ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20m15 |
|---|---|
| Clone Library Name | barley_pub |
>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34| (eIF-(iso)4F p82-34) Length = 788 Score = 47.0 bits (110), Expect = 4e-05 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%) Frame = -1 Query: 511 KISKLLEEYNTGGDLKEACQCIRDLGMPFFNHEVVKKALVMAMEKQNE--ASILALLQEC 338 K + LLEEY L EA QCI +L P ++ E+VK+A+ +A++K ++ LL+ Sbjct: 626 KTASLLEEYFGIRILDEAQQCIEELQSPDYHPEIVKEAINLALDKGASFVDPLVKLLEHL 685 Query: 337 SGEGLITINQMTNGFARVKEGLDDLTLDIPNAQEKF 230 + + NG L+D+ +D+P A +F Sbjct: 686 YTKKTFKTEDLENGCLLYGSLLEDIGIDLPKAPTQF 721
>IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) Length = 1600 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Frame = -1 Query: 532 AVEDAKDKISKLLEEYNTGGDLKEACQCIRDLGMPFFNHEVVKKALVMAMEKQNEA--SI 359 +V++ + K ++EEY D+KEA QC+++L P V+ + +E+ A + Sbjct: 1238 SVDEVEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRLGIESTLERSTIAREHM 1297 Query: 358 LALLQECSGEGLITINQMTNGFARVKEGLDDLTLDIPN 245 LL + G ++ Q G E +D+ +DIP+ Sbjct: 1298 GRLLHQLLCAGHLSTAQYYQGLYETLELAEDMEIDIPH 1335
>IF4G1_RABIT (P41110) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1402 Score = 42.0 bits (97), Expect = 0.001 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%) Frame = -1 Query: 526 EDAKDKISKLLEEYNTGGDLKEACQCIRDLGMPFFNHEVVKKALVMAMEKQNEA--SILA 353 E+ + K ++EEY D+KEA QC+++L P V+ + +E+ A + Sbjct: 1043 EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGIESTLERSAIARERMGQ 1102 Query: 352 LLQECSGEGLITINQMTNGFARVKEGLDDLTLDIPN 245 LL + G ++ Q G + E +D+ +DIP+ Sbjct: 1103 LLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPH 1138
>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1600 Score = 42.0 bits (97), Expect = 0.001 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 5/99 (5%) Frame = -1 Query: 526 EDAKDKISKLLEEYNTGGDLKEACQCIRDLGMP-----FFNHEVVKKALVMAMEKQNEAS 362 E+ + K ++EEY D+KEA QC+++L P F H V A+ +++ Sbjct: 1241 EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQ 1300 Query: 361 ILALLQECSGEGLITINQMTNGFARVKEGLDDLTLDIPN 245 +L L C+G ++ Q G + E +D+ +DIP+ Sbjct: 1301 LLHQLL-CAGH--LSTAQYYQGLYEILELAEDMEIDIPH 1336
>IF4G2_HUMAN (P78344) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Death-associated protein 5) (DAP-5) Length = 907 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 10/101 (9%) Frame = -1 Query: 520 AKDKISKLLE----EYNTGGDLKEACQCIRDLGMP-FFNHEVVKKALVMAMEKQNE---- 368 +K+++ KL E EY G+ EA +R++ P F E++ K +++++++ +E Sbjct: 540 SKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEK 599 Query: 367 -ASILALLQECSGEGLITINQMTNGFARVKEGLDDLTLDIP 248 +S+++LL++ EG+ T + F V + L +DIP Sbjct: 600 ASSLISLLKQ---EGIATSDNFMQAFLNVLDQCPKLEVDIP 637
>IF4G2_BOVIN (Q95L46) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Fragment) Length = 136 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 10/101 (9%) Frame = -1 Query: 520 AKDKISKLLE----EYNTGGDLKEACQCIRDLGMP-FFNHEVVKKALVMAMEKQNE---- 368 +K+++ KL E EY G+ EA +R++ P F E++ K +++++++ +E Sbjct: 27 SKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEK 86 Query: 367 -ASILALLQECSGEGLITINQMTNGFARVKEGLDDLTLDIP 248 +S+++LL++ EG+ T + F V + L +DIP Sbjct: 87 ASSLISLLKQ---EGIATSDNFMQAFLNVLDQCPKLEVDIP 124
>IF4G2_MOUSE (Q62448) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Novel APOBEC-1 target 1) (Translation repressor NAT1) Length = 906 Score = 39.7 bits (91), Expect = 0.007 Identities = 26/101 (25%), Positives = 55/101 (54%), Gaps = 10/101 (9%) Frame = -1 Query: 520 AKDKISKLLE----EYNTGGDLKEACQCIRDLGMP-FFNHEVVKKALVMAMEKQNE---- 368 +K+++ KL E +Y G+ +A +R++ P F E++ K +++++++ +E Sbjct: 539 SKEELLKLTEAVVTDYLNSGNANDAVSGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEK 598 Query: 367 -ASILALLQECSGEGLITINQMTNGFARVKEGLDDLTLDIP 248 +S+++LL++ EG+ T + F V E L +DIP Sbjct: 599 ASSLISLLKQ---EGIATSDNFMQAFLNVLEQCPKLEVDIP 636
>IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1579 Score = 38.1 bits (87), Expect = 0.019 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Frame = -1 Query: 526 EDAKDKISKLLEEYNTGGDLKEACQCIRDLGMPFFNHEVVKKALVMAMEKQ--NEASILA 353 E+ + K +++E+ D KEA QCI +L H VK + +E+ + Sbjct: 1214 EEVERKSKSIIDEFLHINDFKEATQCIEELSAQGPLHVFVKVGVEFTLERSQITRDHMGH 1273 Query: 352 LLQECSGEGLITINQMTNGFARVKEGLDDLTLDIPN 245 LL + ++ GF+ E DD+ +DIP+ Sbjct: 1274 LLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPH 1309
>IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1585 Score = 37.7 bits (86), Expect = 0.025 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Frame = -1 Query: 526 EDAKDKISKLLEEYNTGGDLKEACQCIRDLGMPFFNHEVVKKALVMAMEKQ--NEASILA 353 E+ + K +++E+ D KEA QC+ +L H V+ + +E+ + Sbjct: 1220 EELERKSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRVGVESTLERSQITRDHMGQ 1279 Query: 352 LLQECSGEGLITINQMTNGFARVKEGLDDLTLDIPN 245 LL + ++ GF+ E DD+ +DIP+ Sbjct: 1280 LLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPH 1315
>FUSA_BURCE (P24126) Fusaric acid resistance protein fusA precursor| Length = 530 Score = 35.0 bits (79), Expect = 0.16 Identities = 24/63 (38%), Positives = 31/63 (49%) Frame = -3 Query: 359 LGSLAGVLRGGADNHQPDDQRFCSCQGRPRRSDP*HPKRAGEVQRLRGACDRARLAATFL 180 LG+ +R G QPDD+R RP R+DP + A E +R G R +L A Sbjct: 371 LGAANAGVRPGGRAIQPDDRRRAQGHRRPGRADP-FARYAEEGRRTLGGRQRPQLPAVAR 429 Query: 179 RLP 171 RLP Sbjct: 430 RLP 432
>MCF2L_MOUSE (Q64096) Guanine nucleotide exchange factor DBS (DBL's big sister)| (MCF2 transforming sequence-like protein) Length = 1149 Score = 33.1 bits (74), Expect = 0.62 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +3 Query: 93 VKTAWV*DIQRYISSSLAVCWGRAQGREAKEGSSQPRSVASST*P 227 +K AWV +I++ ++S L C +Q R ++ S P SST P Sbjct: 933 IKAAWVNEIRKVLTSQLQACREASQHRALEQSHSLPLPTPSSTSP 977
>VIE4_FRG3V (P14358) Immediate-early protein ICP-46| Length = 394 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +2 Query: 173 GGEGR*QPAALCRKLHVASELLLRVWDVKGQIVEAFLDTSK 295 G EG LCR A + R WDV+ +IV+ +LD ++ Sbjct: 262 GPEGEAHIEVLCRYFSDARVAMERAWDVRERIVQCYLDLTE 302
>VPG_PLRVW (P11625) Putative genome-linked protein precursor (VPG) (17 kDa| protein) (ORF 5) Length = 156 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 5/60 (8%) Frame = +3 Query: 408 TTSWL--KKGIPRSRIHWQASFRSPPVLYSSRSLEI---LSFASSTAQPVPPPQQRSILS 572 TTSW K+ P R++ + R + YS ++ I S+ SS+A+P+PPP S++S Sbjct: 69 TTSWATPKEVSPSGRVY--QTVRHSRMEYSRPTMSIRSQASYFSSSARPLPPPPVPSLMS 126
>VPG_PLRVR (P17523) Putative genome-linked protein precursor (VPG) (17 kDa| protein) (ORF 5) Length = 156 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 5/60 (8%) Frame = +3 Query: 408 TTSWL--KKGIPRSRIHWQASFRSPPVLYSSRSLEI---LSFASSTAQPVPPPQQRSILS 572 TTSW K+ P R++ + R + YS ++ I S+ SS+A+P+PPP S++S Sbjct: 69 TTSWATPKEVSPSGRVY--QTVRHSRMEYSRPTMSIRSQASYFSSSARPLPPPPVPSLMS 126
>VPG_PLRV1 (P17524) Putative genome-linked protein precursor (VPG) (17 kDa| protein) (ORF 5) Length = 156 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 5/60 (8%) Frame = +3 Query: 408 TTSWL--KKGIPRSRIHWQASFRSPPVLYSSRSLEI---LSFASSTAQPVPPPQQRSILS 572 TTSW K+ P R++ + R + YS ++ I S+ SS+A+P+PPP S++S Sbjct: 69 TTSWATPKEVSPSGRVY--QTVRHSRMEYSRPTMSIRSQASYFSSSARPLPPPPVPSLMS 126
>VPG_PLRV (P10471) Putative genome-linked protein precursor (VPG) (17 kDa| protein) (ORF 5) Length = 156 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 5/60 (8%) Frame = +3 Query: 408 TTSWL--KKGIPRSRIHWQASFRSPPVLYSSRSLEI---LSFASSTAQPVPPPQQRSILS 572 TTSW K+ P R++ + R + YS ++ I S+ SS+A+P+PPP S++S Sbjct: 69 TTSWATPKEVSPSGRVY--QTVRLSRMEYSRPTMSIRSQASYFSSSARPLPPPPAPSLMS 126
>THYG_HUMAN (P01266) Thyroglobulin precursor| Length = 2768 Score = 30.8 bits (68), Expect = 3.1 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +1 Query: 463 PSGPRRCCTPQGAWRSCPLRLPQPSQCPRP 552 P GP C G W S +LPQP C RP Sbjct: 1258 PPGPLICSLESGRWES---QLPQPRACQRP 1284
>GLMM_YERPS (Q66F64) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 446 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 7/69 (10%) Frame = -1 Query: 448 IRDLGMPFFNHEVVKKALVMAMEK-------QNEASILALLQECSGEGLITINQMTNGFA 290 ++DLG+PF +V + ++ AM++ +N ++ L + +G+G++ Q+ Sbjct: 294 LKDLGIPFVRAKVGDRYVLEAMQEKGWRIGAENSGHVILLDKTTTGDGIVAGLQVLTAMV 353 Query: 289 RVKEGLDDL 263 R L DL Sbjct: 354 RNHMSLHDL 362
>GLMM_YERPE (Q8ZBB8) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 446 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 7/69 (10%) Frame = -1 Query: 448 IRDLGMPFFNHEVVKKALVMAMEK-------QNEASILALLQECSGEGLITINQMTNGFA 290 ++DLG+PF +V + ++ AM++ +N ++ L + +G+G++ Q+ Sbjct: 294 LKDLGIPFVRAKVGDRYVLEAMQEKGWRIGAENSGHVILLDKTTTGDGIVAGLQVLTAMV 353 Query: 289 RVKEGLDDL 263 R L DL Sbjct: 354 RNHMSLHDL 362
>V_PHODV (P35941) Nonstructural protein V| Length = 299 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/38 (47%), Positives = 21/38 (55%) Frame = -3 Query: 569 EDTALLGRGHWLGCGRRKGQDLQAP*GVQHRRGPEGSL 456 E TALLG GH G +R G+ LQ P PEGS+ Sbjct: 189 ELTALLGTGHNAGGQKRDGRTLQFP------NSPEGSI 220
>THYG_BOVIN (P01267) Thyroglobulin precursor| Length = 2769 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/42 (40%), Positives = 18/42 (42%) Frame = +1 Query: 427 RASQGHGYTGRLPSGPRRCCTPQGAWRSCPLRLPQPSQCPRP 552 R SQG Y P P C + W S P PQP C RP Sbjct: 1248 RCSQG--YRSAFPPEPLLCSVQRRRWESRP---PQPRACQRP 1284
>PHOSP_PHODV (P35939) Phosphoprotein (Protein P)| Length = 507 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/38 (47%), Positives = 21/38 (55%) Frame = -3 Query: 569 EDTALLGRGHWLGCGRRKGQDLQAP*GVQHRRGPEGSL 456 E TALLG GH G +R G+ LQ P PEGS+ Sbjct: 189 ELTALLGTGHNAGGQKRDGRTLQFP------NSPEGSI 220
>STE12_EMENI (O74252) Transcription factor steA| Length = 692 Score = 29.3 bits (64), Expect = 9.0 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Frame = +3 Query: 423 KKGIPRSRIHWQASFR------SPPVLYSSRSLEILSFASSTAQPVPPPQQRSILSPE 578 + G+P +RIH + S SP + S E S + +PV PPQ S + PE Sbjct: 291 RNGMPIARIHQRHSSMPTFVEYSPAPSFVSSQYEDYSNRGLSFEPVTPPQHSSHIGPE 348
>CHMP7_XENLA (Q7T0X5) Protein CHMP7| Length = 422 Score = 29.3 bits (64), Expect = 9.0 Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 7/99 (7%) Frame = -1 Query: 529 VEDAKDKISKLLEE---YNTGGDLKEACQCIRDLGMPFFNHEVVKKALVMAMEKQNEASI 359 ++ A ++ ++L EE YN G+ +A +C+R ++V++ + KQ+ +I Sbjct: 240 LQSAGEESNRLTEEARTYNRAGNKNQALRCLR-------KRKLVERRITELQNKQD--NI 290 Query: 358 LALLQECSG----EGLITINQMTNGFARVKEGLDDLTLD 254 +L+ S +++ QM G + +K+ L D+TL+ Sbjct: 291 QGILERISAAETDRKVVSAYQM--GVSALKQALKDVTLE 327
>RHAS_SHIFL (Q83PE0) HTH-type transcriptional activator rhaS (L-rhamnose operon| regulatory protein rhaS) Length = 278 Score = 29.3 bits (64), Expect = 9.0 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = +2 Query: 8 QQPYHTPVYHTISAQKRLGTEEKEVRYGGKDSMGVRYTEVYFFKLSRLLGKSSGQ 172 Q P H V H++ Q R + E + G D E+ F +L LL KSS Q Sbjct: 109 QYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQ 163
>RHAS_ECOLI (P09377) HTH-type transcriptional activator rhaS (L-rhamnose operon| regulatory protein rhaS) Length = 278 Score = 29.3 bits (64), Expect = 9.0 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = +2 Query: 8 QQPYHTPVYHTISAQKRLGTEEKEVRYGGKDSMGVRYTEVYFFKLSRLLGKSSGQ 172 Q P H V H++ Q R + E + G D E+ F +L LL KSS Q Sbjct: 109 QYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQ 163
>RHAS_ECO57 (Q8X897) HTH-type transcriptional activator rhaS (L-rhamnose operon| regulatory protein rhaS) Length = 278 Score = 29.3 bits (64), Expect = 9.0 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = +2 Query: 8 QQPYHTPVYHTISAQKRLGTEEKEVRYGGKDSMGVRYTEVYFFKLSRLLGKSSGQ 172 Q P H V H++ Q R + E + G D E+ F +L LL KSS Q Sbjct: 109 QYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQ 163
>CC021_MOUSE (Q3U4G3) Protein C3orf21 homolog| Length = 392 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -2 Query: 243 RRRSSEATWSLRQSAAGCYLPSPPCPEL 160 R S AT L+++ AG P+PP PEL Sbjct: 45 RETFSSATKRLKEARAGAAAPTPPAPEL 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,353,313 Number of Sequences: 219361 Number of extensions: 1921832 Number of successful extensions: 6824 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 6466 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6814 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
