ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20m22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHR2_SCHPO (O94486) Chitin synthase regulatory factor 2 (Chs fou... 33 0.84
2ISA1_YEAST (Q07821) Iron sulfur assembly protein 1 30 5.4
3ARLY_VIBVY (Q7MH73) Bifunctional protein argH [Includes: Arginin... 30 7.1
4ARLY_VIBVU (Q8DCM9) Bifunctional protein argH [Includes: Arginin... 30 7.1
5KAD_STRCO (P43414) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transp... 29 9.3
6GLR22_ARATH (Q9SHV1) Glutamate receptor 2.2 precursor (Ligand-ga... 29 9.3

>CHR2_SCHPO (O94486) Chitin synthase regulatory factor 2 (Chs four homolog 2)|
          Length = 512

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = +1

Query: 40  SASHTEHYYTLT-HKHIEIICKNIAEQSFRAYITWSACLGLKN---TPGRGAESPRKGSP 207
           SAS+ +    L+  K +EI+ K  +EQ+F + + +SA + +KN     G     P    P
Sbjct: 71  SASNIQSQRNLSPFKELEIVSKKKSEQTFSSAVDFSA-INVKNLNLKSGLFDPEPPSYDP 129

Query: 208 DIALSRRGLIGDKGKRVIF 264
           D A ++R L  D G   +F
Sbjct: 130 DYAFNQRSLQSDPGSDEMF 148



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>ISA1_YEAST (Q07821) Iron sulfur assembly protein 1|
          Length = 250

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
 Frame = +3

Query: 210 HRSLSKGADWRQGQKGHFHSLTTL*KCYQHDGIDETKPRVLESPQSESRAKR*DPMKF-R 386
           HR LS G  WR G  G           ++   I +T P   +S   +S+     P KF  
Sbjct: 15  HRFLSTGGFWRGGTNGTMSRTINNVNPFKLKFIPKTVPAAADSVSPDSQRPGKKPFKFIV 74

Query: 387 DLSIKINSYKQVPDWKQNAPPGR 455
               K +   + P W   A P R
Sbjct: 75  SNQSKSSKASKSPKWSSYAFPSR 97



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>ARLY_VIBVY (Q7MH73) Bifunctional protein argH [Includes: Argininosuccinate|
           lyase (EC 4.3.2.1) (Arginosuccinase) (ASAL); Probable
           acetyltransferase (EC 2.3.1.-)]
          Length = 624

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 177 SSGSILQPQASRPCDICPKALLCDVLAYYFNM 82
           +S S+L  +  + CD CP+   CD +A  FN+
Sbjct: 582 TSKSLLPEKVLKDCDQCPRQHACDEVALEFNL 613



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>ARLY_VIBVU (Q8DCM9) Bifunctional protein argH [Includes: Argininosuccinate|
           lyase (EC 4.3.2.1) (Arginosuccinase) (ASAL); Probable
           acetyltransferase (EC 2.3.1.-)]
          Length = 624

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 177 SSGSILQPQASRPCDICPKALLCDVLAYYFNM 82
           +S S+L  +  + CD CP+   CD +A  FN+
Sbjct: 582 TSKSLLPEKVLKDCDQCPRQHACDEVALEFNL 613



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>KAD_STRCO (P43414) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)|
          Length = 217

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +2

Query: 98  ARTSQSKALGHISHGRLAWG*RILPEEVLRVRGKDRQTSLSLEGG*LETRAKGSFSQSHH 277
           A  SQ   LG ++   +  G  ++P+EV     KDR      EGG L      + SQ+  
Sbjct: 37  ANISQQTELGKLAKSYMNAG-NLVPDEVTIAMAKDRMEQPDAEGGFLLDGFPRNVSQAEA 95

Query: 278 LVKMLST 298
           L ++L T
Sbjct: 96  LDELLET 102



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>GLR22_ARATH (Q9SHV1) Glutamate receptor 2.2 precursor (Ligand-gated ion channel|
           2.2)
          Length = 920

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +1

Query: 226 RGLIGDKGKRVIFTVSPPCENAINMTGSTRRSRGFWNHLNRSPEQKDKTR*SLGT 390
           +GL GD    V   + P     +NM G+  RS GFW   N   ++ D+   S+GT
Sbjct: 368 KGLAGDF-HFVSGQLQPSVFEIVNMIGTGERSIGFWTEGNGLVKKLDQEPRSIGT 421


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,721,166
Number of Sequences: 219361
Number of extensions: 1977885
Number of successful extensions: 4664
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4662
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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