ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20m13 |
|---|---|
| Clone Library Name | barley_pub |
>MAK2_SCHPO (O14002) Peroxide stress-activated histidine kinase mak2 (EC| 2.7.13.3) (Mcs4-associated kinase 2) (His-Asp phosphorelay kinase phk1) Length = 2310 Score = 34.7 bits (78), Expect = 0.27 Identities = 15/39 (38%), Positives = 25/39 (64%) Frame = -2 Query: 669 AMTADVIQATYEHCLKCEMDGYVSKPFEGEQLYREVTRF 553 A+TAD+ ++ + CL+ M+ Y++KPF +QL V F Sbjct: 2264 ALTADIQKSAKQRCLEVGMNFYLTKPFTQKQLVNAVREF 2302
>MUKB_YERPS (Q66CH3) Chromosome partition protein mukB (Structural maintenance of| chromosome-related protein) Length = 1485 Score = 33.5 bits (75), Expect = 0.59 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Frame = -2 Query: 666 MTADVIQATYEHCLKCEMDGYVSKPF----EGEQLYREVTRFFQNHDHVQ*VGLYG 511 + A I +E C + EM ++ P E Y+ V + FQNH+HV VGL G Sbjct: 1411 LDAKSIATLFELCERLEMQLIIAAPENISPEKGTTYKLVRKVFQNHEHVHVVGLRG 1466
>MUKB_YERPE (Q8ZG99) Chromosome partition protein mukB (Structural maintenance of| chromosome-related protein) Length = 1485 Score = 33.5 bits (75), Expect = 0.59 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Frame = -2 Query: 666 MTADVIQATYEHCLKCEMDGYVSKPF----EGEQLYREVTRFFQNHDHVQ*VGLYG 511 + A I +E C + EM ++ P E Y+ V + FQNH+HV VGL G Sbjct: 1411 LDAKSIATLFELCERLEMQLIIAAPENISPEKGTTYKLVRKVFQNHEHVHVVGLRG 1466
>DBP4_NEUCR (Q7RZ35) ATP-dependent RNA helicase dbp-4 (EC 3.6.1.-)| Length = 823 Score = 32.3 bits (72), Expect = 1.3 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = -3 Query: 422 FEKIPGDGATQALFLLGTPSHQEAKKKGVKLLKQGCRCTMRHFVEQLPGDGSREKK 255 F+K+ DG +L L GTP + K + VK LK R M + DG KK Sbjct: 479 FDKLDLDGFASSLGLPGTPQIRYQKGEDVKKLKNASRAAMSSGSDTEGSDGEIRKK 534
>MUKB_KLEPN (Q937H2) Chromosome partition protein mukB (Structural maintenance of| chromosome-related protein) Length = 1479 Score = 31.2 bits (69), Expect = 2.9 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%) Frame = -2 Query: 666 MTADVIQATYEHCLKCEMDGYVSKPF----EGEQLYREVTRFFQNHDHVQ*VGLYG 511 + A I +E C + EM ++ P E Y+ V + F NH+HV VGL G Sbjct: 1408 LDARSIATLFELCERLEMQLIIAAPENISPEKGTTYKLVRKVFNNHEHVHVVGLRG 1463
>FA12_HUMAN (P00748) Coagulation factor XII precursor (EC 3.4.21.38) (Hageman| factor) (HAF) [Contains: Coagulation factor XIIa heavy chain; Beta-factor XIIa part 1; Beta-factor XIIa part 2; Coagulation factor XIIa light chain] Length = 615 Score = 31.2 bits (69), Expect = 2.9 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +3 Query: 63 HSNAQKGNSCTNHQT-PHYVHPCDSPGRRKKGKEKTFSPYILHLHYK 200 HS QKG +C N + PH + P G + KEK F P +L +K Sbjct: 101 HSPCQKGGTCVNMPSGPHCLCPQHLTGNHCQ-KEKCFEPQLLRFFHK 146
>MUKB_PHOLL (Q7N6B7) Chromosome partition protein mukB (Structural maintenance of| chromosome-related protein) Length = 1482 Score = 30.8 bits (68), Expect = 3.8 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Frame = -2 Query: 666 MTADVIQATYEHCLKCEMDGYVSKPF----EGEQLYREVTRFFQNHDHVQ*VGLYG 511 + A I +E C + +M ++ P E Y+ V + F+NH+HV VGL G Sbjct: 1411 LDAKSIATLFELCERLQMQLIIAAPENISPEKGTTYKLVRKVFKNHEHVHVVGLRG 1466
>ITIH2_MOUSE (Q61703) Inter-alpha-trypsin inhibitor heavy chain H2 precursor| (ITI heavy chain H2) (Inter-alpha-inhibitor heavy chain 2) Length = 946 Score = 30.8 bits (68), Expect = 3.8 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +1 Query: 388 AWVAPSPGIFSKLVLLGALQLQQTPPRH 471 +W PSP S ++ +GA L+ TPP H Sbjct: 668 SWANPSPTPMSAMLAVGAKPLESTPPTH 695
>ITIH2_MESAU (P97279) Inter-alpha-trypsin inhibitor heavy chain H2 precursor| (ITI heavy chain H2) (Inter-alpha-inhibitor heavy chain 2) (HC2) Length = 946 Score = 30.0 bits (66), Expect = 6.6 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = +1 Query: 388 AWVAPSPGIFSKLVLLGALQLQQTPPRHAM 477 +W +PSP ++ +GA +L+ TPP H + Sbjct: 668 SWASPSPTPVMAMLAVGANRLESTPPPHVI 697
>ETFD_HUMAN (Q16134) Electron transfer flavoprotein-ubiquinone oxidoreductase,| mitochondrial precursor (EC 1.5.5.1) (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF dehydrogenase) (Electron-transferring-flavoprotein dehydrogenase) Length = 617 Score = 30.0 bits (66), Expect = 6.6 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 8/56 (14%) Frame = -2 Query: 471 MARRSLLKLQCSQEYEL*KN-----TWRWSHPGSV---SSWYTIPPRGKEKRCEAL 328 +A+ S L QC ++ KN RWS +V ++ YTI PR K+KR E + Sbjct: 5 LAKLSCLAYQCFHALKIKKNYLPLCAIRWSSTSTVPRITTHYTIYPRDKDKRWEGV 60
>KCAB1_MUSPU (Q28528) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 408 Score = 29.6 bits (65), Expect = 8.6 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +2 Query: 50 AQKNTFKCTKGKFLHKPPNTSLCTPMRFPGKKEKRKGKNFLSLH 181 + ++ KC + + KPP + C P R G E++ + FL +H Sbjct: 21 SSESALKCRRHLAVTKPPPQAACWPARPSGAAERKFLEKFLRVH 64
>ITIH2_HUMAN (P19823) Inter-alpha-trypsin inhibitor heavy chain H2 precursor| (ITI heavy chain H2) (Inter-alpha-inhibitor heavy chain 2) (Inter-alpha-trypsin inhibitor complex component II) (Serum-derived hyaluronan-associated protein) (SHAP) Length = 946 Score = 29.6 bits (65), Expect = 8.6 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +1 Query: 370 VPRRNRAWVAPSPGIFSKLVLLGALQLQQTPPRHAM 477 VP +W PSP ++ G+ L+ TPP H M Sbjct: 662 VPDSTPSWANPSPTPVISMLAQGSQVLESTPPPHVM 697 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 110,573,529 Number of Sequences: 219361 Number of extensions: 2492230 Number of successful extensions: 6644 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 6324 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6641 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
