Clone Information

BLAST Search Result

Clone Name	rbasd20m13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AB102956.1\| Zea mays ZmHK2 mRNA for histidine kinase 2, comp...	165	2e-37
2	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	153	9e-34
3	dbj\|AP006167.3\| Oryza sativa (japonica cultivar-group) genomic D...	153	9e-34
4	dbj\|AP004672.3\| Oryza sativa (japonica cultivar-group) genomic D...	153	9e-34
5	dbj\|AK067580.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	153	9e-34
6	dbj\|AK067355.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	153	9e-34
7	dbj\|AK121135.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	145	2e-31
8	ref\|XM_463649.1\| Oryza sativa (japonica cultivar-group), predic...	133	8e-28
9	gb\|AY211489.1\| Oryza sativa (indica cultivar-group) histidine ki...	133	8e-28
10	gb\|AY211488.1\| Oryza sativa (indica cultivar-group) histidine ki...	133	8e-28
11	gb\|DQ248962.1\| Oryza sativa (indica cultivar-group) hybrid type ...	133	8e-28
12	gb\|AC141922.19\| Medicago truncatula clone mth2-9n11, complete se...	50	0.010
13	gb\|AC144931.29\| Medicago truncatula clone mth2-22b18, complete s...	50	0.010
14	gb\|AC170800.5\| Medicago truncatula clone mth2-32n7, complete seq...	50	0.010
15	gb\|AC142094.12\| Medicago truncatula clone mth2-34h6, complete se...	50	0.010
16	emb\|BX294660.18\| Zebrafish DNA sequence from clone CH211-234D4 i...	44	0.59
17	emb\|BX539336.7\| Zebrafish DNA sequence from clone CH211-128H21 i...	44	0.59
18	dbj\|AB042270.1\| Zea mays ZmHK1 mRNA for histidine kinase 1, comp...	44	0.59
19	emb\|CR376826.12\| Zebrafish DNA sequence from clone DKEYP-78F1 in...	44	0.59
20	emb\|BX649503.3\| Zebrafish DNA sequence from clone DKEYP-90A8 in ...	44	0.59
21	gb\|AY108856.1\| Zea mays PCO066747 mRNA sequence	44	0.59
22	ref\|NM_122966.2\| Arabidopsis thaliana AHK2 (ARABIDOPSIS HISTIDIN...	42	2.3
23	ref\|XM_881327.1\| PREDICTED: Bos taurus similar to HP1-BP74, tran...	42	2.3
24	ref\|XM_868129.1\| PREDICTED: Bos taurus similar to HP1-BP74, tran...	42	2.3
25	emb\|CR932998.12\| Zebrafish DNA sequence from clone DKEY-111I23 i...	42	2.3
26	gb\|BT008407.1\| Arabidopsis thaliana At5g35750 gene, complete cds	42	2.3
27	gb\|BT002530.1\| Arabidopsis thaliana histidine kinase-like protei...	42	2.3
28	dbj\|AK175733.1\| Arabidopsis thaliana mRNA for histidine kinase (...	42	2.3
29	dbj\|AB121445.1\| Zea mays ZmHK3b mRNA for histidine kinase 3, com...	42	2.3
30	dbj\|AB102957.1\| Zea mays ZmHK3a mRNA for histidine kinase 3, com...	42	2.3
31	dbj\|AB011485.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	42	2.3
32	dbj\|AB046869.1\| Arabidopsis thaliana AHK2 mRNA for histidine kin...	42	2.3
33	emb\|AL590079.3\|CNS07EG6 Human chromosome 14 DNA sequence Partial...	42	2.3
34	gb\|AC121870.2\| Mus musculus chromosome 9 clone RP24-121D5, compl...	40	9.2
35	gb\|AE017345.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	9.2
36	gb\|AC122487.3\| Mus musculus BAC clone RP24-381E21 from chromosom...	40	9.2
37	gb\|AC140841.2\| Mus musculus BAC clone RP24-470M20 from chromosom...	40	9.2
38	gb\|AC127382.4\| Homo sapiens BAC clone RP11-1380M11 from UL, comp...	40	9.2
39	gb\|AC119415.13\| Medicago truncatula clone mth2-27n2, complete se...	40	9.2
40	emb\|AL358781.19\| Human DNA sequence from clone RP11-334J6 on chr...	40	9.2
41	gb\|AC131631.5\| Rattus norvegicus 2 BAC CH230-16C23 (Children's H...	40	9.2
42	emb\|AL596025.22\| Mouse DNA sequence from clone RP23-215H18 on ch...	40	9.2
43	emb\|BX323864.8\| Zebrafish DNA sequence from clone CH211-218K4 in...	40	9.2
44	emb\|AL845302.4\| Zebrafish DNA sequence from clone CH211-108C6 in...	40	9.2
45	gb\|CP000077.1\| Sulfolobus acidocaldarius DSM 639, complete genome	40	9.2
46	emb\|BX511254.6\| Zebrafish DNA sequence from clone DKEYP-90G2 in ...	40	9.2
47	emb\|BX005425.12\| Zebrafish DNA sequence from clone DKEY-7O6 in l...	40	9.2
48	gb\|CP000267.1\| Rhodoferax ferrireducens DSM 15236, complete genome	40	9.2
49	gb\|AC064807.7\| Homo sapiens chromosome 8, clone RP11-546K22, com...	40	9.2
50	gb\|AC067932.9\| Homo sapiens chromosome 8, clone RP11-78F5, compl...	40	9.2
51	emb\|BX323874.4\| Zebrafish DNA sequence from clone DKEY-104N21 in...	40	9.2
52	gb\|AC018501.9\| Homo sapiens chromosome 3 clone RP11-283K15 map 3...	40	9.2
53	emb\|BX571853.4\| Zebrafish DNA sequence from clone DKEY-29H14 in ...	40	9.2
54	gb\|AC136375.2\| Homo sapiens BAC clone RP11-104P1 from 2, complet...	40	9.2
55	gb\|AC000362.1\|HSAC000362 Human cosmid g1346a094, complete sequence	40	9.2
56	emb\|AL929229.6\| Zebrafish DNA sequence from clone CH211-1E14 in ...	40	9.2
57	emb\|CT010459.8\| M.truncatula DNA sequence from clone MTH2-35J4 o...	40	9.2
58	gb\|AC005245.1\|AC005245 Homo sapiens chromosome 17, clone hRPK.64...	40	9.2
59	gb\|AC130831.4\| Mus musculus BAC clone RP24-80P9 from 14, complet...	40	9.2
60	gb\|AC140198.4\| Mus musculus BAC clone RP23-255C4 from 16, comple...	40	9.2
61	emb\|AL929017.9\| Zebrafish DNA sequence from clone DKEY-4C15 in l...	40	9.2
62	gb\|AC090955.3\| Homo sapiens chromosome 3 clone RP11-622A14 map 3...	40	9.2
63	emb\|AL671759.10\| Mouse DNA sequence from clone RP23-151A15 on ch...	40	9.2

>dbj|AB102956.1| Zea mays ZmHK2 mRNA for histidine kinase 2, complete cds
          Length = 3609

 Score =  165 bits (83), Expect = 2e-37
 Identities = 143/163 (87%)
 Strand = Plus / Minus

                                                                        
Query: 504  tttacactccatatagacctacctactgaacatggtcatgattttggaaaaatcgagtta 563
            |||||||||||||||  |||||||||||||| ||||| |||||| ||||||| |||| ||
Sbjct: 3074 tttacactccatataagcctacctactgaacttggtcttgatttaggaaaaagcgagcta 3015

                                                                        
Query: 564  cttctctgtacaactgctccccttcaaatggcttggagacatagccatccatttcacatt 623
            ||||||||||||| ||||| || || ||||||||||| ||||| |||||||||||| |||
Sbjct: 3014 cttctctgtacaattgctcgccctcgaatggcttggaaacataaccatccatttcagatt 2955

                                                       
Query: 624  tcaaacagtgctcatatgttgcctggataacgtctgctgtcat 666
            |||| || || |||| ||| ||||||||||| |||||||||||
Sbjct: 2954 tcaagcattgttcatgtgtcgcctggataacatctgctgtcat 2912

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  153 bits (77), Expect = 9e-34
 Identities = 143/165 (86%)
 Strand = Plus / Plus

                                                                            
Query: 502      aatttacactccatatagacctacctactgaacatggtcatgattttggaaaaatcgagt 561
                |||||||| |||||||| |||| |||| | ||| |||||||||||||||||||| || | 
Sbjct: 40397252 aatttacattccatataaaccttcctattcaacttggtcatgattttggaaaaaccgcgc 40397311

                                                                            
Query: 562      tacttctctgtacaactgctccccttcaaatggcttggagacatagccatccatttcaca 621
                |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 40397312 tacttcgctgtacagctgctccccttcaaatggcttggagacatagccatccatttcgct 40397371

                                                             
Query: 622      tttcaaacagtgctcatatgttgcctggataacgtctgctgtcat 666
                |||||  || | ||| | ||||||||| ||||| ||||| |||||
Sbjct: 40397372 tttcaggcactcctcgtgtgttgcctgtataacatctgccgtcat 40397416

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>dbj|AP006167.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1455F06
          Length = 140848

 Score =  153 bits (77), Expect = 9e-34
 Identities = 143/165 (86%)
 Strand = Plus / Plus

                                                                          
Query: 502    aatttacactccatatagacctacctactgaacatggtcatgattttggaaaaatcgagt 561
              |||||||| |||||||| |||| |||| | ||| |||||||||||||||||||| || | 
Sbjct: 106216 aatttacattccatataaaccttcctattcaacttggtcatgattttggaaaaaccgcgc 106275

                                                                          
Query: 562    tacttctctgtacaactgctccccttcaaatggcttggagacatagccatccatttcaca 621
              |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 106276 tacttcgctgtacagctgctccccttcaaatggcttggagacatagccatccatttcgct 106335

                                                           
Query: 622    tttcaaacagtgctcatatgttgcctggataacgtctgctgtcat 666
              |||||  || | ||| | ||||||||| ||||| ||||| |||||
Sbjct: 106336 tttcaggcactcctcgtgtgttgcctgtataacatctgccgtcat 106380

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>dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0592G05
          Length = 146220

 Score =  153 bits (77), Expect = 9e-34
 Identities = 143/165 (86%)
 Strand = Plus / Plus

                                                                         
Query: 502   aatttacactccatatagacctacctactgaacatggtcatgattttggaaaaatcgagt 561
             |||||||| |||||||| |||| |||| | ||| |||||||||||||||||||| || | 
Sbjct: 48493 aatttacattccatataaaccttcctattcaacttggtcatgattttggaaaaaccgcgc 48552

                                                                         
Query: 562   tacttctctgtacaactgctccccttcaaatggcttggagacatagccatccatttcaca 621
             |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 48553 tacttcgctgtacagctgctccccttcaaatggcttggagacatagccatccatttcgct 48612

                                                          
Query: 622   tttcaaacagtgctcatatgttgcctggataacgtctgctgtcat 666
             |||||  || | ||| | ||||||||| ||||| ||||| |||||
Sbjct: 48613 tttcaggcactcctcgtgtgttgcctgtataacatctgccgtcat 48657

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>dbj|AK067580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112K17, full
            insert sequence
          Length = 2629

 Score =  153 bits (77), Expect = 9e-34
 Identities = 143/165 (86%)
 Strand = Plus / Minus

                                                                        
Query: 502  aatttacactccatatagacctacctactgaacatggtcatgattttggaaaaatcgagt 561
            |||||||| |||||||| |||| |||| | ||| |||||||||||||||||||| || | 
Sbjct: 2083 aatttacattccatataaaccttcctattcaacttggtcatgattttggaaaaaccgcgc 2024

                                                                        
Query: 562  tacttctctgtacaactgctccccttcaaatggcttggagacatagccatccatttcaca 621
            |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 2023 tacttcgctgtacagctgctccccttcaaatggcttggagacatagccatccatttcgct 1964

                                                         
Query: 622  tttcaaacagtgctcatatgttgcctggataacgtctgctgtcat 666
            |||||  || | ||| | ||||||||| ||||| ||||| |||||
Sbjct: 1963 tttcaggcactcctcgtgtgttgcctgtataacatctgccgtcat 1919

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>dbj|AK067355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L13, full
            insert sequence
          Length = 1829

 Score =  153 bits (77), Expect = 9e-34
 Identities = 143/165 (86%)
 Strand = Plus / Minus

                                                                        
Query: 502  aatttacactccatatagacctacctactgaacatggtcatgattttggaaaaatcgagt 561
            |||||||| |||||||| |||| |||| | ||| |||||||||||||||||||| || | 
Sbjct: 1339 aatttacattccatataaaccttcctattcaacttggtcatgattttggaaaaaccgcgc 1280

                                                                        
Query: 562  tacttctctgtacaactgctccccttcaaatggcttggagacatagccatccatttcaca 621
            |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 1279 tacttcgctgtacagctgctccccttcaaatggcttggagacatagccatccatttcgct 1220

                                                         
Query: 622  tttcaaacagtgctcatatgttgcctggataacgtctgctgtcat 666
            |||||  || | ||| | ||||||||| ||||| ||||| |||||
Sbjct: 1219 tttcaggcactcctcgtgtgttgcctgtataacatctgccgtcat 1175

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>dbj|AK121135.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077D19, full
            insert sequence
          Length = 4044

 Score =  145 bits (73), Expect = 2e-31
 Identities = 106/117 (90%)
 Strand = Plus / Minus

                                                                        
Query: 502  aatttacactccatatagacctacctactgaacatggtcatgattttggaaaaatcgagt 561
            |||||||| |||||||| |||| |||| | ||| |||||||||||||||||||| || | 
Sbjct: 3500 aatttacattccatataaaccttcctattcaacttggtcatgattttggaaaaaccgcgc 3441

                                                                     
Query: 562  tacttctctgtacaactgctccccttcaaatggcttggagacatagccatccatttc 618
            |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3440 tacttcgctgtacagctgctccccttcaaatggcttggagacatagccatccatttc 3384

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>ref|XM_463649.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3072

 Score =  133 bits (67), Expect = 8e-28
 Identities = 115/131 (87%)
 Strand = Plus / Minus

                                                                        
Query: 536  tggtcatgattttggaaaaatcgagttacttctctgtacaactgctccccttcaaatggc 595
            |||||||||||||||||||| || | |||||| ||||||| |||||||||||||||||||
Sbjct: 3062 tggtcatgattttggaaaaaccgcgctacttcgctgtacagctgctccccttcaaatggc 3003

                                                                        
Query: 596  ttggagacatagccatccatttcacatttcaaacagtgctcatatgttgcctggataacg 655
            ||||||||||||||||||||||| | |||||  || | ||| | ||||||||| ||||| 
Sbjct: 3002 ttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgtataaca 2943

                       
Query: 656  tctgctgtcat 666
            ||||| |||||
Sbjct: 2942 tctgccgtcat 2932

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>gb|AY211489.1| Oryza sativa (indica cultivar-group) histidine kinase (HK1) gene,
           partial cds
          Length = 1794

 Score =  133 bits (67), Expect = 8e-28
 Identities = 115/131 (87%)
 Strand = Plus / Plus

                                                                       
Query: 536 tggtcatgattttggaaaaatcgagttacttctctgtacaactgctccccttcaaatggc 595
           |||||||||||||||||||| || | |||||| ||||||| |||||||||||||||||||
Sbjct: 11  tggtcatgattttggaaaaaccgcgctacttcgctgtacagctgctccccttcaaatggc 70

                                                                       
Query: 596 ttggagacatagccatccatttcacatttcaaacagtgctcatatgttgcctggataacg 655
           ||||||||||||||||||||||| | |||||  || | ||| | ||||||||| ||||| 
Sbjct: 71  ttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgtataaca 130

                      
Query: 656 tctgctgtcat 666
           ||||| |||||
Sbjct: 131 tctgccgtcat 141

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>gb|AY211488.1| Oryza sativa (indica cultivar-group) histidine kinase (HK1) mRNA,
            partial cds
          Length = 1467

 Score =  133 bits (67), Expect = 8e-28
 Identities = 115/131 (87%)
 Strand = Plus / Minus

                                                                        
Query: 536  tggtcatgattttggaaaaatcgagttacttctctgtacaactgctccccttcaaatggc 595
            |||||||||||||||||||| || | |||||| ||||||| |||||||||||||||||||
Sbjct: 1457 tggtcatgattttggaaaaaccgcgctacttcgctgtacagctgctccccttcaaatggc 1398

                                                                        
Query: 596  ttggagacatagccatccatttcacatttcaaacagtgctcatatgttgcctggataacg 655
            ||||||||||||||||||||||| | |||||  || | ||| | ||||||||| ||||| 
Sbjct: 1397 ttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgtataaca 1338

                       
Query: 656  tctgctgtcat 666
            ||||| |||||
Sbjct: 1337 tctgccgtcat 1327

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>gb|DQ248962.1| Oryza sativa (indica cultivar-group) hybrid type histidine kinase
            mRNA, complete cds
          Length = 3072

 Score =  133 bits (67), Expect = 8e-28
 Identities = 115/131 (87%)
 Strand = Plus / Minus

                                                                        
Query: 536  tggtcatgattttggaaaaatcgagttacttctctgtacaactgctccccttcaaatggc 595
            |||||||||||||||||||| || | |||||| ||||||| |||||||||||||||||||
Sbjct: 3062 tggtcatgattttggaaaaaccgcgctacttcgctgtacagctgctccccttcaaatggc 3003

                                                                        
Query: 596  ttggagacatagccatccatttcacatttcaaacagtgctcatatgttgcctggataacg 655
            ||||||||||||||||||||||| | |||||  || | ||| | ||||||||| ||||| 
Sbjct: 3002 ttggagacatagccatccatttcgcttttcaggcactcctcgtgtgttgcctgtataaca 2943

                       
Query: 656  tctgctgtcat 666
            ||||| |||||
Sbjct: 2942 tctgccgtcat 2932

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>gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete sequence
          Length = 107448

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                         
Query: 602   acatagccatccatttcacatttcaaacagtgctcatatgttgcctggataacgtctgct 661
             ||||| ||||||||  ||||||||||||| |  |||||||| || ||||| || ||||||
Sbjct: 54147 acataaccatccatcccacatttcaaacactcttcatatgtagcatggattacatctgct 54088

                  
Query: 662   gtcat 666
             |||||
Sbjct: 54087 gtcat 54083

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>gb|AC144931.29| Medicago truncatula clone mth2-22b18, complete sequence
          Length = 122819

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                         
Query: 602   acatagccatccatttcacatttcaaacagtgctcatatgttgcctggataacgtctgct 661
             ||||| ||||||||  ||||||||||||| |  |||||||| || ||||| || ||||||
Sbjct: 25682 acataaccatccatcccacatttcaaacactcttcatatgtagcatggattacatctgct 25623

                  
Query: 662   gtcat 666
             |||||
Sbjct: 25622 gtcat 25618

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>gb|AC170800.5| Medicago truncatula clone mth2-32n7, complete sequence
          Length = 99712

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                         
Query: 602   acatagccatccatttcacatttcaaacagtgctcatatgttgcctggataacgtctgct 661
             ||||| ||||||||  ||||||||||||| |  |||||||| || ||||| || ||||||
Sbjct: 43665 acataaccatccatcccacatttcaaacactcttcatatgtagcatggattacatctgct 43606

                  
Query: 662   gtcat 666
             |||||
Sbjct: 43605 gtcat 43601

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>gb|AC142094.12| Medicago truncatula clone mth2-34h6, complete sequence
          Length = 151594

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                          
Query: 602    acatagccatccatttcacatttcaaacagtgctcatatgttgcctggataacgtctgct 661
              ||||| ||||||||  ||||||||||||| |  |||||||| || ||||| || ||||||
Sbjct: 125913 acataaccatccatcccacatttcaaacactcttcatatgtagcatggattacatctgct 125972

                   
Query: 662    gtcat 666
              |||||
Sbjct: 125973 gtcat 125977

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>emb|BX294660.18| Zebrafish DNA sequence from clone CH211-234D4 in linkage group 23,
             complete sequence
          Length = 200676

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 177   tacattttacatttacattaca 198
             ||||||||||||||||||||||
Sbjct: 77807 tacattttacatttacattaca 77786

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>emb|BX539336.7| Zebrafish DNA sequence from clone CH211-128H21 in linkage group 23,
             complete sequence
          Length = 183357

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 177   tacattttacatttacattaca 198
             ||||||||||||||||||||||
Sbjct: 72738 tacattttacatttacattaca 72759

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>dbj|AB042270.1| Zea mays ZmHK1 mRNA for histidine kinase 1, complete cds
          Length = 3041

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 641  gttgcctggataacgtctgctgtcattgcc 670
            |||||||||||||| || ||||||||||||
Sbjct: 2883 gttgcctggataacatcggctgtcattgcc 2854

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>emb|CR376826.12| Zebrafish DNA sequence from clone DKEYP-78F1 in linkage group 20,
             complete sequence
          Length = 153344

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 177   tacattttacatttacattaca 198
             ||||||||||||||||||||||
Sbjct: 33480 tacattttacatttacattaca 33459

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>emb|BX649503.3| Zebrafish DNA sequence from clone DKEYP-90A8 in linkage group 4, complete
              sequence
          Length = 189355

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 177    tacattttacatttacattaca 198
              ||||||||||||||||||||||
Sbjct: 115354 tacattttacatttacattaca 115333

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>gb|AY108856.1| Zea mays PCO066747 mRNA sequence
          Length = 936

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 641 gttgcctggataacgtctgctgtcattgcc 670
           |||||||||||||| || ||||||||||||
Sbjct: 683 gttgcctggataacatcggctgtcattgcc 654

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>ref|NM_122966.2| Arabidopsis thaliana AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) AT5G35750
            (AHK2) mRNA, complete cds
          Length = 3903

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 69/85 (81%)
 Strand = Plus / Minus

                                                                        
Query: 585  cttcaaatggcttggagacatagccatccatttcacatttcaaacagtgctcatatgttg 644
            ||||||| || || || ||||| ||||||||| |||||||||  || |  ||||  || |
Sbjct: 3484 cttcaaacggttttgatacataaccatccattccacatttcatgcattcttcatgagtag 3425

                                     
Query: 645  cctggataacgtctgctgtcattgc 669
            |||| ||||| ||||||||||||||
Sbjct: 3424 cctgaataacatctgctgtcattgc 3400

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>ref|XM_881327.1| PREDICTED: Bos taurus similar to HP1-BP74, transcript variant 4
            (LOC510194), mRNA
          Length = 2314

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 397  gctccatctccaggtattttt 417
            |||||||||||||||||||||
Sbjct: 1473 gctccatctccaggtattttt 1493

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>ref|XM_868129.1| PREDICTED: Bos taurus similar to HP1-BP74, transcript variant 2
            (LOC510194), mRNA
          Length = 3261

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 397  gctccatctccaggtattttt 417
            |||||||||||||||||||||
Sbjct: 2420 gctccatctccaggtattttt 2440

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>emb|CR932998.12| Zebrafish DNA sequence from clone DKEY-111I23 in linkage group 9,
            complete sequence
          Length = 218171

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 180  attttacatttacattacaaa 200
            |||||||||||||||||||||
Sbjct: 2268 attttacatttacattacaaa 2288

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>gb|BT008407.1| Arabidopsis thaliana At5g35750 gene, complete cds
          Length = 1959

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 69/85 (81%)
 Strand = Plus / Minus

                                                                        
Query: 585  cttcaaatggcttggagacatagccatccatttcacatttcaaacagtgctcatatgttg 644
            ||||||| || || || ||||| ||||||||| |||||||||  || |  ||||  || |
Sbjct: 1912 cttcaaacggttttgatacataaccatccattccacatttcatgcattcttcatgagtag 1853

                                     
Query: 645  cctggataacgtctgctgtcattgc 669
            |||| ||||| ||||||||||||||
Sbjct: 1852 cctgaataacatctgctgtcattgc 1828

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>gb|BT002530.1| Arabidopsis thaliana histidine kinase-like protein (At5g35750) mRNA,
            complete cds
          Length = 2347

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 69/85 (81%)
 Strand = Plus / Minus

                                                                        
Query: 585  cttcaaatggcttggagacatagccatccatttcacatttcaaacagtgctcatatgttg 644
            ||||||| || || || ||||| ||||||||| |||||||||  || |  ||||  || |
Sbjct: 1932 cttcaaacggttttgatacataaccatccattccacatttcatgcattcttcatgagtag 1873

                                     
Query: 645  cctggataacgtctgctgtcattgc 669
            |||| ||||| ||||||||||||||
Sbjct: 1872 cctgaataacatctgctgtcattgc 1848

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>dbj|AK175733.1| Arabidopsis thaliana mRNA for histidine kinase (AHK2), complete
           cds, clone: RAFL22-27-P09
          Length = 625

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 69/85 (81%)
 Strand = Plus / Minus

                                                                       
Query: 585 cttcaaatggcttggagacatagccatccatttcacatttcaaacagtgctcatatgttg 644
           ||||||| || || || ||||| ||||||||| |||||||||  || |  ||||  || |
Sbjct: 220 cttcaaacggttttgatacataaccatccattccacatttcatgcattcttcatgagtag 161

                                    
Query: 645 cctggataacgtctgctgtcattgc 669
           |||| ||||| ||||||||||||||
Sbjct: 160 cctgaataacatctgctgtcattgc 136

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>dbj|AB121445.1| Zea mays ZmHK3b mRNA for histidine kinase 3, complete cds
          Length = 4198

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 585  cttcaaatggcttggagacatagccatccatttcaca 621
            ||||||||||||| || ||||| ||||||||| ||||
Sbjct: 3491 cttcaaatggctttgacacatatccatccattccaca 3455

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>dbj|AB102957.1| Zea mays ZmHK3a mRNA for histidine kinase 3, complete cds
          Length = 4598

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 585  cttcaaatggcttggagacatagccatccatttcaca 621
            ||||||||||||| || ||||| ||||||||| ||||
Sbjct: 3550 cttcaaatggctttgacacatatccatccattccaca 3514

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>dbj|AB011485.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXH1
          Length = 87210

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 69/85 (81%)
 Strand = Plus / Plus

                                                                         
Query: 585   cttcaaatggcttggagacatagccatccatttcacatttcaaacagtgctcatatgttg 644
             ||||||| || || || ||||| ||||||||| |||||||||  || |  ||||  || |
Sbjct: 57693 cttcaaacggttttgatacataaccatccattccacatttcatgcattcttcatgagtag 57752

                                      
Query: 645   cctggataacgtctgctgtcattgc 669
             |||| ||||| ||||||||||||||
Sbjct: 57753 cctgaataacatctgctgtcattgc 57777

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>dbj|AB046869.1| Arabidopsis thaliana AHK2 mRNA for histidine kinase, complete cds
          Length = 3531

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 69/85 (81%)
 Strand = Plus / Minus

                                                                        
Query: 585  cttcaaatggcttggagacatagccatccatttcacatttcaaacagtgctcatatgttg 644
            ||||||| || || || ||||| ||||||||| |||||||||  || |  ||||  || |
Sbjct: 3484 cttcaaacggttttgatacataaccatccattccacatttcatgcattcttcatgagtag 3425

                                     
Query: 645  cctggataacgtctgctgtcattgc 669
            |||| ||||| ||||||||||||||
Sbjct: 3424 cctgaataacatctgctgtcattgc 3400

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>emb|AL590079.3|CNS07EG6 Human chromosome 14 DNA sequence Partial sequence from BAC C-2502D3 of
             library CalTech-D from chromosome 14 of Homo sapiens
             (Human), complete sequence
          Length = 96532

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 82    gaaattcctgcacaaaccacc 102
             |||||||||||||||||||||
Sbjct: 53485 gaaattcctgcacaaaccacc 53465

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>gb|AC121870.2| Mus musculus chromosome 9 clone RP24-121D5, complete sequence
          Length = 191747

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 592   tggcttggagacatagccat 611
             ||||||||||||||||||||
Sbjct: 27732 tggcttggagacatagccat 27713

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>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete
              sequence
          Length = 1507550

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    tacattttacatttacatta 196
              ||||||||||||||||||||
Sbjct: 767074 tacattttacatttacatta 767055

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>gb|AC122487.3| Mus musculus BAC clone RP24-381E21 from chromosome 17, complete sequence
          Length = 149666

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    ttttacatttacattacaaa 200
              ||||||||||||||||||||
Sbjct: 113703 ttttacatttacattacaaa 113684

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>gb|AC140841.2| Mus musculus BAC clone RP24-470M20 from chromosome 9, complete sequence
          Length = 163348

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 592   tggcttggagacatagccat 611
             ||||||||||||||||||||
Sbjct: 41115 tggcttggagacatagccat 41134

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>gb|AC127382.4| Homo sapiens BAC clone RP11-1380M11 from UL, complete sequence
          Length = 179507

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   tacattttacatttacatta 196
             ||||||||||||||||||||
Sbjct: 47414 tacattttacatttacatta 47433

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>gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete sequence
          Length = 139330

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   gtgtaccaagaagaaacaga 387
             ||||||||||||||||||||
Sbjct: 44414 gtgtaccaagaagaaacaga 44395

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>emb|AL358781.19| Human DNA sequence from clone RP11-334J6 on chromosome 9 Contains the
             3' end of the gene for a novel protein (KIAA0515), the
             RNU62 gene for U62 small nucleolar RNA, a novel gene
             identical to the RNU62 gene, the POMT1 gene for
             protein-O-mannosyltransferase 1, a novel gene, the gene
             for uridine-cytidine kinase 1 (UCK1) and three CpG
             islands, complete sequence
          Length = 147492

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 539   tcatgattttggaaaaatcg 558
             ||||||||||||||||||||
Sbjct: 18596 tcatgattttggaaaaatcg 18615

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>gb|AC131631.5| Rattus norvegicus 2 BAC CH230-16C23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 207805

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 537   ggtcatgattttggaaaaat 556
             ||||||||||||||||||||
Sbjct: 37402 ggtcatgattttggaaaaat 37383

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>emb|AL596025.22| Mouse DNA sequence from clone RP23-215H18 on chromosome 11 Contains a
              novel gene and the 3' end of a gene that is a possible
              ortholog of human dynein axonemal heavy polypeptide 9
              (DNAH9), complete sequence
          Length = 190066

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    tacattttacatttacatta 196
              ||||||||||||||||||||
Sbjct: 163928 tacattttacatttacatta 163909

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>emb|BX323864.8| Zebrafish DNA sequence from clone CH211-218K4 in linkage group 17,
            complete sequence
          Length = 154824

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 177  tacattttacatttacatta 196
            ||||||||||||||||||||
Sbjct: 8091 tacattttacatttacatta 8110

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>emb|AL845302.4| Zebrafish DNA sequence from clone CH211-108C6 in linkage group 5
            Contains part of a novel gene similar to human SSH1
            (slingshot 1), a novel gene, part of a novel gene similar
            to human CORO1C (actin binding protein coronin 1C) and a
            CpG island, complete sequence
          Length = 147219

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 169  tctctccctacattttacatttac 192
            |||| |||||||||||||||||||
Sbjct: 3415 tctcgccctacattttacatttac 3438

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>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   ccttttttctttgcctcttg 359
             ||||||||||||||||||||
Sbjct: 24085 ccttttttctttgcctcttg 24104

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>emb|BX511254.6| Zebrafish DNA sequence from clone DKEYP-90G2 in linkage group 17,
            complete sequence
          Length = 185139

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 177  tacattttacatttacatta 196
            ||||||||||||||||||||
Sbjct: 2552 tacattttacatttacatta 2571

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>emb|BX005425.12| Zebrafish DNA sequence from clone DKEY-7O6 in linkage group 8, complete
             sequence
          Length = 252440

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   tacattttacatttacatta 196
             ||||||||||||||||||||
Sbjct: 48599 tacattttacatttacatta 48580

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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 332     gcttcacaccttttttctttgcct 355
               ||||||||||||||||||| ||||
Sbjct: 4394635 gcttcacaccttttttcttggcct 4394658

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>gb|AC064807.7| Homo sapiens chromosome 8, clone RP11-546K22, complete sequence
          Length = 203270

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      aaggcttcagctttgaatgt 22
              ||||||||||||||||||||
Sbjct: 101809 aaggcttcagctttgaatgt 101828

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>gb|AC067932.9| Homo sapiens chromosome 8, clone RP11-78F5, complete sequence
          Length = 163777

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      aaggcttcagctttgaatgt 22
              ||||||||||||||||||||
Sbjct: 101323 aaggcttcagctttgaatgt 101304

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>emb|BX323874.4| Zebrafish DNA sequence from clone DKEY-104N21 in linkage group 16,
              complete sequence
          Length = 256605

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 332    gcttcacaccttttttcttt 351
              ||||||||||||||||||||
Sbjct: 130492 gcttcacaccttttttcttt 130473

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>gb|AC018501.9| Homo sapiens chromosome 3 clone RP11-283K15 map 3p, complete sequence
          Length = 202070

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   tacattttacatttacatta 196
             ||||||||||||||||||||
Sbjct: 41128 tacattttacatttacatta 41147

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>emb|BX571853.4| Zebrafish DNA sequence from clone DKEY-29H14 in linkage group 16,
              complete sequence
          Length = 191052

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 332    gcttcacaccttttttcttt 351
              ||||||||||||||||||||
Sbjct: 135547 gcttcacaccttttttcttt 135528

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>gb|AC136375.2| Homo sapiens BAC clone RP11-104P1 from 2, complete sequence
          Length = 17863

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 179  cattttacatttacattaca 198
            ||||||||||||||||||||
Sbjct: 6394 cattttacatttacattaca 6375

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>gb|AC000362.1|HSAC000362 Human cosmid g1346a094, complete sequence
          Length = 40977

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   tacattttacatttacatta 196
             ||||||||||||||||||||
Sbjct: 14628 tacattttacatttacatta 14609

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>emb|AL929229.6| Zebrafish DNA sequence from clone CH211-1E14 in linkage group 18,
              complete sequence
          Length = 184794

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    ctacattttacatttacatt 195
              ||||||||||||||||||||
Sbjct: 148366 ctacattttacatttacatt 148385

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>emb|CT010459.8| M.truncatula DNA sequence from clone MTH2-35J4 on chromosome 3,
             complete sequence
          Length = 128491

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    cacaaaagggaaattcctgc 92
             ||||||||||||||||||||
Sbjct: 90475 cacaaaagggaaattcctgc 90494

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>gb|AC005245.1|AC005245 Homo sapiens chromosome 17, clone hRPK.642_C_21, complete sequence
          Length = 172084

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   tccatctccaggtatttttt 418
             ||||||||||||||||||||
Sbjct: 25578 tccatctccaggtatttttt 25597



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   tccatctccaggtatttttt 418
             ||||||||||||||||||||
Sbjct: 23934 tccatctccaggtatttttt 23953

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>gb|AC130831.4| Mus musculus BAC clone RP24-80P9 from 14, complete sequence
          Length = 233804

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 384    cagagcctgggtggctccatctcc 407
              |||||||||||||||||| |||||
Sbjct: 104770 cagagcctgggtggctccctctcc 104793

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>gb|AC140198.4| Mus musculus BAC clone RP23-255C4 from 16, complete sequence
          Length = 198007

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 372    accaagaagaaacagagcct 391
              ||||||||||||||||||||
Sbjct: 160236 accaagaagaaacagagcct 160255

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>emb|AL929017.9| Zebrafish DNA sequence from clone DKEY-4C15 in linkage group 20,
             complete sequence
          Length = 208922

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   cattttacatttacattaca 198
             ||||||||||||||||||||
Sbjct: 96020 cattttacatttacattaca 96001

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>gb|AC090955.3| Homo sapiens chromosome 3 clone RP11-622A14 map 3p, complete sequence
          Length = 209168

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    tacattttacatttacatta 196
              ||||||||||||||||||||
Sbjct: 176108 tacattttacatttacatta 176127

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>emb|AL671759.10| Mouse DNA sequence from clone RP23-151A15 on chromosome 4, complete
              sequence
          Length = 141790

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 376    agaagaaacagagcctgggt 395
              ||||||||||||||||||||
Sbjct: 117512 agaagaaacagagcctgggt 117531


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,626,474
Number of Sequences: 3902068
Number of extensions: 6626474
Number of successful extensions: 168603
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 168407
Number of HSP's gapped (non-prelim): 202
length of query: 670
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 647
effective length of database: 17,143,297,704
effective search space: 11091713614488
effective search space used: 11091713614488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result