ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21b07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106014.1| Zea mays PCO120164 mRNA sequence Length = 391 Score = 107 bits (54), Expect = 3e-20 Identities = 90/102 (88%) Strand = Plus / Plus Query: 221 ttcgtcaccgggccttctcggattcagattttgccggtggtgcaacaagggtcctccaaa 280 ||||||||||||||||||||||||| || || || || | ||||||||||| | ||| | Sbjct: 240 ttcgtcaccgggccttctcggattccgaattcgcgggctgcgcaacaagggtgcgccaga 299 Query: 281 ggtaccgcccgcttgccatgtccaccatcgtccagaatcctg 322 |||| |||||||||||||||||||||||||||||||| |||| Sbjct: 300 ggtaacgcccgcttgccatgtccaccatcgtccagaaccctg 341
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 93.7 bits (47), Expect = 5e-16 Identities = 86/99 (86%) Strand = Plus / Minus Query: 225 tcaccgggccttctcggattcagattttgccggtggtgcaacaagggtcctccaaaggta 284 |||| |||||||||| |||||| |||||| ||||||| |||||| || | ||||||||| Sbjct: 619125 tcactgggccttctcagattcacattttgttggtggtgaaacaagagtgcgccaaaggta 619066 Query: 285 ccgcccgcttgccatgtccaccatcgtccagaatcctgt 323 ||| |||||||||||||||||||||||||||||||| Sbjct: 619065 tttcccacttgccatgtccaccatcgtccagaatcctgt 619027 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Minus Query: 433 aggtccggctcggcgttgaggccccggaggaggaagaagccggcgatggtggcggagagg 492 ||||| || ||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct: 617527 aggtcgggatcggcgttgaggccccggatgaggaagaatccggcgatggtggcggagagg 617468 Query: 493 aa 494 || Sbjct: 617467 aa 617466 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 458 ggaggaggaagaagccggcgatggtggcgg 487 |||||| ||||||| ||||||||||||||| Sbjct: 28096877 ggaggaagaagaagacggcgatggtggcgg 28096906
>dbj|AK073235.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020F07, full insert sequence Length = 922 Score = 93.7 bits (47), Expect = 5e-16 Identities = 86/99 (86%) Strand = Plus / Minus Query: 225 tcaccgggccttctcggattcagattttgccggtggtgcaacaagggtcctccaaaggta 284 |||| |||||||||| |||||| |||||| ||||||| |||||| || | ||||||||| Sbjct: 666 tcactgggccttctcagattcacattttgttggtggtgaaacaagagtgcgccaaaggta 607 Query: 285 ccgcccgcttgccatgtccaccatcgtccagaatcctgt 323 ||| |||||||||||||||||||||||||||||||| Sbjct: 606 tttcccacttgccatgtccaccatcgtccagaatcctgt 568 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Minus Query: 433 aggtccggctcggcgttgaggccccggaggaggaagaagccggcgatggtggcggagagg 492 ||||| || ||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct: 485 aggtcgggatcggcgttgaggccccggatgaggaagaatccggcgatggtggcggagagg 426 Query: 493 aa 494 || Sbjct: 425 aa 424
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 93.7 bits (47), Expect = 5e-16 Identities = 86/99 (86%) Strand = Plus / Minus Query: 225 tcaccgggccttctcggattcagattttgccggtggtgcaacaagggtcctccaaaggta 284 |||| |||||||||| |||||| |||||| ||||||| |||||| || | ||||||||| Sbjct: 619125 tcactgggccttctcagattcacattttgttggtggtgaaacaagagtgcgccaaaggta 619066 Query: 285 ccgcccgcttgccatgtccaccatcgtccagaatcctgt 323 ||| |||||||||||||||||||||||||||||||| Sbjct: 619065 tttcccacttgccatgtccaccatcgtccagaatcctgt 619027 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Minus Query: 433 aggtccggctcggcgttgaggccccggaggaggaagaagccggcgatggtggcggagagg 492 ||||| || ||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct: 617527 aggtcgggatcggcgttgaggccccggatgaggaagaatccggcgatggtggcggagagg 617468 Query: 493 aa 494 || Sbjct: 617467 aa 617466 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 458 ggaggaggaagaagccggcgatggtggcgg 487 |||||| ||||||| ||||||||||||||| Sbjct: 28081755 ggaggaagaagaagacggcgatggtggcgg 28081784
>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 181322 Score = 93.7 bits (47), Expect = 5e-16 Identities = 86/99 (86%) Strand = Plus / Plus Query: 225 tcaccgggccttctcggattcagattttgccggtggtgcaacaagggtcctccaaaggta 284 |||| |||||||||| |||||| |||||| ||||||| |||||| || | ||||||||| Sbjct: 123847 tcactgggccttctcagattcacattttgttggtggtgaaacaagagtgcgccaaaggta 123906 Query: 285 ccgcccgcttgccatgtccaccatcgtccagaatcctgt 323 ||| |||||||||||||||||||||||||||||||| Sbjct: 123907 tttcccacttgccatgtccaccatcgtccagaatcctgt 123945 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Plus Query: 433 aggtccggctcggcgttgaggccccggaggaggaagaagccggcgatggtggcggagagg 492 ||||| || ||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct: 125445 aggtcgggatcggcgttgaggccccggatgaggaagaatccggcgatggtggcggagagg 125504 Query: 493 aa 494 || Sbjct: 125505 aa 125506
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 233 ccttctcggattcagattttgccggtggtgcaacaagggtcctccaaaggtaccgcccgc 292 ||||||| ||||| |||||| |||||||| |||||| || | ||||||||| ||| | Sbjct: 657147 ccttctcagattcgcattttgtcggtggtgaaacaagagtgcgccaaaggtatttcccac 657088 Query: 293 ttgccatgtccaccatcgtccagaatcctgt 323 ||||||||||||||||||||||||||||||| Sbjct: 657087 ttgccatgtccaccatcgtccagaatcctgt 657057 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 433 aggtccggctcggcgttgaggccccggaggaggaagaagccggcgatggtggcggagagg 492 ||||| || ||||||||||||||||||| ||||||||| |||||||| || ||||||||| Sbjct: 655586 aggtcgggatcggcgttgaggccccggatgaggaagaatccggcgatagtagcggagagg 655527 Query: 493 aa 494 || Sbjct: 655526 aa 655525
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 233 ccttctcggattcagattttgccggtggtgcaacaagggtcctccaaaggtaccgcccgc 292 ||||||| ||||| |||||| |||||||| |||||| || | ||||||||| ||| | Sbjct: 657147 ccttctcagattcgcattttgtcggtggtgaaacaagagtgcgccaaaggtatttcccac 657088 Query: 293 ttgccatgtccaccatcgtccagaatcctgt 323 ||||||||||||||||||||||||||||||| Sbjct: 657087 ttgccatgtccaccatcgtccagaatcctgt 657057 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 433 aggtccggctcggcgttgaggccccggaggaggaagaagccggcgatggtggcggagagg 492 ||||| || ||||||||||||||||||| ||||||||| |||||||| || ||||||||| Sbjct: 655586 aggtcgggatcggcgttgaggccccggatgaggaagaatccggcgatagtagcggagagg 655527 Query: 493 aa 494 || Sbjct: 655526 aa 655525
>emb|BX571785.1|CNS09SBO Oryza sativa chromosome 12, . Partial sequence from PAC 1 of BAC OSJNBb0027O09 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 14570 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 233 ccttctcggattcagattttgccggtggtgcaacaagggtcctccaaaggtaccgcccgc 292 ||||||| ||||| |||||| |||||||| |||||| || | ||||||||| ||| | Sbjct: 10293 ccttctcagattcgcattttgtcggtggtgaaacaagagtgcgccaaaggtatttcccac 10234 Query: 293 ttgccatgtccaccatcgtccagaatcctgt 323 ||||||||||||||||||||||||||||||| Sbjct: 10233 ttgccatgtccaccatcgtccagaatcctgt 10203 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 433 aggtccggctcggcgttgaggccccggaggaggaagaagccggcgatggtggcggagagg 492 ||||| || ||||||||||||||||||| ||||||||| |||||||| || ||||||||| Sbjct: 8732 aggtcgggatcggcgttgaggccccggatgaggaagaatccggcgatagtagcggagagg 8673 Query: 493 aa 494 || Sbjct: 8672 aa 8671
>ref|XM_473395.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1152 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 399 ccccgcgacggcggcggctgcgtcgtc 425 |||||||||||||||||| |||||||| Sbjct: 965 ccccgcgacggcggcggcggcgtcgtc 939
>emb|AL607006.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence Length = 141787 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 399 ccccgcgacggcggcggctgcgtcgtc 425 |||||||||||||||||| |||||||| Sbjct: 46115 ccccgcgacggcggcggcggcgtcgtc 46141
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 399 ccccgcgacggcggcggctgcgtcgtc 425 |||||||||||||||||| |||||||| Sbjct: 27310187 ccccgcgacggcggcggcggcgtcgtc 27310213 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 404 cgacggcggcggctgcgtcgtcct 427 ||||||||||||| |||||||||| Sbjct: 6888810 cgacggcggcggcggcgtcgtcct 6888833
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 459 gaggaggaagaagccggcgatggtggcggag 489 |||||||| |||||||||||||| ||||||| Sbjct: 10192911 gaggaggaggaagccggcgatggaggcggag 10192881
>dbj|AP005536.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0055M07 Length = 150901 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 459 gaggaggaagaagccggcgatggtggcggag 489 |||||||| |||||||||||||| ||||||| Sbjct: 65277 gaggaggaggaagccggcgatggaggcggag 65247
>dbj|AP004770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017G06 Length = 150628 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 459 gaggaggaagaagccggcgatggtggcggag 489 |||||||| |||||||||||||| ||||||| Sbjct: 140605 gaggaggaggaagccggcgatggaggcggag 140575
>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence Length = 179668 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 458 ggaggaggaagaagccggcgatggtggcgg 487 |||||| ||||||| ||||||||||||||| Sbjct: 56144 ggaggaagaagaagacggcgatggtggcgg 56173
>dbj|AK103295.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125A18, full insert sequence Length = 1317 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 458 ggaggaggaagaagccggcgatggtggcgg 487 |||||| ||||||| ||||||||||||||| Sbjct: 129 ggaggaagaagaagacggcgatggtggcgg 100
>dbj|AB027424.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-c), complete cds, clone:C12024 Length = 1148 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 458 ggaggaggaagaagccggcgatggtggcgg 487 |||||| ||||||| ||||||||||||||| Sbjct: 81 ggaggaagaagaagacggcgatggtggcgg 52
>emb|BX649321.4| Zebrafish DNA sequence from clone DKEY-242D22 in linkage group 1, complete sequence Length = 89729 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 atacgtaaacaatttggcaca 88 ||||||||||||||||||||| Sbjct: 59422 atacgtaaacaatttggcaca 59442
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 463 aggaagaagccggcgatggtggcgg 487 ||||||||||||||| ||||||||| Sbjct: 509413 aggaagaagccggcggtggtggcgg 509437
>gb|AE004535.1| Pseudomonas aeruginosa PAO1, section 96 of 529 of the complete genome Length = 11431 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 422 cgtcctggaacaggtccggctcggc 446 ||||||||||||||| ||||||||| Sbjct: 8280 cgtcctggaacaggttcggctcggc 8256
>emb|BX088571.5| Zebrafish DNA sequence from clone CH211-208H7 in linkage group 1, complete sequence Length = 214441 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 atacgtaaacaatttggcaca 88 ||||||||||||||||||||| Sbjct: 173143 atacgtaaacaatttggcaca 173123
>gb|AF402962.1| Oryza sativa chromosome 4 clone Y5, genomic sequence Length = 23480 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 443 cggcgttgaggccccggaggagga 466 ||||| |||||||||||||||||| Sbjct: 12772 cggcggtgaggccccggaggagga 12795
>gb|AC121870.2| Mus musculus chromosome 9 clone RP24-121D5, complete sequence Length = 191747 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 cccatgttacaacttacaactgcc 135 ||||||| |||||||||||||||| Sbjct: 88214 cccatgtgacaacttacaactgcc 88237
>ref|XM_474818.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 612 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 404 cgacggcggcggctgcgtcgtcct 427 ||||||||||||| |||||||||| Sbjct: 73 cgacggcggcggcggcgtcgtcct 50
>ref|XM_324156.1| Neurospora crassa OR74A hypothetical protein (NCU04800.1) partial mRNA Length = 3285 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 gaggaggaagaagccggcga 478 |||||||||||||||||||| Sbjct: 2538 gaggaggaagaagccggcga 2519
>ref|XM_955333.1| Neurospora crassa OR74A hypothetical protein (NCU04800.1) partial mRNA Length = 3285 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 gaggaggaagaagccggcga 478 |||||||||||||||||||| Sbjct: 2538 gaggaggaagaagccggcga 2519
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 443 cggcgttgaggccccggaggagga 466 ||||| |||||||||||||||||| Sbjct: 7468668 cggcggtgaggccccggaggagga 7468691
>ref|XM_846295.1| PREDICTED: Canis familiaris similar to cytochrome P450, family 11, subfamily B, polypeptide 1 isoform 1 precursor (LOC609093), mRNA Length = 1689 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 gaggccccggaggaggaaga 469 |||||||||||||||||||| Sbjct: 1177 gaggccccggaggaggaaga 1196
>ref|XM_845533.1| PREDICTED: Canis familiaris similar to cytochrome P450, subfamily XIB polypeptide 2 precursor (LOC608494), partial mRNA Length = 1439 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 gaggccccggaggaggaaga 469 |||||||||||||||||||| Sbjct: 927 gaggccccggaggaggaaga 946
>gb|AC079306.7| Homo sapiens BAC clone CTD-2506A20 from 7, complete sequence Length = 70638 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 catccccattctggcactcc 200 |||||||||||||||||||| Sbjct: 62513 catccccattctggcactcc 62532
>gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0071C04, from chromosome 3, complete sequence Length = 126078 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 443 cggcgttgaggccccggaggagga 466 ||||| |||||||||||||||||| Sbjct: 107223 cggcggtgaggccccggaggagga 107246
>gb|AC127579.4| Mus musculus BAC clone RP23-434O19 from chromosome 14, complete sequence Length = 181361 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 cacaagatgtaaccaaaaca 166 |||||||||||||||||||| Sbjct: 9865 cacaagatgtaaccaaaaca 9846
>emb|CR356243.16| Zebrafish DNA sequence from clone CH211-209O4 in linkage group 6, complete sequence Length = 216472 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 gaggccccggaggaggaaga 469 |||||||||||||||||||| Sbjct: 7898 gaggccccggaggaggaaga 7879
>ref|XM_961986.1| PREDICTED: Tribolium castaneum similar to CG9484-PA (LOC655442), mRNA Length = 8550 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 gaagccggcgatggtggcgg 487 |||||||||||||||||||| Sbjct: 1778 gaagccggcgatggtggcgg 1759
>gb|BC043270.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 6, mRNA (cDNA clone IMAGE:5297025), complete cds Length = 3299 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 catccccattctggcactcc 200 |||||||||||||||||||| Sbjct: 542 catccccattctggcactcc 561
>emb|AL606449.4|OSJN00004 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014F04, complete sequence Length = 173903 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 404 cgacggcggcggctgcgtcgtcct 427 ||||||||||||| |||||||||| Sbjct: 167139 cgacggcggcggcggcgtcgtcct 167162
>emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0005B05, complete sequence Length = 149134 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 404 cgacggcggcggctgcgtcgtcct 427 ||||||||||||| |||||||||| Sbjct: 51681 cgacggcggcggcggcgtcgtcct 51704
>gb|AC008467.7| Homo sapiens chromosome 5 clone CTC-364D2, complete sequence Length = 106729 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 176 caaatcatccccattctggcactccagt 203 |||| ||||||||| ||||||||||||| Sbjct: 75266 caaaccatccccatcctggcactccagt 75239
>dbj|AK091294.1| Homo sapiens cDNA FLJ33975 fis, clone DFNES2002817, moderately similar to Mouse mRNA for RNA polymerase I associated factor (PAF53) Length = 2229 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 catccccattctggcactcc 200 |||||||||||||||||||| Sbjct: 441 catccccattctggcactcc 460
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 atgttacaacttacaactgc 134 |||||||||||||||||||| Sbjct: 16242369 atgttacaacttacaactgc 16242350
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 443 cggcgttgaggccccggaggagga 466 ||||| |||||||||||||||||| Sbjct: 7466503 cggcggtgaggccccggaggagga 7466526
>gb|AC009213.5|AC009213 Drosophila melanogaster, chromosome 3R, region 98D-98D, BAC clone BACR09F18, complete sequence Length = 182525 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 455 cccggaggaggaagaagccggcga 478 |||||||||||||||||| ||||| Sbjct: 41873 cccggaggaggaagaagcaggcga 41850
>gb|AC008028.3|AC008028 Drosophila melanogaster, chromosome 3R, region 98C-98D, BAC clone BACR14L13, complete sequence Length = 197348 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 455 cccggaggaggaagaagccggcga 478 |||||||||||||||||| ||||| Sbjct: 196573 cccggaggaggaagaagcaggcga 196550
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 gaagccggcgatggtggcgg 487 |||||||||||||||||||| Sbjct: 818491 gaagccggcgatggtggcgg 818472
>gb|AC008967.3|AC008967 Homo sapiens chromosome 5 clone CTD-2367A17, complete sequence Length = 88958 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 151 agatgtaaccaaaacagatacaat 174 |||||||| ||||||||||||||| Sbjct: 39750 agatgtaatcaaaacagatacaat 39727
>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1344_B01 Length = 170912 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 atgttacaacttacaactgc 134 |||||||||||||||||||| Sbjct: 58885 atgttacaacttacaactgc 58866
>dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556H01 Length = 149800 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 atgttacaacttacaactgc 134 |||||||||||||||||||| Sbjct: 146970 atgttacaacttacaactgc 146951
>dbj|AK100577.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105H18, full insert sequence Length = 2420 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 atgttacaacttacaactgc 134 |||||||||||||||||||| Sbjct: 2380 atgttacaacttacaactgc 2361
>gb|AC154858.2| Mus musculus BAC clone RP23-12P20 from 14, complete sequence Length = 180592 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 cacaagatgtaaccaaaaca 166 |||||||||||||||||||| Sbjct: 73578 cacaagatgtaaccaaaaca 73597
>emb|AL442110.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0512B01, complete sequence Length = 140069 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 404 cgacggcggcggctgcgtcgtcct 427 ||||||||||||| |||||||||| Sbjct: 80468 cgacggcggcggcggcgtcgtcct 80491
>gb|AE003765.3| Drosophila melanogaster chromosome 3R, section 103 of 118 of the complete sequence Length = 239049 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 455 cccggaggaggaagaagccggcga 478 |||||||||||||||||| ||||| Sbjct: 172252 cccggaggaggaagaagcaggcga 172229
>emb|AL832124.1|HSM803431 Homo sapiens mRNA; cDNA DKFZp686C0910 (from clone DKFZp686C0910) Length = 5249 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 catccccattctggcactcc 200 |||||||||||||||||||| Sbjct: 2431 catccccattctggcactcc 2450 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,828,500 Number of Sequences: 3902068 Number of extensions: 3828500 Number of successful extensions: 104436 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103101 Number of HSP's gapped (non-prelim): 1334 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
