ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel al... 33 0.57
2GPSM3_HUMAN (Q9Y4H4) G-protein signaling modulator 3 (Activator ... 31 2.8
3TRMD_TREPA (O83878) tRNA (guanine-N(1)-)-methyltransferase (EC 2... 30 3.7
4PELI_DROME (O77237) Protein pellino 30 3.7
5GUC2G_RAT (P55205) Guanylate cyclase 2G precursor (EC 4.6.1.2) (... 30 4.8
6K0310_HUMAN (O15027) Protein KIAA0310 30 4.8
7NTX2_NAJAT (Q9W717) Neurotoxin-like protein NTL2 precursor 30 6.3
8ATRIP_DROME (Q9VVN4) ATR-interacting protein mus304 (Mutagen-sen... 29 8.2
9KPC1B_CAEEL (P34885) Protein kinase C-like 1B (EC 2.7.11.13) (PK... 29 8.2
10DIS3_SCHPO (P37202) Mitotic control protein dis3 29 8.2

>CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel alpha-1B subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.2)
            (Calcium channel, L type, alpha-1 polypeptide isoform 5)
            (Brain calcium channel III) (BIII)
          Length = 2339

 Score = 33.1 bits (74), Expect = 0.57
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = -3

Query: 549  SSSPSRSIPDTHVPFGEDTVQRKSSRRKRSCMISSLTPRPNP--RLPS 412
            S +P+R++P+   P  E+T    S R  R+  +SSLT +P P  R+P+
Sbjct: 2266 SEAPARALPED-APAFEETAASNSGRSSRTSYVSSLTSQPPPLRRVPN 2312



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>GPSM3_HUMAN (Q9Y4H4) G-protein signaling modulator 3 (Activator of G-protein|
           signaling 4) (Protein G18) (G18.1b)
          Length = 160

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -2

Query: 556 FRQLVPVPQHSGYTRAFRGGHRATQIQQKKEELYDLIADAQAKSAASQRDRFVLKTLCTQ 377
           +R   P P   G      G   A+ +  + E L DL+A+AQ++    QR  F      + 
Sbjct: 33  WRSAPPSPPPPGTRHTALGPRSASLLSLQTELLLDLVAEAQSRRLEEQRATFYTPQNPSS 92

Query: 376 VKPRPHDP 353
           + P P  P
Sbjct: 93  LAPAPLRP 100



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>TRMD_TREPA (O83878) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)|
           (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
          Length = 250

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -2

Query: 544 VPVPQHSGYTRAFRGGHRATQIQQKKEELYDLIADAQAKSAASQRDRFVLKTLCTQVKPR 365
           VP    SG+    R    A QI++ +    DL++ A+A +A +Q    +LK L  ++ P 
Sbjct: 188 VPPVLLSGHHAHIRTWRLARQIEKTRRNRPDLLSAARASAAWTQEAESLLKELDYELPPH 247

Query: 364 P 362
           P
Sbjct: 248 P 248



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>PELI_DROME (O77237) Protein pellino|
          Length = 424

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 438 ASAMRSYSSSFFCWICVARCPPRKARVY 521
           A  M+S  S F C I V RC P KAR++
Sbjct: 136 AKVMQSTISRFACRILVNRCEPAKARIF 163



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>GUC2G_RAT (P55205) Guanylate cyclase 2G precursor (EC 4.6.1.2) (Guanylyl|
           cyclase receptor G) (GC-G) (Kinase-like
           domain-containing soluble guanylyl cyclase) (ksGC)
          Length = 1100

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
 Frame = +3

Query: 198 ILRCSTGMHISCSTSLRAP*ARPPRVMQPVTKTNA--NAARLLAFLTVIISRH*GSCGLG 371
           + R   G+ I+    L +    P  +    T TNA  NA   LA     + R   S  +G
Sbjct: 62  VQRLGAGLQIAVD-KLNSEPVGPGNLSWEFTYTNATCNAKESLAAFIDQVQREHISVLIG 120

Query: 372 LTCVQ--RVLSTNLSRWEAADLAWASAMRSYSSSFFCWICVARCPPRK 509
             C +   V+    S W+     +   M +    F+C  CV   PP++
Sbjct: 121 PACPEAAEVIGLLASEWDIPLFDFVGQMTALEDHFWCDTCVTLVPPKQ 168



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>K0310_HUMAN (O15027) Protein KIAA0310|
          Length = 2179

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 555  FASSSPSRSIPDTHVPFGEDTVQRKSSRRKRSCMISSLTPRPNPRLPSET 406
            FA+ +PSR++PD+  P G D      ++   S   +  T RP      ET
Sbjct: 1872 FANLTPSRTVPDSEAPPGWDRADSGPTQPPLSLSPAPETKRPGQAAKKET 1921



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>NTX2_NAJAT (Q9W717) Neurotoxin-like protein NTL2 precursor|
          Length = 86

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 483 CVARCPPRKARVYPECC 533
           C A CP  +ARVY +CC
Sbjct: 63  CAATCPKAEARVYVDCC 79



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>ATRIP_DROME (Q9VVN4) ATR-interacting protein mus304 (Mutagen-sensivite protein|
           304)
          Length = 846

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 507 FGEDTVQRKSSRRKRSCMISSLTPRPNPRLPSETDLCSRLSAHKSSPGHMTLNGA 343
           F +   Q+K+  R  +  +S L   P+P     +   +RL+ H+S PG  T NG+
Sbjct: 270 FSKLKTQQKAHERSMNSSMSILQAAPDPLEKRLSLRLNRLNIHRSVPGLKTDNGS 324



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>KPC1B_CAEEL (P34885) Protein kinase C-like 1B (EC 2.7.11.13) (PKC1B)|
          Length = 707

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 382 TQVKPRPHDPQWREIITVKKASKRAAFAFVFVTGCI 275
           TQV+P+ ++P+W E  T     +  A  F     C+
Sbjct: 52  TQVRPKTNEPRWNEEFTASGVHQGKAIGFSVFHSCV 87



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>DIS3_SCHPO (P37202) Mitotic control protein dis3|
          Length = 970

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +3

Query: 138 ASPSNKMLRLHS----TCFCSSLQILRCSTGMHISCSTS 242
           A P   +LR H+    T F S   ILR   GMH+ C TS
Sbjct: 710 AFPQTAVLRRHAAPPLTNFDSLQDILRVCKGMHLKCDTS 748


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,602,844
Number of Sequences: 219361
Number of extensions: 1659112
Number of successful extensions: 5449
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5448
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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