ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20m20 |
|---|---|
| Clone Library Name | barley_pub |
>ATX3_ARATH (Q9M364) Histone-lysine N-methyltransferase ATX3 (EC 2.1.1.43)| (Trithorax-homolog protein 3) (TRX-homolog protein 3) (Protein SET DOMAIN GROUP 14) Length = 902 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/56 (33%), Positives = 25/56 (44%) Frame = -1 Query: 508 GECCLLCHSSAPGDWVNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGLEYICPHCSI 341 G C + H S GDWV C C W H CD T + + + + Y CP C + Sbjct: 352 GICKRIWHPSDDGDWVCCDGCDVWVHAECDNI----TNERFKELEHNNYYCPDCKV 403
>ATX5_ARATH (Q8GZ42) Histone-lysine N-methyltransferase ATX5 (EC 2.1.1.43)| (Trithorax-homolog protein 5) (TRX-homolog protein 5) (Protein SET DOMAIN GROUP 29) Length = 1043 Score = 37.4 bits (85), Expect = 0.033 Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 5/86 (5%) Frame = -1 Query: 514 VDGECCLLCHSSAPGDWVNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGLEYICPHCSI-- 341 V G C + + WV C C W H CD+ FKD +TD Y CP C Sbjct: 415 VCGICKRIWNHLDSQSWVRCDGCKVWIHSACDQISH-KHFKDLGETD---YYCPTCRTKF 470 Query: 340 ---ANYKKKPPPPQKVTNGFANTVLP 272 + +KP K+ A VLP Sbjct: 471 DFELSDSEKPDSKSKLGKNNAPMVLP 496
>MSC1_SCHPO (Q9UT79) Multicopy suppressor of chk1 protein 1| Length = 1588 Score = 32.3 bits (72), Expect = 1.1 Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 6/100 (6%) Frame = -1 Query: 598 TNRMTGVGNTLKRHY--ETYLLEYELSHDDVDGECCLLCHSSAPGDWVNCGLCGEWAHFG 425 TN M G+ H E Y++ D D C C G + C LC EW H Sbjct: 1142 TNAMVDEGSDAPFHVGNEYYVIA---GSDPSDFHYCF-CRQPEAGMMIECELCHEWYHAK 1197 Query: 424 CDRRQGLGTFKDYAKTDGLEYICPHC----SIANYKKKPP 317 C + K + D ++ICP C + + +PP Sbjct: 1198 CMKMS-----KKKLRADE-KFICPICDYRVEVPRHSHRPP 1231
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3| homolog (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 32.3 bits (72), Expect = 1.1 Identities = 17/64 (26%), Positives = 24/64 (37%) Frame = -1 Query: 502 CCLLCHSSAPGDWVNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGLEYICPHCSIANYKKK 323 C H D ++C +C W H CD+ T + EYIC +C + Sbjct: 470 CGKCYHPELQKDMLHCNMCKRWVHLECDK----PTDHELDTQLKEEYICMYCKHLGAEMD 525 Query: 322 PPPP 311 P P Sbjct: 526 PLQP 529
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3| homolog (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 31.2 bits (69), Expect = 2.4 Identities = 14/52 (26%), Positives = 22/52 (42%) Frame = -1 Query: 502 CCLLCHSSAPGDWVNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGLEYICPHC 347 C H D ++C +C W H CD+ T ++ +YIC +C Sbjct: 469 CGKCYHPELQKDMLHCNMCKRWVHLECDK----PTDQELDSQLKEDYICMYC 516
>TRX_DROME (P20659) Protein trithorax| Length = 3726 Score = 31.2 bits (69), Expect = 2.4 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Frame = -1 Query: 499 CLLCHSSAPGD--WVNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGLEYICPHCSIANYKK 326 C C+ D + CG CG+W H C+ + +E+IC C+ N Sbjct: 1427 CQRCYDDNDFDLKMMECGDCGQWVHSKCEGLSDEQYNLLSTLPESIEFICKKCARRNESS 1486 Query: 325 K 323 K Sbjct: 1487 K 1487
>DIDO1_MOUSE (Q8C9B9) Death-inducer obliterator 1 (DIO-1) (Death-associated| transcription factor 1) (DATF-1) (Fragments) Length = 1956 Score = 29.6 bits (65), Expect = 6.9 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Frame = -1 Query: 457 CGLCGEWAHFGCDRRQGLGTFKD-YAKTDGLEYICPHCSIANYKKKPPPPQKVTNGFA 287 C C EW H C G+ + + +G +YICP+C+I Q TNG A Sbjct: 282 CDRCEEWFHGDC---VGISEARGRLLERNGEDYICPNCTILQV-------QDETNGSA 329
>ORB2_DROME (Q9VSR3) Probable RNA-binding protein orb2| Length = 704 Score = 29.6 bits (65), Expect = 6.9 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = +3 Query: 366 SNPSVFA*SLKVPSPCRLSQPK*AHSPHKP 455 ++PSV+ +LK+ SP RLS HSPH P Sbjct: 404 NDPSVYLNALKMGSPSRLS----PHSPHSP 429
>Y5621_ARATH (O81488) PHD finger protein At5g26210| Length = 255 Score = 29.3 bits (64), Expect = 9.0 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%) Frame = -1 Query: 532 ELSHDDVDGEC-CLLCHSSAPGD--WVNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGL-E 365 E +D GE C C S D W+ C LC W H C + A+ + + + Sbjct: 190 EEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITP-------ARAEHIKQ 242 Query: 364 YICPHCS 344 Y CP CS Sbjct: 243 YKCPSCS 249
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Frame = +1 Query: 367 PTHLSSRNP*KCPALAVYHSRNEP---IRRI-NHSSPNLQERYCDKANSTPHPHRRAIA 531 P LS +P K L + +P + R+ +HS PN Q++ + +S+ HPH++ ++ Sbjct: 4007 PQQLSHSSPCKPNTLVSVNQGVQPPAILTRVGSHSQPNQQQQLPHQQSSSGHPHQKQLS 4065
>DIDO1_HUMAN (Q9BTC0) Death-inducer obliterator 1 (DIO-1) (Death-associated| transcription factor 1) (DATF-1) (hDido1) Length = 2240 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = -1 Query: 457 CGLCGEWAHFGCDRRQGLGTFKD-YAKTDGLEYICPHCSI 341 C C EW H C G+ + + +G +YICP+C+I Sbjct: 285 CDRCEEWFHGDC---VGISEARGRLLERNGEDYICPNCTI 321 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,885,645 Number of Sequences: 219361 Number of extensions: 1692025 Number of successful extensions: 4041 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3881 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4038 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
