ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20n08 |
|---|---|
| Clone Library Name | barley_pub |
>TUB_HUMAN (P50607) Tubby protein homolog| Length = 506 Score = 103 bits (257), Expect = 4e-22 Identities = 47/89 (52%), Positives = 66/89 (74%) Frame = -2 Query: 593 LKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDL 414 L+NK+P W++ Q + LNF GRVT ASVKNFQ++ +D D +++QFG++ +D+ Sbjct: 425 LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDP-------DYIVMQFGRVAEDV 477 Query: 413 FTMDYRYPISAFQSFAICLSSFDTKIACE 327 FTMDY YP+ A Q+FAI LSSFD+K+ACE Sbjct: 478 FTMDYNYPLCALQAFAIALSSFDSKLACE 506
>TUB_RAT (O88808) Tubby protein homolog| Length = 505 Score = 103 bits (257), Expect = 4e-22 Identities = 47/89 (52%), Positives = 66/89 (74%) Frame = -2 Query: 593 LKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDL 414 L+NK+P W++ Q + LNF GRVT ASVKNFQ++ +D D +++QFG++ +D+ Sbjct: 424 LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDP-------DYIVMQFGRVAEDV 476 Query: 413 FTMDYRYPISAFQSFAICLSSFDTKIACE 327 FTMDY YP+ A Q+FAI LSSFD+K+ACE Sbjct: 477 FTMDYNYPLCALQAFAIALSSFDSKLACE 505
>TUB_MOUSE (P50586) Tubby protein| Length = 505 Score = 103 bits (257), Expect = 4e-22 Identities = 47/89 (52%), Positives = 66/89 (74%) Frame = -2 Query: 593 LKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDL 414 L+NK+P W++ Q + LNF GRVT ASVKNFQ++ +D D +++QFG++ +D+ Sbjct: 424 LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDP-------DYIVMQFGRVAEDV 476 Query: 413 FTMDYRYPISAFQSFAICLSSFDTKIACE 327 FTMDY YP+ A Q+FAI LSSFD+K+ACE Sbjct: 477 FTMDYNYPLCALQAFAIALSSFDSKLACE 505
>TULP1_MOUSE (Q9Z273) Tubby-related protein 1 (Tubby-like protein 1)| Length = 543 Score = 102 bits (255), Expect = 6e-22 Identities = 50/89 (56%), Positives = 64/89 (71%) Frame = -2 Query: 593 LKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDL 414 L NK P W+E + LNF+GRVT ASVKNFQ+V +DD D ++LQFG++ +D Sbjct: 462 LHNKPPIWNEDSGSYTLNFQGRVTQASVKNFQIVHADDP-------DYIVLQFGRVAEDA 514 Query: 413 FTMDYRYPISAFQSFAICLSSFDTKIACE 327 FT+DYRYP+ A Q+FAI LSSFD K+ACE Sbjct: 515 FTLDYRYPLCALQAFAIALSSFDGKLACE 543
>TULP3_HUMAN (O75386) Tubby-related protein 3 (Tubby-like protein 3)| Length = 442 Score = 102 bits (254), Expect = 8e-22 Identities = 49/89 (55%), Positives = 64/89 (71%) Frame = -2 Query: 593 LKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDL 414 L NK+P W+ Q + LNFRGRVT ASVKNFQLV +D D +++QFG++ D+ Sbjct: 361 LHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQLVHKNDP-------DYIVMQFGRVADDV 413 Query: 413 FTMDYRYPISAFQSFAICLSSFDTKIACE 327 FT+DY YP+ A Q+FAI LSSFD+K+ACE Sbjct: 414 FTLDYNYPLCAVQAFAISLSSFDSKLACE 442
>TULP2_MOUSE (P46686) Tubby-related protein 2 (Tubby-like protein 2) (P4-6| protein) (Fragment) Length = 564 Score = 102 bits (253), Expect = 1e-21 Identities = 48/90 (53%), Positives = 65/90 (72%) Frame = -2 Query: 596 VLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKD 417 +L+NK+P W ++ + LNF GRVT ASVKNFQ+V D E D ++LQFG++ + Sbjct: 482 LLQNKAPSWSDESGAYVLNFHGRVTRASVKNFQIVHPD-------EPDHLVLQFGRVAPN 534 Query: 416 LFTMDYRYPISAFQSFAICLSSFDTKIACE 327 +FTMD+RYP+ Q+FAICLSSFD K+ACE Sbjct: 535 IFTMDFRYPLCPLQAFAICLSSFDGKLACE 564
>TULP1_HUMAN (O00294) Tubby-related protein 1 (Tubby-like protein 1)| Length = 542 Score = 101 bits (252), Expect = 1e-21 Identities = 49/89 (55%), Positives = 64/89 (71%) Frame = -2 Query: 593 LKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDL 414 L NK P W++ + LNF+GRVT ASVKNFQ+V +DD D ++LQFG++ +D Sbjct: 461 LHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDP-------DYIVLQFGRVAEDA 513 Query: 413 FTMDYRYPISAFQSFAICLSSFDTKIACE 327 FT+DYRYP+ A Q+FAI LSSFD K+ACE Sbjct: 514 FTLDYRYPLCALQAFAIALSSFDGKLACE 542
>TULP3_MOUSE (O88413) Tubby-related protein 3 (Tubby-like protein 3)| Length = 460 Score = 100 bits (248), Expect = 4e-21 Identities = 47/89 (52%), Positives = 64/89 (71%) Frame = -2 Query: 593 LKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDL 414 L NK+P W++ Q + LNF GRVT ASVKNFQ+V +D D +++QFG++ D+ Sbjct: 379 LHNKAPVWNDDTQSYVLNFHGRVTQASVKNFQIVHGNDP-------DYIVMQFGRVADDV 431 Query: 413 FTMDYRYPISAFQSFAICLSSFDTKIACE 327 FT+DY YP+ A Q+FAI LSSFD+K+ACE Sbjct: 432 FTLDYNYPLCALQAFAIGLSSFDSKLACE 460
>TUB1_CAEEL (Q09306) Tubby protein homolog 1| Length = 426 Score = 96.7 bits (239), Expect = 5e-20 Identities = 46/90 (51%), Positives = 65/90 (72%) Frame = -2 Query: 596 VLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKD 417 +L NKSP+W+++ Q + LNF GRVT ASVKNFQ++ S E+ +++QFG+I D Sbjct: 344 ILSNKSPQWNDETQSYVLNFHGRVTQASVKNFQIIHQS-----SPEY--IVMQFGRISDD 396 Query: 416 LFTMDYRYPISAFQSFAICLSSFDTKIACE 327 FTMD+RYP+SA Q+F I ++SF K+ACE Sbjct: 397 EFTMDFRYPLSAVQAFGIAMTSFHGKLACE 426
>TULP2_HUMAN (O00295) Tubby-related protein 2 (Tubby-like protein 2)| Length = 520 Score = 87.4 bits (215), Expect = 3e-17 Identities = 44/84 (52%), Positives = 59/84 (70%) Frame = -2 Query: 596 VLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKD 417 +L NK+P W ++ + LNF GRVT ASVKNFQ+V P QEH ++LQFG++G D Sbjct: 444 LLHNKTPSWDKENGVYTLNFHGRVTRASVKNFQIV-----DPKHQEH--LVLQFGRVGPD 496 Query: 416 LFTMDYRYPISAFQSFAICLSSFD 345 FTMD+ +P S Q+F+ICLSSF+ Sbjct: 497 TFTMDFCFPFSPLQAFSICLSSFN 520
>TULP4_MOUSE (Q9JIL5) Tubby-like protein 4 (Tubby superfamily protein)| Length = 1547 Score = 64.7 bits (156), Expect = 2e-10 Identities = 31/87 (35%), Positives = 52/87 (59%) Frame = -2 Query: 596 VLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKD 417 V+ NK P W+E Q + L+F GRVT S KNFQ+ + + ++QFG+I + Sbjct: 1470 VMANKQPLWNEATQVYQLDFGGRVTQESAKNFQI----------ELEGRQVMQFGRIDGN 1519 Query: 416 LFTMDYRYPISAFQSFAICLSSFDTKI 336 + +D++YP SA Q+FA+ L++ ++ Sbjct: 1520 AYILDFQYPFSAVQAFAVALANVTQRL 1546
>TULP4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily protein)| Length = 1544 Score = 64.3 bits (155), Expect = 3e-10 Identities = 31/87 (35%), Positives = 51/87 (58%) Frame = -2 Query: 596 VLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKD 417 V+ NK P W+E Q + L+F GRVT S KNFQ+ + + ++QFG+I Sbjct: 1467 VMANKQPLWNEATQVYQLDFGGRVTQESAKNFQI----------ELEGRQVMQFGRIDGS 1516 Query: 416 LFTMDYRYPISAFQSFAICLSSFDTKI 336 + +D++YP SA Q+FA+ L++ ++ Sbjct: 1517 AYILDFQYPFSAVQAFAVALANVTQRL 1543
>PO121_RAT (P52591) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) (P145) Length = 1199 Score = 32.0 bits (71), Expect = 1.4 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +2 Query: 419 LCLSFQTGESPCHAPG*LVHCHLKPPAESSSLTQPSPA 532 LC+S +P P + L PPA SSSL P PA Sbjct: 657 LCVSTPAATAPSPTPASTLFGMLSPPASSSSLATPGPA 694
>YB8B_YEAST (P38355) Protein YBR287W| Length = 427 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/44 (31%), Positives = 27/44 (61%) Frame = +1 Query: 235 KLQATVYPILVIPFFSPLLPAAIIFPSTLFHSQAILVSKLLRHI 366 +L + P++++ S L P+A +FP T+ HS+ ++ S + R I Sbjct: 294 QLGSVSIPLILVVLGSNLYPSAEVFPKTVHHSKLLIGSIIGRMI 337
>ESP1_YEAST (Q03018) Separin (EC 3.4.22.49) (Separase)| Length = 1630 Score = 29.6 bits (65), Expect = 6.9 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +3 Query: 258 NTCDSVFLPPSSSCHHFPQHLVSFTSNLGIKTA*TY 365 N+ FL SSSCH FP +SF +L I +Y Sbjct: 1387 NSIFHTFLVVSSSCHLFPWECLSFLKDLSITRVPSY 1422 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,704,225 Number of Sequences: 219361 Number of extensions: 1764523 Number of successful extensions: 4314 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4161 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4302 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
