ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20l23 |
|---|---|
| Clone Library Name | barley_pub |
>FSHB_RABIT (Q6IY73) Follitropin beta chain precursor (Follicle-stimulating| hormone beta subunit) (FSH-beta) (FSH-B) Length = 129 Score = 30.8 bits (68), Expect = 2.7 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Frame = -3 Query: 242 LICCWCCLPLPGAELESYFYRVLRRSC--CLSCIAEVCSAVCFGSPLKYR 99 L CCW + EL + V + C C+S CS C+ L Y+ Sbjct: 9 LFCCWKAICCSSCELTNITIAVEKEECRFCISINTTWCSGYCYTRDLVYK 58
>FSHB_PANTA (Q9BDJ0) Follitropin beta chain precursor (Follicle-stimulating| hormone beta subunit) (FSH-beta) (FSH-B) Length = 129 Score = 30.8 bits (68), Expect = 2.7 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = -3 Query: 242 LICCWCCLPLPGAELESYFYRVLRRSC--CLSCIAEVCSAVCFGSPLKYR 99 L CCW + EL + V + C C+S A C+ C+ L Y+ Sbjct: 9 LFCCWRVICCKSCELTNITITVEKEECRFCMSINATWCAGYCYTRDLVYK 58
>ADA33_HUMAN (Q9BZ11) ADAM 33 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 33) Length = 813 Score = 30.8 bits (68), Expect = 2.7 Identities = 17/41 (41%), Positives = 20/41 (48%) Frame = -3 Query: 281 VLSSLLPRQQRTGLICCWCCLPLPGAELESYFYRVLRRSCC 159 +LS LLP GL WCC LPGA L+ + R C Sbjct: 707 LLSVLLPLLPGAGL--AWCCYRLPGAHLQRCSWGCRRDPAC 745
>FSHB_BUBBU (Q6SV86) Follitropin beta chain precursor (Follicle-stimulating| hormone beta subunit) (FSH-beta) (FSH-B) Length = 129 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Frame = -3 Query: 242 LICCWCCLPLPGAELESYFYRVLRRSC--CLSCIAEVCSAVCFGSPLKYR 99 L CCW + EL + V + C C+S C+ C+ L YR Sbjct: 9 LFCCWRAICCRSCELTNITITVEKEECGFCISINTTWCAGYCYTRDLVYR 58
>FSHB_BOVIN (P04837) Follitropin beta chain precursor (Follicle-stimulating| hormone beta subunit) (FSH-beta) (FSH-B) Length = 129 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Frame = -3 Query: 242 LICCWCCLPLPGAELESYFYRVLRRSC--CLSCIAEVCSAVCFGSPLKYR 99 L CCW + EL + V + C C+S C+ C+ L YR Sbjct: 9 LFCCWRAICCRSCELTNITITVEKEECGFCISINTTWCAGYCYTRDLVYR 58
>NEL_CHICK (Q90827) Protein NEL precursor (93 kDa protein)| Length = 816 Score = 30.0 bits (66), Expect = 4.5 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = -3 Query: 245 GLICCWCCLPLPGAELESYFYRVLRRSCCLSCIAEVCSA 129 G + CW PLP E++ F + CC C+ + C A Sbjct: 727 GEVDCW---PLPCPEVDCEFSVLPENECCPRCVTDPCQA 762
>NELL2_HUMAN (Q99435) Protein kinase C-binding protein NELL2 precursor (NEL-like| protein 2) (Nel-related protein 2) Length = 816 Score = 30.0 bits (66), Expect = 4.5 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = -3 Query: 245 GLICCWCCLPLPGAELESYFYRVLRRSCCLSCIAEVCSA 129 G + CW PLP ++E F + CC C+ + C A Sbjct: 727 GEVDCW---PLPCPDVECEFSILPENECCPRCVTDPCQA 762
>FSHB_AILME (Q8WN19) Follitropin beta chain precursor (Follicle-stimulating| hormone beta subunit) (FSH-beta) (FSH-B) Length = 129 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Frame = -3 Query: 242 LICCWCCLPLPGAELESYFYRVLRRSC--CLSCIAEVCSAVCFGSPLKYR 99 L CCW + EL + V + C C+S C+ C+ L Y+ Sbjct: 9 LFCCWRAICCKSCELTNITITVEKEECRFCISINTTWCAGYCYTRDLVYK 58
>FSHB_SHEEP (P01227) Follitropin beta chain precursor (Follicle-stimulating| hormone beta subunit) (FSH-beta) (FSH-B) Length = 129 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Frame = -3 Query: 242 LICCWCCLPLPGAELESYFYRVLRRSC--CLSCIAEVCSAVCFGSPLKYR 99 L CCW + EL + V + C C+S C+ C+ L Y+ Sbjct: 9 LFCCWRAICCRSCELTNITITVEKEECSFCISINTTWCAGYCYTRDLVYK 58
>FSHB_PIG (P01228) Follitropin beta chain precursor (Follicle-stimulating| hormone beta subunit) (FSH-beta) (FSH-B) Length = 129 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Frame = -3 Query: 242 LICCWCCLPLPGAELESYFYRVLRRSC--CLSCIAEVCSAVCFGSPLKYR 99 L CCW + EL + V + C C+S C+ C+ L Y+ Sbjct: 9 LFCCWKAICCNSCELTNITITVEKEECNFCISINTTWCAGYCYTRDLVYK 58
>FSHB_CERNI (Q8HY84) Follitropin beta chain precursor (Follicle-stimulating| hormone beta subunit) (FSH-beta) (FSH-B) Length = 129 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%) Frame = -3 Query: 242 LICCWCCLPLPGAELESYFYRVLRRSC--CLSCIAEVCSAVCFGSPLKYR 99 L CCW EL + V + C C+S C+ C+ L YR Sbjct: 9 LFCCWRATCCRSCELTNITITVEKEECSFCISINTTWCAGYCYTRDLVYR 58
>FSHB_CAPHI (Q8HY83) Follitropin beta chain precursor (Follicle-stimulating| hormone beta subunit) (FSH-beta) (FSH-B) Length = 129 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Frame = -3 Query: 242 LICCWCCLPLPGAELESYFYRVLRRSC--CLSCIAEVCSAVCFGSPLKYR 99 L CCW + EL + V + C C+S C+ C+ L Y+ Sbjct: 9 LFCCWRAICCRSCELTNITITVEKEECSFCISINTTWCAGYCYTRDLVYK 58
>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22| Length = 907 Score = 29.3 bits (64), Expect = 7.8 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Frame = +2 Query: 110 KANQNKLRNKLQLYKTGSRTVAKPYKNNSPTRHQVEVGNTNNKLSRSVVVAAAD*RGHFY 289 KA R+ L +GSR+ + + +SP+R V + + + + + RG Y Sbjct: 810 KAGSVDNRSPLSRSPSGSRSPSPRRRRDSPSRSPVRDRESGGRAAAAAPGNSEARRGRSY 869 Query: 290 IRSKT-IRGANCRPSKRPSPHYSNGMEDPRLHRLHSA 397 RS + R + PS+R S+ PR R S+ Sbjct: 870 SRSPSRTRSPSPAPSRRRRRDSSSDASAPRKRRRESS 906
>CRTI_CERNC (P48537) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene| desaturase) Length = 621 Score = 29.3 bits (64), Expect = 7.8 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = -1 Query: 490 TQKANPSWY*RGSESRQVYAVIKRRSRETDESRMETVKTRILHS 359 T+ A WY G R V A++K RE + RMET +IL S Sbjct: 217 TELAEGIWYPVGGFHRVVEALVKIGEREGVDFRMETAVKKILLS 260
>HIS8_SYNEL (Q8DM42) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 371 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%) Frame = +2 Query: 164 RTVAKPYKNNSPTR---HQVEVGNTNNKLSRSVVVAAA 268 + +A+ SPT HQ+ VGN +++L RS+++A A Sbjct: 70 QAIARYVSEQSPTEISPHQIAVGNGSDELIRSILLATA 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,368,106 Number of Sequences: 219361 Number of extensions: 1585186 Number of successful extensions: 4105 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3972 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4101 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
