttttctgtggaatttttggg 145605

>emb|CR354535.11| Zebrafish DNA sequence from clone CH211-199M16 in linkage group 25,
              complete sequence
          Length = 225139

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 471    tttttatatattttctgtggaatttttg 498
              ||||||| |||||| |||||||||||||
Sbjct: 123954 tttttatctattttatgtggaatttttg 123927

>emb|AL954254.2| Pan troglodytes chromosome 22 clone PTB-153H02 map 22q22.3, complete
             sequence
          Length = 182818

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   gctgattttttatatatttt 484
             ||||||||||||||||||||
Sbjct: 49112 gctgattttttatatatttt 49093

>emb|BX294110.8| Zebrafish DNA sequence from clone DKEYP-19H3 in linkage group 25,
             complete sequence
          Length = 176023

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 471   tttttatatattttctgtggaatttttg 498
             ||||||| |||||| |||||||||||||
Sbjct: 99440 tttttatctattttatgtggaatttttg 99467

>gb|AC012472.7| Homo sapiens chromosome 10 clone RP11-71O9, complete sequence
          Length = 148279

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   caccaggggaggtcccactc 352
             ||||||||||||||||||||
Sbjct: 59301 caccaggggaggtcccactc 59320

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 344     gtcccactcgtccaggcggc 363
               ||||||||||||||||||||
Sbjct: 7999062 gtcccactcgtccaggcggc 7999043

>gb|AC158550.4| Mus musculus chromosome 7, clone RP24-192B7, complete sequence
          Length = 169846

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 481   ttttctgtggaatttttggg 500
             ||||||||||||||||||||
Sbjct: 67642 ttttctgtggaatttttggg 67623

>dbj|AP003754.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1341_A08
          Length = 128955

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   gtcccactcgtccaggcggc 363
             ||||||||||||||||||||
Sbjct: 37259 gtcccactcgtccaggcggc 37240

>dbj|AP004382.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0418E08
          Length = 141040

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 344    gtcccactcgtccaggcggc 363
              ||||||||||||||||||||
Sbjct: 115421 gtcccactcgtccaggcggc 115402

>emb|CR925799.3| Wallaby DNA sequence from clone GRWB-66O5, complete sequence
          Length = 165490

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    gctgctgtagaagacctcag 119
              ||||||||||||||||||||
Sbjct: 137597 gctgctgtagaagacctcag 137578

>gb|AC125143.4| Mus musculus BAC clone RP24-342H13 from 17, complete sequence
          Length = 219259

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 164    tgatggagatgaatccggggacac 187
              ||||||||||||||| ||||||||
Sbjct: 121224 tgatggagatgaatcaggggacac 121247

>gb|AC068908.21| Mus musculus BAC Clone 389o18 RPCI-23, complete sequence
          Length = 198576

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 481   ttttctgtggaatttttggg 500
             ||||||||||||||||||||
Sbjct: 78250 ttttctgtggaatttttggg 78231

>gb|AC168090.3| Mus musculus BAC clone RP24-272N5 from chromosome 17, complete
            sequence
          Length = 157940

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 164  tgatggagatgaatccggggacac 187
            ||||||||||||||| ||||||||
Sbjct: 6187 tgatggagatgaatcaggggacac 6210

>gb|AC162924.5| Mus musculus BAC clone RP23-292J21 from chromosome 6, complete sequence
          Length = 179209

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     catagaagaagggaaaacat 23
             ||||||||||||||||||||
Sbjct: 43331 catagaagaagggaaaacat 43312


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,712,278
Number of Sequences: 3902068
Number of extensions: 4712278
Number of successful extensions: 108686
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108564
Number of HSP's gapped (non-prelim): 120
length of query: 508
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 486
effective length of database: 17,147,199,772
effective search space: 8333539089192
effective search space used: 8333539089192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)