Clone Name | rbasd20m22 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 241 gacaagggcaaaagggtcattttcaca 267 |||||||||||| |||||||||||||| Sbjct: 32934366 gacaagggcaaatgggtcattttcaca 32934340
>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete sequence Length = 151479 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 241 gacaagggcaaaagggtcattttcaca 267 |||||||||||| |||||||||||||| Sbjct: 55809 gacaagggcaaatgggtcattttcaca 55835
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 241 gacaagggcaaaagggtcattttcaca 267 |||||||||||| |||||||||||||| Sbjct: 33024876 gacaagggcaaatgggtcattttcaca 33024850
>gb|DQ284531.1| Gallus gallus growth hormone-releasing hormone receptor (GHRHR) gene, complete cds Length = 22010 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 61 tactatacactcacacataagcatat 86 ||||||||||| |||||||||||||| Sbjct: 3198 tactatacacttacacataagcatat 3173
>ref|NM_185887.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2019 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 gggatcgacgagacgaagccg 323 ||||||||||||||||||||| Sbjct: 674 gggatcgacgagacgaagccg 654
>ref|NM_194372.1| Danio rerio wu:fc23f06 (wu:fc23f06), mRNA Length = 3575 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 327 gttttggaatcacctcaatcg 347 ||||||||||||||||||||| Sbjct: 3476 gttttggaatcacctcaatcg 3496
>gb|AC125094.5| Mus musculus BAC clone RP24-176L12 from chromosome 16, complete sequence Length = 170842 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 399 aaaataaattcctacaaacag 419 ||||||||||||||||||||| Sbjct: 122101 aaaataaattcctacaaacag 122081
>emb|BX649466.19| Zebrafish DNA sequence from clone DKEY-31C8 in linkage group 12, complete sequence Length = 101015 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 396 ataaaaataaattcctacaaacagg 420 ||||||||||||||||||| ||||| Sbjct: 73541 ataaaaataaattcctacacacagg 73565
>gb|AC161816.5| Mus musculus BAC clone RP23-308L3 from chromosome 16, complete sequence Length = 213324 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 399 aaaataaattcctacaaacag 419 ||||||||||||||||||||| Sbjct: 9203 aaaataaattcctacaaacag 9223
>emb|AL713958.11| Mouse DNA sequence from clone RP23-370F7 on chromosome 11 Contains the 5' end of a novel gene, the 3' end of the Cyfip2 gene for cytoplasmic FMR1 interacting protein 2 and a CpG island, complete sequence Length = 105696 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 228 ggggctgattggagacaaggg 248 ||||||||||||||||||||| Sbjct: 39789 ggggctgattggagacaaggg 39769
>gb|AF250352.1|AF250352 Danio rerio hepatocyte nuclear factor 1-gamma mRNA, complete cds Length = 3575 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 327 gttttggaatcacctcaatcg 347 ||||||||||||||||||||| Sbjct: 3476 gttttggaatcacctcaatcg 3496
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 aagggcaaaagggtcattttc 264 ||||||||||||||||||||| Sbjct: 10303256 aagggcaaaagggtcattttc 10303236
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 gggatcgacgagacgaagccg 323 ||||||||||||||||||||| Sbjct: 21088115 gggatcgacgagacgaagccg 21088095
>gb|AC152453.4| Mus musculus BAC clone RP24-238B3 from chromosome 10, complete sequence Length = 182371 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 acctatccataaaaataaatt 408 ||||||||||||||||||||| Sbjct: 90246 acctatccataaaaataaatt 90266
>dbj|AP005810.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0696F12 Length = 165227 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 gggatcgacgagacgaagccg 323 ||||||||||||||||||||| Sbjct: 9476 gggatcgacgagacgaagccg 9456
>dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_A12 Length = 152269 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 gggatcgacgagacgaagccg 323 ||||||||||||||||||||| Sbjct: 131414 gggatcgacgagacgaagccg 131394
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 aagggcaaaagggtcattttc 264 ||||||||||||||||||||| Sbjct: 10303138 aagggcaaaagggtcattttc 10303118
>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135439 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 aagggcaaaagggtcattttc 264 ||||||||||||||||||||| Sbjct: 66175 aagggcaaaagggtcattttc 66155
>gb|AC112790.5| Mus musculus BAC clone RP23-160A1 from 10, complete sequence Length = 211714 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 388 acctatccataaaaataaatt 408 ||||||||||||||||||||| Sbjct: 203132 acctatccataaaaataaatt 203152
>ref|XM_521900.1| PREDICTED: Pan troglodytes similar to filamin-binding LIM protein-1; likely ortholog of mouse CSX-associated LIM (LOC466501), mRNA Length = 1281 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 taagcgcgggggcccggggc 523 |||||||||||||||||||| Sbjct: 151 taagcgcgggggcccggggc 132
>gb|AC129014.4| Mus musculus BAC clone RP24-317F20 from chromosome 19, complete sequence Length = 175855 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 aaataatatgcaagaacatc 108 |||||||||||||||||||| Sbjct: 71100 aaataatatgcaagaacatc 71119
>gb|AC092981.3| Homo sapiens 3 BAC RP11-305I9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160000 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 gaagtttagggacctatcca 396 |||||||||||||||||||| Sbjct: 76767 gaagtttagggacctatcca 76786
>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome Length = 1931047 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 ccttattgaagaaaatgcga 29 |||||||||||||||||||| Sbjct: 614554 ccttattgaagaaaatgcga 614535
>gb|AC068359.11| Homo sapiens chromosome 8, clone RP11-468C1, complete sequence Length = 186457 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 ataagcatattgaaataata 96 |||||||||||||||||||| Sbjct: 160885 ataagcatattgaaataata 160866
>gb|AC083977.5| Homo sapiens chromosome 8, clone RP11-317J8, complete sequence Length = 212555 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 ataagcatattgaaataata 96 |||||||||||||||||||| Sbjct: 24652 ataagcatattgaaataata 24633
>gb|AC084741.4| Homo sapiens BAC clone RP11-537K6 from 4, complete sequence Length = 146143 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 attgaaataatatgcaagaa 104 |||||||||||||||||||| Sbjct: 71190 attgaaataatatgcaagaa 71171
>gb|AC161418.4| Mus musculus BAC clone RP23-325K2 from chromosome 3, complete sequence Length = 202765 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ttccttattgaagaaaatgc 27 |||||||||||||||||||| Sbjct: 191926 ttccttattgaagaaaatgc 191907
>gb|AC010365.5|AC010365 Homo sapiens chromosome 19 clone CTD-2043I16, complete sequence Length = 106146 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 gaaaatgctatcaacatgac 302 |||||||||||||||||||| Sbjct: 43891 gaaaatgctatcaacatgac 43910
>gb|AC151730.5| Mus musculus BAC clone RP24-84E18 from chromosome 19, complete sequence Length = 222459 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 aaataatatgcaagaacatc 108 |||||||||||||||||||| Sbjct: 15129 aaataatatgcaagaacatc 15148
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 cgcctccgggccgagtacgc 461 |||||||||||||||||||| Sbjct: 676903 cgcctccgggccgagtacgc 676884
>emb|CT030184.14| Mouse DNA sequence from clone RP23-9C19 on chromosome 13, complete sequence Length = 201341 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 aaaagggtcattttcacagt 269 |||||||||||||||||||| Sbjct: 38225 aaaagggtcattttcacagt 38244
>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence Length = 187148 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 cagcatctcatacagaacat 60 |||||||||||||||||||| Sbjct: 150179 cagcatctcatacagaacat 150160
>emb|AJ718048.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT24-2-310, cultivar Bright Yellow 2 Length = 239 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 caagggcaaaagggtcattt 262 |||||||||||||||||||| Sbjct: 115 caagggcaaaagggtcattt 134
>emb|Y08557.1|TEMELA Thermoanaerobacter ethanolicus melA gene for melibiase, lacA gene for beta-galactosidase and ORF3 DNA for hypothetical protein Length = 4936 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 aaaaataaattcctacaaac 417 |||||||||||||||||||| Sbjct: 4189 aaaaataaattcctacaaac 4208
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome Length = 2178400 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 gattggagacaagggcaaaagggt 257 |||||||||||||||||| ||||| Sbjct: 858969 gattggagacaagggcaagagggt 858992
>emb|CT030166.8| Mouse DNA sequence from clone RP23-320I11 on chromosome 13, complete sequence Length = 222942 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 aaaagggtcattttcacagt 269 |||||||||||||||||||| Sbjct: 178118 aaaagggtcattttcacagt 178137
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 cgcctccgggccgagtacgc 461 |||||||||||||||||||| Sbjct: 347542 cgcctccgggccgagtacgc 347523
>gb|AC134623.5| Mus musculus BAC clone RP23-20K21 from 8, complete sequence Length = 234976 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 cagcatctcatacagaacat 60 |||||||||||||||||||| Sbjct: 212879 cagcatctcatacagaacat 212898
>gb|AC161877.5| Mus musculus BAC clone RP23-350G11 from chromosome 14, complete sequence Length = 227413 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 gcagagcaaagctttagggc 128 |||||||||||||||||||| Sbjct: 168524 gcagagcaaagctttagggc 168543
>emb|AL645524.8| Mouse DNA sequence from clone RP23-35D7 on chromosome 11, complete sequence Length = 210163 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 atacactcacacataagcat 84 |||||||||||||||||||| Sbjct: 116000 atacactcacacataagcat 115981
>gb|M59301.1|PSECOMPA P.denitrificans cobF through cobM genes, complete cds Length = 8753 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 gatcgacgagacgaagccga 324 |||||||||||||||||||| Sbjct: 8397 gatcgacgagacgaagccga 8416 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,652,420 Number of Sequences: 3902068 Number of extensions: 5652420 Number of successful extensions: 101470 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101169 Number of HSP's gapped (non-prelim): 301 length of query: 605 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 582 effective length of database: 17,143,297,704 effective search space: 9977399263728 effective search space used: 9977399263728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)