>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 35/36 (97%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                    
Query: 65       tagccttccactgaaaccaaaa-gagagaacagaag 99
                |||||||||||||||||||||| |||||||||||||
Sbjct: 19537761 tagccttccactgaaaccaaaaggagagaacagaag 19537726

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 35/36 (97%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                    
Query: 65       tagccttccactgaaaccaaaa-gagagaacagaag 99
                |||||||||||||||||||||| |||||||||||||
Sbjct: 19463974 tagccttccactgaaaccaaaaggagagaacagaag 19463939

>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144596

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 35/36 (97%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                 
Query: 65    tagccttccactgaaaccaaaa-gagagaacagaag 99
             |||||||||||||||||||||| |||||||||||||
Sbjct: 69942 tagccttccactgaaaccaaaaggagagaacagaag 69907

>gb|AC090667.9| Homo sapiens 12q BAC RP11-791L7 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 145824

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 69    cttccactgaaaccaaaagagagaa 93
             ||||| |||||||||||||||||||
Sbjct: 14321 cttcctctgaaaccaaaagagagaa 14345

>gb|AC007191.1|AC007191 Homo sapiens chromosome 19, cosmid R34072, complete sequence
          Length = 43390

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 195   agaaaaatcttattctctttttctt 219
             ||||||||||| |||||||||||||
Sbjct: 10800 agaaaaatctttttctctttttctt 10776

>gb|AC169129.2| Mus musculus BAC clone RP23-259N3 from chromosome 7, complete sequence
          Length = 190493

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   tttttcttgccctctatcac 231
             ||||||||||||||||||||
Sbjct: 74768 tttttcttgccctctatcac 74749

>gb|AC140468.2| Mus musculus BAC clone RP24-394C15 from chromosome 3, complete sequence
          Length = 168853

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   gaaggaaagaacttactctc 274
             ||||||||||||||||||||
Sbjct: 33351 gaaggaaagaacttactctc 33332

>gb|AC025219.6| Homo sapiens chromosome 15, clone RP11-276M12, complete sequence
          Length = 144244

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    atgagaaaaatcttattctc 211
              ||||||||||||||||||||
Sbjct: 119423 atgagaaaaatcttattctc 119404

>gb|U97006.1| Caenorhabditis elegans cosmid C13F10, complete sequence
          Length = 22886

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 178  caacgtctaaaattatgagaaaaa 201
            |||| |||||||||||||||||||
Sbjct: 8410 caacttctaaaattatgagaaaaa 8387

>gb|AC161114.4| Mus musculus BAC clone RP24-338A5 from chromosome 12, complete sequence
          Length = 220746

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 398    tgggaagatggataaggtca 417
              ||||||||||||||||||||
Sbjct: 186408 tgggaagatggataaggtca 186427

>emb|AL512329.17| Human DNA sequence from clone RP11-157J24 on chromosome 6 Contains a
             E74-like factor 2 (ets domain transcription factor) (ELF2)
             pseudogene, complete sequence
          Length = 72333

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 199   aaatcttattctctttttcttgcc 222
             ||||||||||||| ||||||||||
Sbjct: 68562 aaatcttattctcattttcttgcc 68585

>emb|AL353685.23| Human DNA sequence from clone RP11-31J20 on chromosome 9 Contains part
             of the ABCA1 gene for ATP-binding cassette sub-family A
             (ABC1) member 1, complete sequence
          Length = 129608

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 392   cattgatgggaagatggata 411
             ||||||||||||||||||||
Sbjct: 74876 cattgatgggaagatggata 74857

>emb|AL118502.38|HSA371L19 Human DNA sequence from clone RP11-371L19 on chromosome 20 Contains the
             C20orf54 gene, the C20orf55 gene, the RPS10L gene for
             ribosomal protein S10-like and five CpG islands, complete
             sequence
          Length = 126259

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 499   gtttgtagctcgaaatcagc 518
             ||||||||||||||||||||
Sbjct: 11569 gtttgtagctcgaaatcagc 11588

>emb|BX571814.10| Zebrafish DNA sequence from clone XX-7A10 in linkage group 25, complete
             sequence
          Length = 87559

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   ctccaacgtcaaatctgaag 258
             ||||||||||||||||||||
Sbjct: 62630 ctccaacgtcaaatctgaag 62649

>gb|AC010182.16| Homo sapiens 12 BAC RP11-185N2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 165139

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    agagaacagaaggatgggaa 107
             ||||||||||||||||||||
Sbjct: 91131 agagaacagaaggatgggaa 91150

>gb|AC151426.32| Medicago truncatula clone mth2-6o22, complete sequence
          Length = 116955

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     tgaaaccaaaagagagaaca 95
              ||||||||||||||||||||
Sbjct: 110458 tgaaaccaaaagagagaaca 110477

>emb|BX664752.20| Zebrafish DNA sequence from clone DKEYP-111E5 in linkage group 6,
              complete sequence
          Length = 156503

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    aaaattatgagaaaaatctt 205
              ||||||||||||||||||||
Sbjct: 124154 aaaattatgagaaaaatctt 124135

>gb|AC103976.6| Homo sapiens chromosome 15, clone RP11-121E15, complete sequence
          Length = 182826

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    atgagaaaaatcttattctc 211
              ||||||||||||||||||||
Sbjct: 108089 atgagaaaaatcttattctc 108108

>dbj|AK045836.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230313L14
            product:unclassifiable, full insert sequence
          Length = 1839

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 398  tgggaagatggataaggtca 417
            ||||||||||||||||||||
Sbjct: 1180 tgggaagatggataaggtca 1199

>gb|AC026725.7| Homo sapiens chromosome 5 clone CTD-2236F14, complete sequence
          Length = 101887

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   actgaaatgcttcaccttta 320
             ||||||||||||||||||||
Sbjct: 18208 actgaaatgcttcaccttta 18189

>gb|AC024061.7|AC024061 Homo sapiens chromosome 15 clone RP11-232J12 map 15q21.3, complete
             sequence
          Length = 157042

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    actgaaaccaaaagagagaacaga 97
             ||||||||||||| ||||||||||
Sbjct: 27624 actgaaaccaaaatagagaacaga 27601

>gb|AF287262.1|AF287262 Homo sapiens ATP-binding cassette 1 sub-family A member 1 (ABCA1) and
              SNAP protein genes, complete cds
          Length = 201144

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 392    cattgatgggaagatggata 411
              ||||||||||||||||||||
Sbjct: 104684 cattgatgggaagatggata 104703

>gb|AC024023.4| Homo sapiens BAC clone RP11-83C7 from 4, complete sequence
          Length = 159875

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 202    tcttattctctttttcttgc 221
              ||||||||||||||||||||
Sbjct: 147659 tcttattctctttttcttgc 147640

>gb|AC157213.2| Mus musculus BAC clone RP23-157N5 from chromosome 12, complete sequence
          Length = 211304

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   tgggaagatggataaggtca 417
             ||||||||||||||||||||
Sbjct: 54395 tgggaagatggataaggtca 54414

>gb|AC079865.14| Homo sapiens 12 BAC RP11-745I6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 163494

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    actgaaaccaaaagagagaa 93
             ||||||||||||||||||||
Sbjct: 12544 actgaaaccaaaagagagaa 12525

>gb|AF275948.1|AF275948 Homo sapiens ABCA1 (ABCA1) gene, complete cds
          Length = 149034

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 392   cattgatgggaagatggata 411
             ||||||||||||||||||||
Sbjct: 71363 cattgatgggaagatggata 71382

>gb|AF257660.1|AF257660 Sus scrofa crocalbin-like protein mRNA, partial cds
          Length = 888

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 395 tgatgggaagatggataagg 414
           ||||||||||||||||||||
Sbjct: 678 tgatgggaagatggataagg 697

>gb|AC099625.11| Mus musculus chromosome 7, clone RP24-360F21, complete sequence
          Length = 166818

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    tttttcttgccctctatcac 231
              ||||||||||||||||||||
Sbjct: 150006 tttttcttgccctctatcac 150025

>emb|AL935295.16| Zebrafish DNA sequence from clone CH211-260C23 in linkage group 18,
            complete sequence
          Length = 92348

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 207  ttctctttttcttgccctctatcactct 234
            |||||||||||||| |||||||| ||||
Sbjct: 9296 ttctctttttcttgtcctctatctctct 9269

>emb|BX088688.6| Zebrafish DNA sequence from clone CH211-278F21 in linkage group 20,
              complete sequence
          Length = 179801

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    atgagaaaaatcttattctc 211
              ||||||||||||||||||||
Sbjct: 155251 atgagaaaaatcttattctc 155232

>emb|BX511198.8| Mouse DNA sequence from clone RP23-390P10 on chromosome 4, complete
             sequence
          Length = 183261

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   ttcattattctgctgaagga 390
             ||||||||||||||||||||
Sbjct: 89822 ttcattattctgctgaagga 89841

>gb|AC124778.4| Mus musculus BAC clone RP23-92N3 from 9, complete sequence
          Length = 138531

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     agagaacagaaggatgggaa 107
              ||||||||||||||||||||
Sbjct: 105770 agagaacagaaggatgggaa 105789

>gb|AC132383.5| Mus musculus BAC clone RP23-434M19 from 10, complete sequence
          Length = 212242

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     aagagagaacagaaggatgg 104
              ||||||||||||||||||||
Sbjct: 163181 aagagagaacagaaggatgg 163162


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,226,553
Number of Sequences: 3902068
Number of extensions: 5226553
Number of successful extensions: 102982
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102830
Number of HSP's gapped (non-prelim): 152
length of query: 541
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 518
effective length of database: 17,143,297,704
effective search space: 8880228210672
effective search space used: 8880228210672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)