Clone Name | rbasd20n06 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_476397.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3884 Score = 129 bits (65), Expect = 1e-26 Identities = 128/149 (85%) Strand = Plus / Minus Query: 199 ccgtcggcagcctcgccacgcaccacctcgtcgacgagctccttgaatatcgacctctcg 258 |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 3607 ccgtcggcggactcgccgcgcaccacctcgtcgacgagctccttgaatatcgacctctcg 3548 Query: 259 atctccagtatcatcccagggagctgctgctggacgaagcttgtcgtccacccttccagc 318 |||||||| | ||| || || |||| | | || |||||| | || ||||||||||| | Sbjct: 3547 atctccagcaccatgcctggaagctccctcctgatgaagctcggcgaccacccttccaac 3488 Query: 319 ctgtgcaggatctctgcgtcaggtatcac 347 |||| ||||||||||||||||| ||||| Sbjct: 3487 ctgttgaggatctctgcgtcagggatcac 3459 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 33 tgcactcctacttgaggtttctgcattgc 61 |||| |||||||| ||||||||||||||| Sbjct: 3823 tgcattcctacttcaggtttctgcattgc 3795
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 129 bits (65), Expect = 1e-26 Identities = 128/149 (85%) Strand = Plus / Minus Query: 199 ccgtcggcagcctcgccacgcaccacctcgtcgacgagctccttgaatatcgacctctcg 258 |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 520639 ccgtcggcggactcgccgcgcaccacctcgtcgacgagctccttgaatatcgacctctcg 520580 Query: 259 atctccagtatcatcccagggagctgctgctggacgaagcttgtcgtccacccttccagc 318 |||||||| | ||| || || |||| | | || |||||| | || ||||||||||| | Sbjct: 520579 atctccagcaccatgcctggaagctccctcctgatgaagctcggcgaccacccttccaac 520520 Query: 319 ctgtgcaggatctctgcgtcaggtatcac 347 |||| ||||||||||||||||| ||||| Sbjct: 520519 ctgttgaggatctctgcgtcagggatcac 520491 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 33 tgcactcctacttgaggtttctgcattgc 61 |||| |||||||| ||||||||||||||| Sbjct: 520855 tgcattcctacttcaggtttctgcattgc 520827
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0585H11 Length = 149371 Score = 129 bits (65), Expect = 1e-26 Identities = 128/149 (85%) Strand = Plus / Minus Query: 199 ccgtcggcagcctcgccacgcaccacctcgtcgacgagctccttgaatatcgacctctcg 258 |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 122803 ccgtcggcggactcgccgcgcaccacctcgtcgacgagctccttgaatatcgacctctcg 122744 Query: 259 atctccagtatcatcccagggagctgctgctggacgaagcttgtcgtccacccttccagc 318 |||||||| | ||| || || |||| | | || |||||| | || ||||||||||| | Sbjct: 122743 atctccagcaccatgcctggaagctccctcctgatgaagctcggcgaccacccttccaac 122684 Query: 319 ctgtgcaggatctctgcgtcaggtatcac 347 |||| ||||||||||||||||| ||||| Sbjct: 122683 ctgttgaggatctctgcgtcagggatcac 122655 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 33 tgcactcctacttgaggtttctgcattgc 61 |||| |||||||| ||||||||||||||| Sbjct: 123019 tgcattcctacttcaggtttctgcattgc 122991
>dbj|AK070584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062J01, full insert sequence Length = 3885 Score = 129 bits (65), Expect = 1e-26 Identities = 128/149 (85%) Strand = Plus / Minus Query: 199 ccgtcggcagcctcgccacgcaccacctcgtcgacgagctccttgaatatcgacctctcg 258 |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 3608 ccgtcggcggactcgccgcgcaccacctcgtcgacgagctccttgaatatcgacctctcg 3549 Query: 259 atctccagtatcatcccagggagctgctgctggacgaagcttgtcgtccacccttccagc 318 |||||||| | ||| || || |||| | | || |||||| | || ||||||||||| | Sbjct: 3548 atctccagcaccatgcctggaagctccctcctgatgaagctcggcgaccacccttccaac 3489 Query: 319 ctgtgcaggatctctgcgtcaggtatcac 347 |||| ||||||||||||||||| ||||| Sbjct: 3488 ctgttgaggatctctgcgtcagggatcac 3460 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 33 tgcactcctacttgaggtttctgcattgc 61 |||| |||||||| ||||||||||||||| Sbjct: 3824 tgcattcctacttcaggtttctgcattgc 3796
>dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1567_G09 Length = 121388 Score = 129 bits (65), Expect = 1e-26 Identities = 128/149 (85%) Strand = Plus / Minus Query: 199 ccgtcggcagcctcgccacgcaccacctcgtcgacgagctccttgaatatcgacctctcg 258 |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 74551 ccgtcggcggactcgccgcgcaccacctcgtcgacgagctccttgaatatcgacctctcg 74492 Query: 259 atctccagtatcatcccagggagctgctgctggacgaagcttgtcgtccacccttccagc 318 |||||||| | ||| || || |||| | | || |||||| | || ||||||||||| | Sbjct: 74491 atctccagcaccatgcctggaagctccctcctgatgaagctcggcgaccacccttccaac 74432 Query: 319 ctgtgcaggatctctgcgtcaggtatcac 347 |||| ||||||||||||||||| ||||| Sbjct: 74431 ctgttgaggatctctgcgtcagggatcac 74403 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 33 tgcactcctacttgaggtttctgcattgc 61 |||| |||||||| ||||||||||||||| Sbjct: 74767 tgcattcctacttcaggtttctgcattgc 74739
>gb|AY110473.1| Zea mays CL10705_-2 mRNA sequence Length = 549 Score = 89.7 bits (45), Expect = 9e-15 Identities = 75/85 (88%) Strand = Plus / Plus Query: 199 ccgtcggcagcctcgccacgcaccacctcgtcgacgagctccttgaatatcgacctctcg 258 ||||| |||| ||| ||| ||||||||||||| || |||||||||||||||||||| ||| Sbjct: 291 ccgtcagcagactccccatgcaccacctcgtccaccagctccttgaatatcgacctttcg 350 Query: 259 atctccagtatcatcccagggagct 283 |||||||| | |||||| ||||||| Sbjct: 351 atctccagcaccatccccgggagct 375
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 acccttccagcctgtgcagga 328 ||||||||||||||||||||| Sbjct: 2712340 acccttccagcctgtgcagga 2712320
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 agccagccagcgccagccagc 101 ||||||||||||||||||||| Sbjct: 1431941 agccagccagcgccagccagc 1431961
>gb|AC106705.7| Homo sapiens 3 BAC RP11-262L17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 100464 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 gccagccagcgccagccagcc 102 ||||||||||||||||||||| Sbjct: 88076 gccagccagcgccagccagcc 88096
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 cgcctcctgccgcgcctgccagccc 187 |||||||||| |||||||||||||| Sbjct: 866398 cgcctcctgctgcgcctgccagccc 866422 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 tttctgcattgcccacactc 69 |||||||||||||||||||| Sbjct: 567219 tttctgcattgcccacactc 567238
>gb|DQ397610.1| Cenarchaeum symbiosum clone C14A09, complete sequence Length = 45665 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 221 ccacctcgtcgacgagctcct 241 ||||||||||||||||||||| Sbjct: 25127 ccacctcgtcgacgagctcct 25147
>gb|BC040823.1| Mus musculus LSM14 homolog B (SCD6, S. cerevisiae), mRNA (cDNA clone IMAGE:4458586), partial cds Length = 2558 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 gaggcgcctcctgccgcgcct 179 ||||||||||||||||||||| Sbjct: 87 gaggcgcctcctgccgcgcct 67
>dbj|AK112787.1| Ciona intestinalis cDNA, clone:cilv008o07, full insert sequence Length = 1853 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 480 cgaggtttctttctcaaacatgtca 504 ||||||||||| ||||||||||||| Sbjct: 259 cgaggtttcttcctcaaacatgtca 235
>emb|AL663067.14| Mouse DNA sequence from clone RP23-23G3 on chromosome 2, complete sequence Length = 193057 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 gaggcgcctcctgccgcgcct 179 ||||||||||||||||||||| Sbjct: 145947 gaggcgcctcctgccgcgcct 145927
>ref|NM_189516.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 921 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 ccacctcgtcgacgagctcc 240 |||||||||||||||||||| Sbjct: 653 ccacctcgtcgacgagctcc 672
>gb|AC147772.1| Homo sapiens chromosome 16 clone PCR-16A04, complete sequence Length = 6214 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 78 cacagccagccagcgccagccagcctat 105 ||||||| ||||||||||||||| |||| Sbjct: 2226 cacagccggccagcgccagccaggctat 2253
>gb|AC117228.2| Mus musculus BAC clone RP23-380J24 from chromosome 2, complete sequence Length = 179980 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 gctgctgaccgctggacacc 444 |||||||||||||||||||| Sbjct: 41103 gctgctgaccgctggacacc 41122
>gb|AC010563.6| Drosophila melanogaster 3L BAC RP98-9M20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185497 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 cagccagccagcgccagcca 99 |||||||||||||||||||| Sbjct: 99570 cagccagccagcgccagcca 99589
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gccgcgcctgccagcccttg 190 |||||||||||||||||||| Sbjct: 2401368 gccgcgcctgccagcccttg 2401387
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 ccacctcgtcgacgagctcc 240 |||||||||||||||||||| Sbjct: 43212848 ccacctcgtcgacgagctcc 43212829
>gb|AC007374.6|AC007374 Homo sapiens chromosome 14 clone RP11-325L17 map 14q31, complete sequence Length = 190565 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 cctccctggctccggtgagc 462 |||||||||||||||||||| Sbjct: 78775 cctccctggctccggtgagc 78756
>dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0020E09 Length = 149195 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 ccacctcgtcgacgagctcc 240 |||||||||||||||||||| Sbjct: 100303 ccacctcgtcgacgagctcc 100284
>gb|AF178462.1|AF178462 Bombyx mori prophenoloxidase-1 (pro-PO1) mRNA, complete cds Length = 2058 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 cgctggacacctccctggct 453 |||||||||||||||||||| Sbjct: 508 cgctggacacctccctggct 489
>emb|AL928793.13| Mouse DNA sequence from clone RP23-89M14 on chromosome 2, complete sequence Length = 238545 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 gctgctgaccgctggacacc 444 |||||||||||||||||||| Sbjct: 39874 gctgctgaccgctggacacc 39855
>emb|AL591075.11| Mouse DNA sequence from clone RP23-159O6 on chromosome 11, complete sequence Length = 159896 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 tctccagtatcatcccagggagct 283 ||||||| |||||||||||||||| Sbjct: 70454 tctccagaatcatcccagggagct 70431
>dbj|AK107679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-A06, full insert sequence Length = 1419 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 cacctcgtcgacgagctcct 241 |||||||||||||||||||| Sbjct: 131 cacctcgtcgacgagctcct 112
>gb|AC009731.6|AC009731 Homo sapiens 12 BAC RP11-438N16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172749 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 ctcaatcctcacacagccag 86 |||||||||||||||||||| Sbjct: 162633 ctcaatcctcacacagccag 162652
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 acacagccagccagcgccag 96 |||||||||||||||||||| Sbjct: 1347207 acacagccagccagcgccag 1347226
>gb|AC154438.2| Mus musculus BAC clone RP23-178P20 from 16, complete sequence Length = 213575 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tctcttcagacaagccaaat 133 |||||||||||||||||||| Sbjct: 140112 tctcttcagacaagccaaat 140131
>emb|AL121784.5|CNS01DSH Human chromosome 14 DNA sequence BAC R-305I3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 180523 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 cctccctggctccggtgagc 462 |||||||||||||||||||| Sbjct: 56294 cctccctggctccggtgagc 56275
>gb|AE003518.3| Drosophila melanogaster chromosome 3L, section 67 of 83 of the complete sequence Length = 279088 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 cagccagccagcgccagcca 99 |||||||||||||||||||| Sbjct: 55615 cagccagccagcgccagcca 55634
>emb|AL133240.4|CNS01DUD Human chromosome 14 DNA sequence BAC R-639F2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 196853 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 432 accgctggacacctccctggctcc 455 ||||||||||| |||||||||||| Sbjct: 26093 accgctggacatctccctggctcc 26116
>dbj|D49370.1|BMOPS1A Bombyx mori mRNA for prophenoloxidase subunit 1, complete cds Length = 3612 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 cgctggacacctccctggct 453 |||||||||||||||||||| Sbjct: 528 cgctggacacctccctggct 509 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,368,830 Number of Sequences: 3902068 Number of extensions: 4368830 Number of successful extensions: 87873 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87512 Number of HSP's gapped (non-prelim): 361 length of query: 528 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 505 effective length of database: 17,143,297,704 effective search space: 8657365340520 effective search space used: 8657365340520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)