ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20m01 |
|---|---|
| Clone Library Name | barley_pub |
>YIPF5_RAT (Q5XID0) Protein YIPF5 (YIP1 domain family member 5)| (YPT-interacting protein 1 A) Length = 257 Score = 59.3 bits (142), Expect = 2e-09 Identities = 30/43 (69%), Positives = 30/43 (69%) Frame = -3 Query: 395 IIGWXXXXXXXXXXXALAMDGQQLLVAYPCALLYGVXALIXVF 267 IIGW ALAMDGQQLLVAYPCALLYGV ALI VF Sbjct: 215 IIGWCSFSASKIFISALAMDGQQLLVAYPCALLYGVFALISVF 257
>YIPF5_MOUSE (Q9EQQ2) Protein YIPF5 (YIP1 domain family member 5)| (YPT-interacting protein 1 A) Length = 257 Score = 59.3 bits (142), Expect = 2e-09 Identities = 30/43 (69%), Positives = 30/43 (69%) Frame = -3 Query: 395 IIGWXXXXXXXXXXXALAMDGQQLLVAYPCALLYGVXALIXVF 267 IIGW ALAMDGQQLLVAYPCALLYGV ALI VF Sbjct: 215 IIGWCSFSASKIFISALAMDGQQLLVAYPCALLYGVFALISVF 257
>YIPF5_BRARE (Q6P5I8) Protein YIPF5 (YIP1 domain family member 5)| Length = 257 Score = 59.3 bits (142), Expect = 2e-09 Identities = 30/43 (69%), Positives = 30/43 (69%) Frame = -3 Query: 395 IIGWXXXXXXXXXXXALAMDGQQLLVAYPCALLYGVXALIXVF 267 IIGW ALAMDGQQLLVAYPCALLYGV ALI VF Sbjct: 215 IIGWCSLSASKIFISALAMDGQQLLVAYPCALLYGVFALISVF 257
>YIPF5_XENLA (Q7SXS2) Protein YIPF5 (YIP1 domain family member 5)| Length = 256 Score = 59.3 bits (142), Expect = 2e-09 Identities = 30/43 (69%), Positives = 30/43 (69%) Frame = -3 Query: 395 IIGWXXXXXXXXXXXALAMDGQQLLVAYPCALLYGVXALIXVF 267 IIGW ALAMDGQQLLVAYPCALLYGV ALI VF Sbjct: 214 IIGWCSFSASKIFISALAMDGQQLLVAYPCALLYGVFALISVF 256
>YIPF5_XENTR (Q66KA5) Protein YIPF5 (YIP1 domain family member 5)| Length = 256 Score = 58.2 bits (139), Expect = 5e-09 Identities = 29/43 (67%), Positives = 30/43 (69%) Frame = -3 Query: 395 IIGWXXXXXXXXXXXALAMDGQQLLVAYPCALLYGVXALIXVF 267 IIGW ALAMDGQQ+LVAYPCALLYGV ALI VF Sbjct: 214 IIGWCSFSASKIFISALAMDGQQVLVAYPCALLYGVFALISVF 256
>YIPF5_PONPY (Q5R6W5) Protein YIPF5 (YIP1 domain family member 5)| Length = 257 Score = 57.8 bits (138), Expect = 6e-09 Identities = 29/43 (67%), Positives = 30/43 (69%) Frame = -3 Query: 395 IIGWXXXXXXXXXXXALAMDGQQLLVAYPCALLYGVXALIXVF 267 IIGW ALAM+GQQLLVAYPCALLYGV ALI VF Sbjct: 215 IIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVFALISVF 257
>YIPF5_MACFA (Q4R5M4) Protein YIPF5 (YIP1 domain family member 5)| Length = 257 Score = 57.8 bits (138), Expect = 6e-09 Identities = 29/43 (67%), Positives = 30/43 (69%) Frame = -3 Query: 395 IIGWXXXXXXXXXXXALAMDGQQLLVAYPCALLYGVXALIXVF 267 IIGW ALAM+GQQLLVAYPCALLYGV ALI VF Sbjct: 215 IIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVFALISVF 257
>YIPF5_HUMAN (Q969M3) Protein YIPF5 (YIP1 domain family member 5)| (YPT-interacting protein 1 A) (Five-pass transmembrane protein localizing in the Golgi apparatus and the endoplasmic reticulum 5) (Smooth muscle cell-associated protein 5) (SMAP-5) Length = 257 Score = 57.8 bits (138), Expect = 6e-09 Identities = 29/43 (67%), Positives = 30/43 (69%) Frame = -3 Query: 395 IIGWXXXXXXXXXXXALAMDGQQLLVAYPCALLYGVXALIXVF 267 IIGW ALAM+GQQLLVAYPCALLYGV ALI VF Sbjct: 215 IIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVFALISVF 257
>YIPF5_BOVIN (Q5E9E8) Protein YIPF5 (YIP1 domain family member 5)| Length = 257 Score = 57.8 bits (138), Expect = 6e-09 Identities = 29/43 (67%), Positives = 30/43 (69%) Frame = -3 Query: 395 IIGWXXXXXXXXXXXALAMDGQQLLVAYPCALLYGVXALIXVF 267 IIGW ALAM+GQQLLVAYPCALLYGV ALI VF Sbjct: 215 IIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVFALISVF 257
>YCB4_SCHPO (O94348) Uncharacterized protein C61.04c| Length = 227 Score = 34.3 bits (77), Expect = 0.074 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = -3 Query: 386 WXXXXXXXXXXXALAMDGQQLLVAYPCALLYGVXALIXVF 267 W L ++ + LVAYP AL YGV A+I VF Sbjct: 186 WCTYAASAMFVGILQVNNMRFLVAYPIALFYGVFAVITVF 225
>VGLC_EHV4 (P22596) Glycoprotein C precursor (Glycoprotein 13)| Length = 485 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/44 (25%), Positives = 21/44 (47%) Frame = +2 Query: 5 HHNMHXPSVDATKNITXLPYKPGVXINTEDIESLQYXNGXLDVH 136 H + H ++ T ++ +PY V IN S+ + L++H Sbjct: 82 HPHSHENTITCTNSLISVPYYTSVTINCSTTVSVNHSEYRLEIH 125
>LAX3_ORYSA (Q7XGU4) Auxin transporter-like protein 3| Length = 547 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +3 Query: 3 ITTTCMXLLWTPPKTLHXYLISQVYXLTL 89 +T M +W P K YL++ VY LTL Sbjct: 266 VTVEIMHAMWRPQKFKAIYLLATVYVLTL 294
>LAX3_ARATH (Q9CA25) Auxin transporter-like protein 3 (AUX1-like protein 3)| Length = 470 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = +3 Query: 3 ITTTCMXLLWTPPKTLHXYLISQVYXLTL 89 +T M +W P K YL++ +Y LTL Sbjct: 249 VTVEIMHAMWKPQKFKAIYLLATIYVLTL 277
>LAX2_ORYSA (Q688J2) Auxin transporter-like protein 2| Length = 482 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = +3 Query: 3 ITTTCMXLLWTPPKTLHXYLISQVYXLTL 89 +T M +W P K + YL++ +Y TL Sbjct: 250 VTVEIMHAMWKPQKFKYIYLVATLYVFTL 278 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,960,913 Number of Sequences: 219361 Number of extensions: 720398 Number of successful extensions: 1248 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1228 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1248 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
