Clone Name | rbasd20n06 |
---|---|
Clone Library Name | barley_pub |
>SEH1L_HUMAN (Q96EE3) Nucleoporin SEH1-like (SEC13-like protein)| Length = 421 Score = 31.2 bits (69), Expect = 1.8 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = +2 Query: 260 SPV--SSQGAAAGRSLSSTLPACAGSLRQVSQYCSSPGTSVISPLSGTRSLNKWPSPAAD 433 SPV SSQ + SL ST+P+ SL SS G +PL R+ ++W S A Sbjct: 324 SPVNGSSQQGTSNPSLGSTIPSLQNSLNG-----SSAGRYFFTPLDSPRAGSRWSSYAQL 378 Query: 434 RWTPP 448 PP Sbjct: 379 LPPPP 383
>ANSP_EIMTE (P15744) Sporozoite antigen| Length = 216 Score = 30.8 bits (68), Expect = 2.4 Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +2 Query: 275 QGAAAGRSLSSTLPACA-GSLRQVSQYCSSPGTS 373 QGAAAGRSL PA A G +Q S Y + P +S Sbjct: 175 QGAAAGRSLGYGAPAAAYGQQQQPSSYGAPPASS 208
>ASLB_ECOLI (P25550) Probable arylsulfatase-activating protein aslB| Length = 411 Score = 30.4 bits (67), Expect = 3.1 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = +1 Query: 16 GRCPKHALLLEVSALPTLNPHTAS-QRQPAYLPPLFR 123 G CPKH +L+ S P LN A QR +LPP + Sbjct: 350 GGCPKHRFMLDASGKPGLNYLCAGYQRYFRHLPPYLK 386
>YEN1_SCHPO (O13695) Hypothetical serine-rich protein C11G7.01 in chromosome I| Length = 536 Score = 30.0 bits (66), Expect = 4.1 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Frame = +2 Query: 248 STSRSPVSSQGAAAGRSLSST--LPACAGSLRQVSQYCSSPGTSVISPLSGTRSLNKWPS 421 ++S P SS AAA SLSS+ +P+ + S+ S + +S SPLS + + S Sbjct: 18 ASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSS----SSFTS 73 Query: 422 PAA 430 PA+ Sbjct: 74 PAS 76
>APTH1_YEAST (Q12354) Acyl-protein thioesterase 1 (EC 3.1.2.-)| Length = 227 Score = 29.6 bits (65), Expect = 5.3 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = +2 Query: 272 SQGAAAGRSLSSTLPACAGSLRQVSQYCSSPG 367 SQGAA + S TLP G + +S +CS PG Sbjct: 119 SQGAALALATSVTLPWKIGGIVALSGFCSIPG 150
>CBID_PROMA (Q7VEH6) Putative cobalt-precorrin-6A synthase [deacetylating] (EC| 2.1.1.-) Length = 381 Score = 29.6 bits (65), Expect = 5.3 Identities = 21/93 (22%), Positives = 48/93 (51%), Gaps = 2/93 (2%) Frame = -2 Query: 527 DXVNMLLLDMFEKETSVHAASSLTGAREVSSGQQLVKAICSEIEYLKAERSRMCQEKSST 348 + + + L+ FE+ S+ AA S+ +++S+ ++L K + EIE K + + ++S+ Sbjct: 289 ERIPLSLIKEFEEAVSIEAALSILENKDISTAKKLWKRLAVEIE--KRSIDYVKRYETSS 346 Query: 347 VIPDAEILHRLE--GWTTSFVQQQLPGMILEIE 255 + A + R W ++ +Q+ L++E Sbjct: 347 IEIGAVMFDRARKIRWAGNYALKQINSFGLKLE 379
>MCPC_BACSU (P54576) Methyl-accepting chemotaxis protein mcpC| Length = 654 Score = 29.3 bits (64), Expect = 7.0 Identities = 20/80 (25%), Positives = 37/80 (46%) Frame = -2 Query: 473 AASSLTGAREVSSGQQLVKAICSEIEYLKAERSRMCQEKSSTVIPDAEILHRLEGWTTSF 294 A S + +S +L++ E + E SRM E++S + E+L+ + S Sbjct: 516 AEQSALSTKHISETVKLIQLETKEASHAMVEASRMNDEQNSAIHETGEVLNTITAEMQSL 575 Query: 293 VQQQLPGMILEIERSIFKEL 234 V Q + + EI+R ++L Sbjct: 576 V-QGIDHIYAEIQRMSEEQL 594
>DMD_CANFA (O97592) Dystrophin| Length = 3680 Score = 28.9 bits (63), Expect = 9.1 Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 5/87 (5%) Frame = -2 Query: 494 EKETSVHAASSLTGAR---EVSSGQQLVKAICSEIEYLKAERSRMCQEKSS--TVIPDAE 330 EKE +V+ + TG + EV S Q + + +++E K ++C + + + Sbjct: 578 EKEDAVNKIHT-TGFKDQSEVLSNLQKLAVLKTDLEKKKQTMDKLCSLNQDLLSALKNTV 636 Query: 329 ILHRLEGWTTSFVQQQLPGMILEIERS 249 + H++E W +F Q+ ++ ++E+S Sbjct: 637 VAHKMEAWLDNFA-QRWDNLVQKLEKS 662
>I10R2_MOUSE (Q61190) Interleukin-10 receptor beta chain precursor (IL-10R-B)| (IL-10R2) (Cytokine receptor family 2 member 4) (Cytokine receptor class-II member 4) (CRF2-4) (CDw210b antigen) Length = 349 Score = 28.9 bits (63), Expect = 9.1 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = -2 Query: 362 EKSSTVIP-DAEILHRLEGWTTSFVQQQLPGMILEIERS 249 EK V P D+E+L LE WTT +Q Q G +L+ R+ Sbjct: 165 EKFQVVSPYDSEVLRNLEPWTTYCIQVQ--GFLLDQNRT 201
>ANKS1_MOUSE (P59672) Ankyrin repeat and SAM domain-containing protein 1A| Length = 1149 Score = 28.9 bits (63), Expect = 9.1 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 8/94 (8%) Frame = +2 Query: 245 ISTSRSPVSSQGAAAGRSLSSTLPACAGSLRQVSQYCSSPGTS-------VISPLSGTRS 403 IS + SP+S + GRS LP+ A + R+ PGT+ V S T+ Sbjct: 868 ISQTSSPLSQNDSCTGRSADLLLPS-ADTSRRRHDSLPDPGTASRADRFRVQEEPSETKL 926 Query: 404 LNKWPSPAADRWTPPWLR*ASWPHGP-RFLSQTC 502 + PS AA P+ SW H P + + ++C Sbjct: 927 TLRPPSLAA-----PYAPVQSWQHQPEKLIFESC 955 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,691,838 Number of Sequences: 219361 Number of extensions: 1386803 Number of successful extensions: 4424 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4259 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4420 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)