>TRMU_CORGL (Q8NR24) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 365

 Score = 33.5 bits (75), Expect = 0.64
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = -3

Query: 682 LGFLLNGDDRSEECEIWLKAHGAVLSVDNSGELQIDTKASSSMLFMPEPENAVAHGDASL 503
           L FL    D   +CE+ ++AHG V+S   +    ID  A   +L + EP   VA G A++
Sbjct: 288 LKFLHPAMDGQIDCEVQVRAHGGVVSCSAT----IDRDADFMVLNLNEPLQGVARGQAAV 343

>TRMU_COREF (Q8FQ01) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 365

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -3

Query: 700 GMLHRF-LGFLLNGDDRSEECEIWLKAHGAVLSVDNSGELQIDTKASSSMLFMPEPENAV 524
           G++H   L FL    D   +CE+ ++AHG V+        +ID  A +  L + E  + V
Sbjct: 281 GVIHADRLKFLHPAMDGELDCEVQVRAHGGVVKC----HARIDRTADTMRLDLAESLSGV 336

Query: 523 AHGDASL 503
           A G A++
Sbjct: 337 ARGQAAV 343

>MPAA2_AMBAR (P27762) Pollen allergen Amb a 2 precursor (Antigen K) (Antigen Amb|
           a II)
          Length = 397

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -1

Query: 600 ITVENCR*TQR---LLLVCFSCRSQRMRLHMAMRHLQLTTSLHVRRRRCTYG 454
           +T+ NC+ T     +LL       Q +++H+ + +   T ++H R  RC +G
Sbjct: 230 VTISNCKFTHHEKAVLLGASDTHFQDLKMHVTLAYNIFTNTVHERMPRCRFG 281

>UBP2_CHICK (O57429) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 2)
           (Ubiquitin-specific-processing protease 2)
           (Deubiquitinating enzyme 2) (41 kDa ubiquitin-specific
           protease)
          Length = 357

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 12/64 (18%)
 Frame = +3

Query: 378 E*QRILIRAGANACIHMHQHADELHRHTYTFYDVRA------------KKSLTASDASPC 521
           E  R+L+R  ANA    H   DE  R  +  Y  R             K SLT S+   C
Sbjct: 124 EVNRVLVRPRANADTLDHLPDDEKSRQMWRRYQEREDSRVSDLFVGQLKSSLTCSECGYC 183

Query: 522 ATAF 533
           +TAF
Sbjct: 184 STAF 187


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,087,320
Number of Sequences: 219361
Number of extensions: 2475272
Number of successful extensions: 5721
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5717
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7026286028
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)