Clone Name | rbasd20n04 |
---|---|
Clone Library Name | barley_pub |
>gb|AY109652.1| Zea mays CL2578_1 mRNA sequence Length = 1512 Score = 79.8 bits (40), Expect = 6e-12 Identities = 109/132 (82%) Strand = Plus / Plus Query: 196 ctaaaatatgctcccataatcttttctgggaagggacgagggtagcccgcccgtcgtaaa 255 |||||| |||||||||||||| ||||| | ||| || || | || ||| | |||||||| Sbjct: 289 ctaaaagatgctcccataatcctttcttgcaagagatgaagataacccacttgtcgtaaa 348 Query: 256 tggatgcacgcctgttcctccccagggcactccctcccccatgccatagggaggccatgc 315 || ||| | ||||||||||||||||||||||| || ||||||||| | |||||| || Sbjct: 349 tgagtgccctcctgttcctccccagggcactccatcgcccatgccaaaactaggccacgc 408 Query: 316 aggctgcccact 327 |||||||||||| Sbjct: 409 aggctgcccact 420
>emb|AL160290.15| Human DNA sequence from clone RP11-338O1 on chromosome 10 Contains a novel gene and the 5' end of a novel gene, complete sequence Length = 201397 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 97 gaaagaaaaggaaaatcaatag 118 |||||||||||||||||||||| Sbjct: 45753 gaaagaaaaggaaaatcaatag 45732
>gb|AC115624.2| Homo sapiens BAC clone RP11-536N3 from 4, complete sequence Length = 64626 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 196 ctaaaatatgctcccataatct 217 |||||||||||||||||||||| Sbjct: 35474 ctaaaatatgctcccataatct 35495
>ref|XM_473779.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2775 Score = 42.1 bits (21), Expect = 1.2 Identities = 66/81 (81%) Strand = Plus / Minus Query: 203 atgctcccataatcttttctgggaagggacgagggtagcccgcccgtcgtaaatggatgc 262 |||||||| ||||| ||||| ||||| || || |||||||| || |||||||||||| Sbjct: 2768 atgctcccgtaatcctttcttggaagagatgaaggtagcccagttgtggtaaatggatgc 2709 Query: 263 acgcctgttcctccccagggc 283 | | ||||||||||||||| Sbjct: 2708 ccactcgttcctccccagggc 2688
>ref|XM_786287.1| PREDICTED: Strongylocentrotus purpuratus similar to Coiled-coil domain containing protein 11 (LOC586508), mRNA Length = 2384 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 agggaggccatgcaggctgcc 323 ||||||||||||||||||||| Sbjct: 1042 agggaggccatgcaggctgcc 1062
>emb|BX649531.7| Zebrafish DNA sequence from clone CH211-285L4 in linkage group 15, complete sequence Length = 185865 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 203 atgctcccataatcttttctg 223 ||||||||||||||||||||| Sbjct: 133113 atgctcccataatcttttctg 133093
>gb|AC016768.10| Homo sapiens BAC clone RP11-560C7 from 2, complete sequence Length = 184451 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 94 caggaaagaaaaggaaaatcaatag 118 |||||||||||||| |||||||||| Sbjct: 77008 caggaaagaaaagggaaatcaatag 77032
>ref|XM_228162.3| PREDICTED: Rattus norvegicus radial spokehead-like 3 (predicted) (Rshl3_predicted), mRNA Length = 2136 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 aagaaaaggaaaatcaatagccaga 123 ||||||||||||||||| ||||||| Sbjct: 26 aagaaaaggaaaatcaagagccaga 50
>dbj|AK100925.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134G14, full insert sequence Length = 3611 Score = 42.1 bits (21), Expect = 1.2 Identities = 66/81 (81%) Strand = Plus / Minus Query: 203 atgctcccataatcttttctgggaagggacgagggtagcccgcccgtcgtaaatggatgc 262 |||||||| ||||| ||||| ||||| || || |||||||| || |||||||||||| Sbjct: 3407 atgctcccgtaatcctttcttggaagagatgaaggtagcccagttgtggtaaatggatgc 3348 Query: 263 acgcctgttcctccccagggc 283 | | ||||||||||||||| Sbjct: 3347 ccactcgttcctccccagggc 3327
>dbj|AK060878.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-A07, full insert sequence Length = 1242 Score = 42.1 bits (21), Expect = 1.2 Identities = 66/81 (81%) Strand = Plus / Minus Query: 203 atgctcccataatcttttctgggaagggacgagggtagcccgcccgtcgtaaatggatgc 262 |||||||| ||||| ||||| ||||| || || |||||||| || |||||||||||| Sbjct: 1038 atgctcccgtaatcctttcttggaagagatgaaggtagcccagttgtggtaaatggatgc 979 Query: 263 acgcctgttcctccccagggc 283 | | ||||||||||||||| Sbjct: 978 ccactcgttcctccccagggc 958
>emb|AL807815.3| Mouse DNA sequence from clone RP23-207H16 on chromosome 4, complete sequence Length = 206914 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 ggaaagaaaaggaaaatcaat 116 ||||||||||||||||||||| Sbjct: 43692 ggaaagaaaaggaaaatcaat 43712
>ref|XM_514061.1| PREDICTED: Pan troglodytes LOC457586 (LOC457586), mRNA Length = 16326 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cagcaacattgcaggaaaga 102 |||||||||||||||||||| Sbjct: 10554 cagcaacattgcaggaaaga 10573
>gb|AY744399.1| Uncultured alpha proteobacterium EBAC2C11, complete sequence Length = 102726 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 199 aaatatgctcccataatcttttct 222 |||||||||||| ||||||||||| Sbjct: 88454 aaatatgctcccttaatcttttct 88477
>gb|AC151117.4| Bos taurus BAC CH240-85N4 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 199710 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 aggaaagaaaaggaaaatca 114 |||||||||||||||||||| Sbjct: 73284 aggaaagaaaaggaaaatca 73303
>gb|AC123741.9| Mus musculus chromosome 1, clone RP24-113A5, complete sequence Length = 188453 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 gaaagaaaaggaaaatcaat 116 |||||||||||||||||||| Sbjct: 151600 gaaagaaaaggaaaatcaat 151619
>ref|NM_031935.1| Homo sapiens hemicentin 1 (HMCN1), mRNA Length = 18209 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cagcaacattgcaggaaaga 102 |||||||||||||||||||| Sbjct: 11314 cagcaacattgcaggaaaga 11333
>ref|XM_993152.1| PREDICTED: Mus musculus radial spokehead-like 3 (Rshl3), mRNA Length = 3605 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 aagaaaaggaaaatcaatagccag 122 ||||||||||||||||| |||||| Sbjct: 26 aagaaaaggaaaatcaagagccag 49
>ref|XM_906805.2| PREDICTED: Mus musculus radial spokehead-like 3 (Rshl3), mRNA Length = 3605 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 aagaaaaggaaaatcaatagccag 122 ||||||||||||||||| |||||| Sbjct: 26 aagaaaaggaaaatcaagagccag 49
>ref|XM_137041.6| PREDICTED: Mus musculus radial spokehead-like 3 (Rshl3), mRNA Length = 3605 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 aagaaaaggaaaatcaatagccag 122 ||||||||||||||||| |||||| Sbjct: 26 aagaaaaggaaaatcaagagccag 49
>ref|XM_547438.2| PREDICTED: Canis familiaris similar to High Incidence of Males (increased X chromosome loss) family member (him-4) (LOC490318), mRNA Length = 17440 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cagcaacattgcaggaaaga 102 |||||||||||||||||||| Sbjct: 11088 cagcaacattgcaggaaaga 11107
>gb|AC152057.11| Medicago truncatula clone mth2-25a12, complete sequence Length = 108797 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 aggaaagaaaaggaaaatca 114 |||||||||||||||||||| Sbjct: 77413 aggaaagaaaaggaaaatca 77394
>emb|AL592444.18| Human DNA sequence from clone RP11-178P20 on chromosome 6 Contains the 5' end of the TCP10 gene for t-complex 10 (mouse) and a CpG island, complete sequence Length = 74279 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 285 ctccctcccccatgccatagggag 308 ||||||||||||||||||| |||| Sbjct: 49278 ctccctcccccatgccataaggag 49255
>emb|AL161911.17| Human DNA sequence from clone RP11-27I1 on chromosome 9 Contains the FBXW2 gene for F-box and WD-40 domain protein 2 (FBW2), two novel genes, a UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 3 (B3GALT3) pseudogene, the PSMD5 gene for proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 (S5B, KIAA0072, MGC23145), the 3' end of a novel gene (DKFZP727G051) and two CpG islands, complete sequence Length = 109176 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 caggaaagaaaaggaaaatc 113 |||||||||||||||||||| Sbjct: 63079 caggaaagaaaaggaaaatc 63098
>emb|AL135797.10| Human DNA sequence from clone GS1-77J13 on chromosome 1 Contains part of the gene for hemicentin, complete sequence Length = 41219 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cagcaacattgcaggaaaga 102 |||||||||||||||||||| Sbjct: 14778 cagcaacattgcaggaaaga 14797
>emb|AJ306906.1|HSA306906 Homo sapiens partial mRNA for fibulin-6 (FIBL-6 gene) Length = 8546 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cagcaacattgcaggaaaga 102 |||||||||||||||||||| Sbjct: 2196 cagcaacattgcaggaaaga 2215
>gb|AC079623.15| Homo sapiens 3 BAC RP11-201D16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 201451 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 aggaaagaaaaggaaaatca 114 |||||||||||||||||||| Sbjct: 42669 aggaaagaaaaggaaaatca 42650
>gb|AF156100.1|AF156100 Homo sapiens hemicentin mRNA, complete cds Length = 18207 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cagcaacattgcaggaaaga 102 |||||||||||||||||||| Sbjct: 11314 cagcaacattgcaggaaaga 11333
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.8 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 285 ctccctcccccatgccatagggaggcca 312 |||||||||||||||| ||||||||||| Sbjct: 1278931 ctccctcccccatgcc-tagggaggcca 1278905
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 caggaaagaaaaggaaaatc 113 |||||||||||||||||||| Sbjct: 23877567 caggaaagaaaaggaaaatc 23877548
>dbj|AP005884.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0598D02 Length = 155238 Score = 40.1 bits (20), Expect = 4.8 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 285 ctccctcccccatgccatagggaggcca 312 |||||||||||||||| ||||||||||| Sbjct: 49935 ctccctcccccatgcc-tagggaggcca 49909
>emb|BX663494.4| Zebrafish DNA sequence from clone CH211-234N7 in linkage group 18, complete sequence Length = 150365 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 aggaaagaaaaggaaaatcaatag 118 ||||||||||||||||| |||||| Sbjct: 61888 aggaaagaaaaggaaaaacaatag 61911
>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0704D04 Length = 147638 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 caggaaagaaaaggaaaatc 113 |||||||||||||||||||| Sbjct: 23971 caggaaagaaaaggaaaatc 23952
>dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0563F09 Length = 174905 Score = 40.1 bits (20), Expect = 4.8 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 285 ctccctcccccatgccatagggaggcca 312 |||||||||||||||| ||||||||||| Sbjct: 109805 ctccctcccccatgcc-tagggaggcca 109779
>gb|AC153961.2| Mus musculus 10 BAC RP24-330I16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 159792 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aagaaaaggaaaatcaatagccag 122 ||||||||||||||||| |||||| Sbjct: 21827 aagaaaaggaaaatcaagagccag 21804
>dbj|AK071936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074A19, full insert sequence Length = 2033 Score = 40.1 bits (20), Expect = 4.8 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 285 ctccctcccccatgccatagggaggcca 312 |||||||||||||||| ||||||||||| Sbjct: 60 ctccctcccccatgcc-tagggaggcca 86
>emb|BX927240.11| Zebrafish DNA sequence from clone DKEY-16N13 in linkage group 18, complete sequence Length = 263615 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 95 aggaaagaaaaggaaaatcaatag 118 ||||||||||||||||| |||||| Sbjct: 154015 aggaaagaaaaggaaaaacaatag 154038
>emb|CT025923.7| Zebrafish DNA sequence from clone CH73-197B9 in linkage group 18, complete sequence Length = 44068 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 95 aggaaagaaaaggaaaatcaatag 118 ||||||||||||||||| |||||| Sbjct: 7252 aggaaagaaaaggaaaaacaatag 7229
>gb|AC002499.1|AC002499 Human Cosmid g5129s435 from 7q31.3, complete sequence Length = 41052 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 tgcaggaaagaaaaggaaaa 111 |||||||||||||||||||| Sbjct: 26804 tgcaggaaagaaaaggaaaa 26823 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,294,019 Number of Sequences: 3902068 Number of extensions: 3294019 Number of successful extensions: 100218 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 100104 Number of HSP's gapped (non-prelim): 121 length of query: 362 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 340 effective length of database: 17,147,199,772 effective search space: 5830047922480 effective search space used: 5830047922480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)