ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20m22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.13
2gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genom... 46 0.13
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
4gb|DQ284531.1| Gallus gallus growth hormone-releasing hormone re... 44 0.53
5ref|NM_185887.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.1
6ref|NM_194372.1| Danio rerio wu:fc23f06 (wu:fc23f06), mRNA 42 2.1
7gb|AC125094.5| Mus musculus BAC clone RP24-176L12 from chromosom... 42 2.1
8emb|BX649466.19| Zebrafish DNA sequence from clone DKEY-31C8 in ... 42 2.1
9gb|AC161816.5| Mus musculus BAC clone RP23-308L3 from chromosome... 42 2.1
10emb|AL713958.11| Mouse DNA sequence from clone RP23-370F7 on chr... 42 2.1
11gb|AF250352.1|AF250352 Danio rerio hepatocyte nuclear factor 1-g... 42 2.1
12dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
13dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
14gb|AC152453.4| Mus musculus BAC clone RP24-238B3 from chromosome... 42 2.1
15dbj|AP005810.4| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
16dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
17gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
18emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb... 42 2.1
19gb|AC112790.5| Mus musculus BAC clone RP23-160A1 from 10, comple... 42 2.1
20ref|XM_521900.1| PREDICTED: Pan troglodytes similar to filamin-b... 40 8.2
21gb|AC129014.4| Mus musculus BAC clone RP24-317F20 from chromosom... 40 8.2
22gb|AC092981.3| Homo sapiens 3 BAC RP11-305I9 (Roswell Park Cance... 40 8.2
23emb|BX897699.1| Bartonella henselae strain Houston-1, complete g... 40 8.2
24gb|AC068359.11| Homo sapiens chromosome 8, clone RP11-468C1, com... 40 8.2
25gb|AC083977.5| Homo sapiens chromosome 8, clone RP11-317J8, comp... 40 8.2
26gb|AC084741.4| Homo sapiens BAC clone RP11-537K6 from 4, complet... 40 8.2
27gb|AC161418.4| Mus musculus BAC clone RP23-325K2 from chromosome... 40 8.2
28gb|AC010365.5|AC010365 Homo sapiens chromosome 19 clone CTD-2043... 40 8.2
29gb|AC151730.5| Mus musculus BAC clone RP24-84E18 from chromosome... 40 8.2
30dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 8.2
31emb|CT030184.14| Mouse DNA sequence from clone RP23-9C19 on chro... 40 8.2
32gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, comple... 40 8.2
33emb|AJ718048.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT24-2-31... 40 8.2
34emb|Y08557.1|TEMELA Thermoanaerobacter ethanolicus melA gene for... 40 8.2
35gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome 40 8.2
36emb|CT030166.8| Mouse DNA sequence from clone RP23-320I11 on chr... 40 8.2
37gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 8.2
38gb|AC134623.5| Mus musculus BAC clone RP23-20K21 from 8, complet... 40 8.2
39gb|AC161877.5| Mus musculus BAC clone RP23-350G11 from chromosom... 40 8.2
40emb|AL645524.8| Mouse DNA sequence from clone RP23-35D7 on chrom... 40 8.2
41gb|M59301.1|PSECOMPA P.denitrificans cobF through cobM genes, co... 40 8.2

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 241      gacaagggcaaaagggtcattttcaca 267
                |||||||||||| ||||||||||||||
Sbjct: 32934366 gacaagggcaaatgggtcattttcaca 32934340



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>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete
             sequence
          Length = 151479

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 241   gacaagggcaaaagggtcattttcaca 267
             |||||||||||| ||||||||||||||
Sbjct: 55809 gacaagggcaaatgggtcattttcaca 55835



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 241      gacaagggcaaaagggtcattttcaca 267
                |||||||||||| ||||||||||||||
Sbjct: 33024876 gacaagggcaaatgggtcattttcaca 33024850



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>gb|DQ284531.1| Gallus gallus growth hormone-releasing hormone receptor (GHRHR) gene,
            complete cds
          Length = 22010

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 61   tactatacactcacacataagcatat 86
            ||||||||||| ||||||||||||||
Sbjct: 3198 tactatacacttacacataagcatat 3173



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>ref|NM_185887.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2019

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 303 gggatcgacgagacgaagccg 323
           |||||||||||||||||||||
Sbjct: 674 gggatcgacgagacgaagccg 654



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>ref|NM_194372.1| Danio rerio wu:fc23f06 (wu:fc23f06), mRNA
          Length = 3575

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 327  gttttggaatcacctcaatcg 347
            |||||||||||||||||||||
Sbjct: 3476 gttttggaatcacctcaatcg 3496



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>gb|AC125094.5| Mus musculus BAC clone RP24-176L12 from chromosome 16, complete sequence
          Length = 170842

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 399    aaaataaattcctacaaacag 419
              |||||||||||||||||||||
Sbjct: 122101 aaaataaattcctacaaacag 122081



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>emb|BX649466.19| Zebrafish DNA sequence from clone DKEY-31C8 in linkage group 12,
             complete sequence
          Length = 101015

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 396   ataaaaataaattcctacaaacagg 420
             ||||||||||||||||||| |||||
Sbjct: 73541 ataaaaataaattcctacacacagg 73565



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>gb|AC161816.5| Mus musculus BAC clone RP23-308L3 from chromosome 16, complete
            sequence
          Length = 213324

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 399  aaaataaattcctacaaacag 419
            |||||||||||||||||||||
Sbjct: 9203 aaaataaattcctacaaacag 9223



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>emb|AL713958.11| Mouse DNA sequence from clone RP23-370F7 on chromosome 11 Contains the
             5' end of a novel gene, the 3' end of the Cyfip2 gene for
             cytoplasmic FMR1 interacting protein 2 and a CpG island,
             complete sequence
          Length = 105696

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 228   ggggctgattggagacaaggg 248
             |||||||||||||||||||||
Sbjct: 39789 ggggctgattggagacaaggg 39769



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>gb|AF250352.1|AF250352 Danio rerio hepatocyte nuclear factor 1-gamma mRNA, complete cds
          Length = 3575

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 327  gttttggaatcacctcaatcg 347
            |||||||||||||||||||||
Sbjct: 3476 gttttggaatcacctcaatcg 3496



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 244      aagggcaaaagggtcattttc 264
                |||||||||||||||||||||
Sbjct: 10303256 aagggcaaaagggtcattttc 10303236



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 303      gggatcgacgagacgaagccg 323
                |||||||||||||||||||||
Sbjct: 21088115 gggatcgacgagacgaagccg 21088095



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>gb|AC152453.4| Mus musculus BAC clone RP24-238B3 from chromosome 10, complete sequence
          Length = 182371

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 388   acctatccataaaaataaatt 408
             |||||||||||||||||||||
Sbjct: 90246 acctatccataaaaataaatt 90266



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>dbj|AP005810.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0696F12
          Length = 165227

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 303  gggatcgacgagacgaagccg 323
            |||||||||||||||||||||
Sbjct: 9476 gggatcgacgagacgaagccg 9456



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>dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1058_A12
          Length = 152269

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 303    gggatcgacgagacgaagccg 323
              |||||||||||||||||||||
Sbjct: 131414 gggatcgacgagacgaagccg 131394



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 244      aagggcaaaagggtcattttc 264
                |||||||||||||||||||||
Sbjct: 10303138 aagggcaaaagggtcattttc 10303118



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>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135439

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 244   aagggcaaaagggtcattttc 264
             |||||||||||||||||||||
Sbjct: 66175 aagggcaaaagggtcattttc 66155



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>gb|AC112790.5| Mus musculus BAC clone RP23-160A1 from 10, complete sequence
          Length = 211714

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 388    acctatccataaaaataaatt 408
              |||||||||||||||||||||
Sbjct: 203132 acctatccataaaaataaatt 203152



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>ref|XM_521900.1| PREDICTED: Pan troglodytes similar to filamin-binding LIM
           protein-1; likely ortholog of mouse CSX-associated LIM
           (LOC466501), mRNA
          Length = 1281

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 504 taagcgcgggggcccggggc 523
           ||||||||||||||||||||
Sbjct: 151 taagcgcgggggcccggggc 132



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>gb|AC129014.4| Mus musculus BAC clone RP24-317F20 from chromosome 19, complete
             sequence
          Length = 175855

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    aaataatatgcaagaacatc 108
             ||||||||||||||||||||
Sbjct: 71100 aaataatatgcaagaacatc 71119



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>gb|AC092981.3| Homo sapiens 3 BAC RP11-305I9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160000

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 377   gaagtttagggacctatcca 396
             ||||||||||||||||||||
Sbjct: 76767 gaagtttagggacctatcca 76786



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>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     ccttattgaagaaaatgcga 29
              ||||||||||||||||||||
Sbjct: 614554 ccttattgaagaaaatgcga 614535



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>gb|AC068359.11| Homo sapiens chromosome 8, clone RP11-468C1, complete sequence
          Length = 186457

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     ataagcatattgaaataata 96
              ||||||||||||||||||||
Sbjct: 160885 ataagcatattgaaataata 160866



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>gb|AC083977.5| Homo sapiens chromosome 8, clone RP11-317J8, complete sequence
          Length = 212555

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    ataagcatattgaaataata 96
             ||||||||||||||||||||
Sbjct: 24652 ataagcatattgaaataata 24633



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>gb|AC084741.4| Homo sapiens BAC clone RP11-537K6 from 4, complete sequence
          Length = 146143

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    attgaaataatatgcaagaa 104
             ||||||||||||||||||||
Sbjct: 71190 attgaaataatatgcaagaa 71171



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>gb|AC161418.4| Mus musculus BAC clone RP23-325K2 from chromosome 3, complete sequence
          Length = 202765

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      ttccttattgaagaaaatgc 27
              ||||||||||||||||||||
Sbjct: 191926 ttccttattgaagaaaatgc 191907



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>gb|AC010365.5|AC010365 Homo sapiens chromosome 19 clone CTD-2043I16, complete sequence
          Length = 106146

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   gaaaatgctatcaacatgac 302
             ||||||||||||||||||||
Sbjct: 43891 gaaaatgctatcaacatgac 43910



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>gb|AC151730.5| Mus musculus BAC clone RP24-84E18 from chromosome 19, complete sequence
          Length = 222459

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    aaataatatgcaagaacatc 108
             ||||||||||||||||||||
Sbjct: 15129 aaataatatgcaagaacatc 15148



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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 442    cgcctccgggccgagtacgc 461
              ||||||||||||||||||||
Sbjct: 676903 cgcctccgggccgagtacgc 676884



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>emb|CT030184.14| Mouse DNA sequence from clone RP23-9C19 on chromosome 13, complete
             sequence
          Length = 201341

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   aaaagggtcattttcacagt 269
             ||||||||||||||||||||
Sbjct: 38225 aaaagggtcattttcacagt 38244



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>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence
          Length = 187148

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     cagcatctcatacagaacat 60
              ||||||||||||||||||||
Sbjct: 150179 cagcatctcatacagaacat 150160



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>emb|AJ718048.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT24-2-310, cultivar Bright
           Yellow 2
          Length = 239

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 243 caagggcaaaagggtcattt 262
           ||||||||||||||||||||
Sbjct: 115 caagggcaaaagggtcattt 134



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>emb|Y08557.1|TEMELA Thermoanaerobacter ethanolicus melA gene for melibiase, lacA gene for
            beta-galactosidase and ORF3 DNA for hypothetical protein
          Length = 4936

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 398  aaaaataaattcctacaaac 417
            ||||||||||||||||||||
Sbjct: 4189 aaaaataaattcctacaaac 4208



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>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome
          Length = 2178400

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 234    gattggagacaagggcaaaagggt 257
              |||||||||||||||||| |||||
Sbjct: 858969 gattggagacaagggcaagagggt 858992



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>emb|CT030166.8| Mouse DNA sequence from clone RP23-320I11 on chromosome 13, complete
              sequence
          Length = 222942

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 250    aaaagggtcattttcacagt 269
              ||||||||||||||||||||
Sbjct: 178118 aaaagggtcattttcacagt 178137



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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 442    cgcctccgggccgagtacgc 461
              ||||||||||||||||||||
Sbjct: 347542 cgcctccgggccgagtacgc 347523



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>gb|AC134623.5| Mus musculus BAC clone RP23-20K21 from 8, complete sequence
          Length = 234976

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     cagcatctcatacagaacat 60
              ||||||||||||||||||||
Sbjct: 212879 cagcatctcatacagaacat 212898



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>gb|AC161877.5| Mus musculus BAC clone RP23-350G11 from chromosome 14, complete sequence
          Length = 227413

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    gcagagcaaagctttagggc 128
              ||||||||||||||||||||
Sbjct: 168524 gcagagcaaagctttagggc 168543



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>emb|AL645524.8| Mouse DNA sequence from clone RP23-35D7 on chromosome 11, complete
              sequence
          Length = 210163

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     atacactcacacataagcat 84
              ||||||||||||||||||||
Sbjct: 116000 atacactcacacataagcat 115981



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>gb|M59301.1|PSECOMPA P.denitrificans cobF through cobM genes, complete cds
          Length = 8753

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 305  gatcgacgagacgaagccga 324
            ||||||||||||||||||||
Sbjct: 8397 gatcgacgagacgaagccga 8416


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,652,420
Number of Sequences: 3902068
Number of extensions: 5652420
Number of successful extensions: 101470
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101169
Number of HSP's gapped (non-prelim): 301
length of query: 605
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 582
effective length of database: 17,143,297,704
effective search space: 9977399263728
effective search space used: 9977399263728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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