ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21a24 |
|---|---|
| Clone Library Name | barley_pub |
>PCSK6_RAT (Q63415) Proprotein convertase subtilisin/kexin type 6 precursor| (EC 3.4.21.-) (Paired basic amino acid cleaving enzyme 4) (Subtilisin/kexin-like protease PACE4) (Subtilisin-like proprotein convertase 4) (SPC4) Length = 937 Score = 32.7 bits (73), Expect = 0.72 Identities = 19/48 (39%), Positives = 22/48 (45%) Frame = -3 Query: 288 PRPWRQGPRGSWRLQRRIRWRGLSQPAACSGNPGPEPVPNPRWEVRLL 145 PRPWR W L L+ PA CS P P PV W V++L Sbjct: 28 PRPWR------WLLL-------LALPAVCSALPPPRPVYTNHWAVQVL 62
>Y157_AQUAE (O66547) Hypothetical protein aq_157 precursor| Length = 162 Score = 32.3 bits (72), Expect = 0.94 Identities = 14/30 (46%), Positives = 24/30 (80%) Frame = -1 Query: 560 LDEFEKVMEEKRKALDALKKSEERKVEIDK 471 L++++K+++EK+K L+ALKKS E K +K Sbjct: 50 LEKYQKLIQEKQKKLEALKKSLESKALSEK 79
>PCSK6_HUMAN (P29122) Proprotein convertase subtilisin/kexin type 6 precursor| (EC 3.4.21.-) (Paired basic amino acid cleaving enzyme 4) (Subtilisin/kexin-like protease PACE4) (Subtilisin-like proprotein convertase 4) (SPC4) Length = 969 Score = 30.8 bits (68), Expect = 2.7 Identities = 20/48 (41%), Positives = 23/48 (47%) Frame = -3 Query: 288 PRPWRQGPRGSWRLQRRIRWRGLSQPAACSGNPGPEPVPNPRWEVRLL 145 PRPWR W L L+ PAACS P P PV W V++L Sbjct: 46 PRPWR------WLLL-------LALPAACSAPP-PRPVYTNHWAVQVL 79
>TCL2_CAEEL (Q9N428) T-cell defective protein 2| Length = 435 Score = 30.8 bits (68), Expect = 2.7 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = -2 Query: 502 SLKRGRSKLIRIFRLCNYFPPRKEMMRFSSNWVLI 398 +LK + K +RI++L + P+KE+ +S W++I Sbjct: 341 ALKEAKEKEMRIWKLAPFETPKKEVPLYSGRWLVI 375
>MYH10_RAT (Q9JLT0) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle| myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin heavy chain, type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B) Length = 1976 Score = 30.0 bits (66), Expect = 4.6 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Frame = -1 Query: 554 EFEKVMEEKRKALDALKKSEERKVEID-KDLQAMQLLSTKKGNDEVFIKL 408 E E +E++RK AL + ++K+EID KDL+A Q+ + K DEV +L Sbjct: 1600 ELEAELEDERKQR-ALAVASKKKMEIDLKDLEA-QIEAANKARDEVIKQL 1647
>MYH10_MOUSE (Q61879) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle| myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin heavy chain, type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B) Length = 1976 Score = 30.0 bits (66), Expect = 4.6 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Frame = -1 Query: 554 EFEKVMEEKRKALDALKKSEERKVEID-KDLQAMQLLSTKKGNDEVFIKL 408 E E +E++RK AL + ++K+EID KDL+A Q+ + K DEV +L Sbjct: 1600 ELEAELEDERKQR-ALAVASKKKMEIDLKDLEA-QIEAANKARDEVIKQL 1647
>MYH10_HUMAN (P35580) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle| myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin heavy chain, type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B) Length = 1976 Score = 30.0 bits (66), Expect = 4.6 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Frame = -1 Query: 554 EFEKVMEEKRKALDALKKSEERKVEID-KDLQAMQLLSTKKGNDEVFIKL 408 E E +E++RK AL + ++K+EID KDL+A Q+ + K DEV +L Sbjct: 1600 ELEAELEDERKQR-ALAVASKKKMEIDLKDLEA-QIEAANKARDEVIKQL 1647
>MYH10_BOVIN (Q27991) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle| myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin heavy chain, type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B) Length = 1976 Score = 30.0 bits (66), Expect = 4.6 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Frame = -1 Query: 554 EFEKVMEEKRKALDALKKSEERKVEID-KDLQAMQLLSTKKGNDEVFIKL 408 E E +E++RK AL + ++K+EID KDL+A Q+ + K DEV +L Sbjct: 1600 ELEAELEDERKQR-ALAVASKKKMEIDLKDLEA-QIEAANKARDEVIKQL 1647
>KCY_PYRHO (O58988) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidine| monophosphate kinase) (CMP kinase) Length = 192 Score = 29.6 bits (65), Expect = 6.1 Identities = 13/41 (31%), Positives = 25/41 (60%) Frame = -1 Query: 551 FEKVMEEKRKALDALKKSEERKVEIDKDLQAMQLLSTKKGN 429 F ++ +EK +L+ +K E EID+++ Q+ + K+GN Sbjct: 40 FRQMAKEKGMSLEEFQKYAELHPEIDREVDRRQIEAAKEGN 80
>HXA3_HETFR (Q9IA21) Homeobox protein Hox-A3| Length = 410 Score = 29.6 bits (65), Expect = 6.1 Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 10/83 (12%) Frame = +2 Query: 92 LNLTESAILIKGWYSRRHSN----------LTSHRGLGTGSGPGLPEQAAGCDNPRHRIR 241 LNLTE I I W+ R LTS G P P A G N H + Sbjct: 205 LNLTERQIKI--WFQNRRMKYKKDQKAKGMLTSSGGQSPCRSPIPPSAAGGYANSMHSLA 262 Query: 242 L*SLHDPRGPCRHGLGHHRTFLL 310 + +DP P H + + Sbjct: 263 TSAPYDPHSPTSFSKPHQNAYAI 285
>GDF6_BOVIN (P55106) Growth/differentiation factor 6 precursor (GDF-6)| (Cartilage-derived morphogenetic protein 2) (CDMP-2) (Fragment) Length = 436 Score = 29.6 bits (65), Expect = 6.1 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = -3 Query: 213 PAACSGNPGPEPVPNPRWEV 154 PAA S PGP P P WEV Sbjct: 168 PAAGSAEPGPAGAPRPGWEV 187
>FLHC_SALTY (O52222) Flagellar transcriptional activator flhC| Length = 192 Score = 29.3 bits (64), Expect = 7.9 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -2 Query: 514 ML*RSLKRGRSKLIRIFRLCNYFPPRKEMMRFSSNWVL 401 ML + R +LIR+++ PP K M+ FS++W + Sbjct: 28 MLESETQLSRGRLIRLYKELRGSPPPKGMLPFSTDWFM 65
>THIK_SALPA (Q5PGS9) Thiamine kinase (EC 2.7.1.89)| Length = 274 Score = 29.3 bits (64), Expect = 7.9 Identities = 25/78 (32%), Positives = 33/78 (42%) Frame = +2 Query: 89 NLNLTESAILIKGWYSRRHSNLTSHRGLGTGSGPGLPEQAAGCDNPRHRIRL*SLHDPRG 268 N LT IL + ++ + +T+ +GL GS + HRI L HDP Sbjct: 6 NNPLTRDEILSR-YFPQYRPAVTASQGLSGGS--------CIIAHDTHRIVLRRHHDPDA 56 Query: 269 PCRHGLGHHRTFLLQQAS 322 P H L HHR AS Sbjct: 57 PPAHFLRHHRALSQLPAS 74
>FLHC_XENNE (Q9X9F3) Flagellar transcriptional activator flhC| Length = 194 Score = 29.3 bits (64), Expect = 7.9 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -2 Query: 514 ML*RSLKRGRSKLIRIFRLCNYFPPRKEMMRFSSNWVL 401 ML + R +LIR+++ PP K M+ FS++W + Sbjct: 28 MLESETQLSRGRLIRLYKELRGSPPPKGMLPFSTDWFM 65 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,244,163 Number of Sequences: 219361 Number of extensions: 1369588 Number of successful extensions: 5072 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4648 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5063 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
