ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20n07 |
|---|---|
| Clone Library Name | barley_pub |
>TULP1_MOUSE (Q9Z273) Tubby-related protein 1 (Tubby-like protein 1)| Length = 543 Score = 107 bits (267), Expect = 3e-23 Identities = 58/125 (46%), Positives = 75/125 (60%), Gaps = 11/125 (8%) Frame = -1 Query: 668 IPFFRSKSARIDSAPAQAQD-----------EEKLVLKNKSPRWHEQLQCWCLNFRGRVT 522 IP S + R+ P A D E + L NK P W+E + LNF+GRVT Sbjct: 426 IPGMNSDNERVPIRPRNASDGLLVRWQNKTLESLIELHNKPPIWNEDSGSYTLNFQGRVT 485 Query: 521 VASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFDT 342 ASVKNFQ+V +DD D ++LQFG++ +D FT+DYRYP+ A Q+FAI LSSFD Sbjct: 486 QASVKNFQIVHADDP-------DYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDG 538 Query: 341 KIACE 327 K+ACE Sbjct: 539 KLACE 543
>TULP1_HUMAN (O00294) Tubby-related protein 1 (Tubby-like protein 1)| Length = 542 Score = 105 bits (262), Expect = 1e-22 Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 11/125 (8%) Frame = -1 Query: 668 IPFFRSKSARIDSAPAQAQD-----------EEKLVLKNKSPRWHEQLQCWCLNFRGRVT 522 IP +++ R+ P A D E + L NK P W++ + LNF+GRVT Sbjct: 425 IPGMSAENERVPIRPRNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVT 484 Query: 521 VASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFDT 342 ASVKNFQ+V +DD D ++LQFG++ +D FT+DYRYP+ A Q+FAI LSSFD Sbjct: 485 QASVKNFQIVHADDP-------DYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDG 537 Query: 341 KIACE 327 K+ACE Sbjct: 538 KLACE 542
>TUB_HUMAN (P50607) Tubby protein homolog| Length = 506 Score = 104 bits (259), Expect = 3e-22 Identities = 48/94 (51%), Positives = 68/94 (72%) Frame = -1 Query: 608 EEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGK 429 E + L+NK+P W++ Q + LNF GRVT ASVKNFQ++ +D D +++QFG+ Sbjct: 420 ESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDP-------DYIVMQFGR 472 Query: 428 IGKDLFTMDYRYPISAFQSFAICLSSFDTKIACE 327 + +D+FTMDY YP+ A Q+FAI LSSFD+K+ACE Sbjct: 473 VAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 506
>TUB_RAT (O88808) Tubby protein homolog| Length = 505 Score = 104 bits (259), Expect = 3e-22 Identities = 48/94 (51%), Positives = 68/94 (72%) Frame = -1 Query: 608 EEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGK 429 E + L+NK+P W++ Q + LNF GRVT ASVKNFQ++ +D D +++QFG+ Sbjct: 419 ESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDP-------DYIVMQFGR 471 Query: 428 IGKDLFTMDYRYPISAFQSFAICLSSFDTKIACE 327 + +D+FTMDY YP+ A Q+FAI LSSFD+K+ACE Sbjct: 472 VAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505
>TUB_MOUSE (P50586) Tubby protein| Length = 505 Score = 104 bits (259), Expect = 3e-22 Identities = 48/94 (51%), Positives = 68/94 (72%) Frame = -1 Query: 608 EEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGK 429 E + L+NK+P W++ Q + LNF GRVT ASVKNFQ++ +D D +++QFG+ Sbjct: 419 ESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDP-------DYIVMQFGR 471 Query: 428 IGKDLFTMDYRYPISAFQSFAICLSSFDTKIACE 327 + +D+FTMDY YP+ A Q+FAI LSSFD+K+ACE Sbjct: 472 VAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505
>TULP2_MOUSE (P46686) Tubby-related protein 2 (Tubby-like protein 2) (P4-6| protein) (Fragment) Length = 564 Score = 103 bits (257), Expect = 5e-22 Identities = 49/91 (53%), Positives = 66/91 (72%) Frame = -1 Query: 599 LVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGKIGK 420 L+L+NK+P W ++ + LNF GRVT ASVKNFQ+V D E D ++LQFG++ Sbjct: 481 LLLQNKAPSWSDESGAYVLNFHGRVTRASVKNFQIVHPD-------EPDHLVLQFGRVAP 533 Query: 419 DLFTMDYRYPISAFQSFAICLSSFDTKIACE 327 ++FTMD+RYP+ Q+FAICLSSFD K+ACE Sbjct: 534 NIFTMDFRYPLCPLQAFAICLSSFDGKLACE 564
>TULP3_HUMAN (O75386) Tubby-related protein 3 (Tubby-like protein 3)| Length = 442 Score = 103 bits (256), Expect = 6e-22 Identities = 50/94 (53%), Positives = 66/94 (70%) Frame = -1 Query: 608 EEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGK 429 E + L NK+P W+ Q + LNFRGRVT ASVKNFQLV +D D +++QFG+ Sbjct: 356 ENLVELHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQLVHKNDP-------DYIVMQFGR 408 Query: 428 IGKDLFTMDYRYPISAFQSFAICLSSFDTKIACE 327 + D+FT+DY YP+ A Q+FAI LSSFD+K+ACE Sbjct: 409 VADDVFTLDYNYPLCAVQAFAISLSSFDSKLACE 442
>TULP3_MOUSE (O88413) Tubby-related protein 3 (Tubby-like protein 3)| Length = 460 Score = 101 bits (251), Expect = 2e-21 Identities = 48/94 (51%), Positives = 66/94 (70%) Frame = -1 Query: 608 EEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGK 429 E + L NK+P W++ Q + LNF GRVT ASVKNFQ+V +D D +++QFG+ Sbjct: 374 ENLIELHNKAPVWNDDTQSYVLNFHGRVTQASVKNFQIVHGNDP-------DYIVMQFGR 426 Query: 428 IGKDLFTMDYRYPISAFQSFAICLSSFDTKIACE 327 + D+FT+DY YP+ A Q+FAI LSSFD+K+ACE Sbjct: 427 VADDVFTLDYNYPLCALQAFAIGLSSFDSKLACE 460
>TUB1_CAEEL (Q09306) Tubby protein homolog 1| Length = 426 Score = 96.7 bits (239), Expect = 6e-20 Identities = 46/90 (51%), Positives = 65/90 (72%) Frame = -1 Query: 596 VLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKD 417 +L NKSP+W+++ Q + LNF GRVT ASVKNFQ++ S E+ +++QFG+I D Sbjct: 344 ILSNKSPQWNDETQSYVLNFHGRVTQASVKNFQIIHQS-----SPEY--IVMQFGRISDD 396 Query: 416 LFTMDYRYPISAFQSFAICLSSFDTKIACE 327 FTMD+RYP+SA Q+F I ++SF K+ACE Sbjct: 397 EFTMDFRYPLSAVQAFGIAMTSFHGKLACE 426
>TULP2_HUMAN (O00295) Tubby-related protein 2 (Tubby-like protein 2)| Length = 520 Score = 90.5 bits (223), Expect = 4e-18 Identities = 51/119 (42%), Positives = 72/119 (60%), Gaps = 11/119 (9%) Frame = -1 Query: 668 IPFFRSKSARIDSAPAQAQD-----------EEKLVLKNKSPRWHEQLQCWCLNFRGRVT 522 +P S++ RI+ P Q+ + L+L NK+P W ++ + LNF GRVT Sbjct: 409 LPGTNSQNQRINVQPLNEQESLLSRYQRGDKQGLLLLHNKTPSWDKENGVYTLNFHGRVT 468 Query: 521 VASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFD 345 ASVKNFQ+V P QEH ++LQFG++G D FTMD+ +P S Q+F+ICLSSF+ Sbjct: 469 RASVKNFQIV-----DPKHQEH--LVLQFGRVGPDTFTMDFCFPFSPLQAFSICLSSFN 520
>TULP4_MOUSE (Q9JIL5) Tubby-like protein 4 (Tubby superfamily protein)| Length = 1547 Score = 64.7 bits (156), Expect = 3e-10 Identities = 31/87 (35%), Positives = 52/87 (59%) Frame = -1 Query: 596 VLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKD 417 V+ NK P W+E Q + L+F GRVT S KNFQ+ + + ++QFG+I + Sbjct: 1470 VMANKQPLWNEATQVYQLDFGGRVTQESAKNFQI----------ELEGRQVMQFGRIDGN 1519 Query: 416 LFTMDYRYPISAFQSFAICLSSFDTKI 336 + +D++YP SA Q+FA+ L++ ++ Sbjct: 1520 AYILDFQYPFSAVQAFAVALANVTQRL 1546
>TULP4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily protein)| Length = 1544 Score = 64.3 bits (155), Expect = 3e-10 Identities = 31/87 (35%), Positives = 51/87 (58%) Frame = -1 Query: 596 VLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKD 417 V+ NK P W+E Q + L+F GRVT S KNFQ+ + + ++QFG+I Sbjct: 1467 VMANKQPLWNEATQVYQLDFGGRVTQESAKNFQI----------ELEGRQVMQFGRIDGS 1516 Query: 416 LFTMDYRYPISAFQSFAICLSSFDTKI 336 + +D++YP SA Q+FA+ L++ ++ Sbjct: 1517 AYILDFQYPFSAVQAFAVALANVTQRL 1543
>PO121_RAT (P52591) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) (P145) Length = 1199 Score = 32.0 bits (71), Expect = 1.8 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +2 Query: 419 LCLSFQTGESPCHAPG*LVHCHLKPPAESSSLTQPSPA 532 LC+S +P P + L PPA SSSL P PA Sbjct: 657 LCVSTPAATAPSPTPASTLFGMLSPPASSSSLATPGPA 694
>ESP1_YEAST (Q03018) Separin (EC 3.4.22.49) (Separase)| Length = 1630 Score = 29.6 bits (65), Expect = 9.1 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +3 Query: 258 NTCDSVFLPPSSSCHHFPQHLVSFTSNLGIKTA*TY 365 N+ FL SSSCH FP +SF +L I +Y Sbjct: 1387 NSIFHTFLVVSSSCHLFPWECLSFLKDLSITRVPSY 1422
>YB8B_YEAST (P38355) Protein YBR287W| Length = 427 Score = 29.6 bits (65), Expect = 9.1 Identities = 14/44 (31%), Positives = 27/44 (61%) Frame = +1 Query: 235 KLQATVYPILVIPFFSPLLPAAIIFPSTLFHSQAILVSKLLRHI 366 +L + P++++ S L P+A +FP T+ HS+ ++ S + R I Sbjct: 294 QLGSVSIPLILVVLGSNLYPSAEVFPKTVHHSKLLIGSIIGRMI 337 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,774,285 Number of Sequences: 219361 Number of extensions: 2073776 Number of successful extensions: 5201 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4989 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5189 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6856295237 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
