ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20l23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475770.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1725 Score = 87.7 bits (44), Expect = 4e-14 Identities = 110/130 (84%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 415 tgcgtctcttgatgacagcatagacttgtcgactttcgctgcctctttagtaccaggatg 474 ||||||||||||||| |||||||||||||| | ||| || ||||||| ||||| ||| Sbjct: 1689 tgcgtctcttgatgatagcatagacttgtcagccttcactccctctttgccaccagcatg 1630 Query: 475 gattggccttttgtgtacgcggcgagtgcgaattctgcttaccattggcaggggaaggga 534 | |||||| |||||||||||||||||||||| ||| ||||||||| || ||| |||| Sbjct: 1629 ggttggcc-tttgtgtacgcggcgagtgcgagttcaacttaccatt---agaggatggga 1574 Query: 535 gggaatggcg 544 |||||||||| Sbjct: 1573 gggaatggcg 1564
>gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1741_B01, complete sequence Length = 147704 Score = 87.7 bits (44), Expect = 4e-14 Identities = 110/130 (84%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 415 tgcgtctcttgatgacagcatagacttgtcgactttcgctgcctctttagtaccaggatg 474 ||||||||||||||| |||||||||||||| | ||| || ||||||| ||||| ||| Sbjct: 57602 tgcgtctcttgatgatagcatagacttgtcagccttcactccctctttgccaccagcatg 57543 Query: 475 gattggccttttgtgtacgcggcgagtgcgaattctgcttaccattggcaggggaaggga 534 | |||||| |||||||||||||||||||||| ||| ||||||||| || ||| |||| Sbjct: 57542 ggttggcc-tttgtgtacgcggcgagtgcgagttcaacttaccatt---agaggatggga 57487 Query: 535 gggaatggcg 544 |||||||||| Sbjct: 57486 gggaatggcg 57477 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 283 tttttacatcagaagcaaaacaat 306 |||||||||| ||||||||||||| Sbjct: 58464 tttttacatcggaagcaaaacaat 58441
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 87.7 bits (44), Expect = 4e-14 Identities = 110/130 (84%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 415 tgcgtctcttgatgacagcatagacttgtcgactttcgctgcctctttagtaccaggatg 474 ||||||||||||||| |||||||||||||| | ||| || ||||||| ||||| ||| Sbjct: 26412911 tgcgtctcttgatgatagcatagacttgtcagccttcactccctctttgccaccagcatg 26412852 Query: 475 gattggccttttgtgtacgcggcgagtgcgaattctgcttaccattggcaggggaaggga 534 | |||||| |||||||||||||||||||||| ||| ||||||||| || ||| |||| Sbjct: 26412851 ggttggcc-tttgtgtacgcggcgagtgcgagttcaacttaccatt---agaggatggga 26412796 Query: 535 gggaatggcg 544 |||||||||| Sbjct: 26412795 gggaatggcg 26412786 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 283 tttttacatcagaagcaaaacaat 306 |||||||||| ||||||||||||| Sbjct: 26413773 tttttacatcggaagcaaaacaat 26413750
>dbj|AK101555.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050A17, full insert sequence Length = 2348 Score = 87.7 bits (44), Expect = 4e-14 Identities = 110/130 (84%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 415 tgcgtctcttgatgacagcatagacttgtcgactttcgctgcctctttagtaccaggatg 474 ||||||||||||||| |||||||||||||| | ||| || ||||||| ||||| ||| Sbjct: 1906 tgcgtctcttgatgatagcatagacttgtcagccttcactccctctttgccaccagcatg 1847 Query: 475 gattggccttttgtgtacgcggcgagtgcgaattctgcttaccattggcaggggaaggga 534 | |||||| |||||||||||||||||||||| ||| ||||||||| || ||| |||| Sbjct: 1846 ggttggcc-tttgtgtacgcggcgagtgcgagttcaacttaccatt---agaggatggga 1791 Query: 535 gggaatggcg 544 |||||||||| Sbjct: 1790 gggaatggcg 1781 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 283 tttttacatcagaagcaaaacaat 306 |||||||||| ||||||||||||| Sbjct: 2056 tttttacatcggaagcaaaacaat 2033
>dbj|AK101539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048G06, full insert sequence Length = 2259 Score = 87.7 bits (44), Expect = 4e-14 Identities = 110/130 (84%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 415 tgcgtctcttgatgacagcatagacttgtcgactttcgctgcctctttagtaccaggatg 474 ||||||||||||||| |||||||||||||| | ||| || ||||||| ||||| ||| Sbjct: 1863 tgcgtctcttgatgatagcatagacttgtcagccttcactccctctttgccaccagcatg 1804 Query: 475 gattggccttttgtgtacgcggcgagtgcgaattctgcttaccattggcaggggaaggga 534 | |||||| |||||||||||||||||||||| ||| ||||||||| || ||| |||| Sbjct: 1803 ggttggcc-tttgtgtacgcggcgagtgcgagttcaacttaccatt---agaggatggga 1748 Query: 535 gggaatggcg 544 |||||||||| Sbjct: 1747 gggaatggcg 1738 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 283 tttttacatcagaagcaaaacaat 306 |||||||||| ||||||||||||| Sbjct: 2013 tttttacatcggaagcaaaacaat 1990
>gb|AY110461.1| Zea mays CL187_5 mRNA sequence Length = 1071 Score = 63.9 bits (32), Expect = 5e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 383 cgtctccattcggctttcatcggtctctcggctgcgtctcttgatgacagcatagacttg 442 |||||||| || ||||||| ||||||||| ||| ||||||||||||||||||| |||| Sbjct: 477 cgtctccactcagctttcagtggtctctcgcttgcatctcttgatgacagcatagccttg 418 Query: 443 tcgactttcgct 454 || |||||||| Sbjct: 417 tcacctttcgct 406
>gb|BT016747.1| Zea mays clone Contig580 mRNA sequence Length = 1705 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 383 cgtctccattcggctttcatcggtctctcggctgcgtctcttgatgacagcatagacttg 442 |||||||| || ||||||| |||||||||| || ||||||||||||||||||| |||| Sbjct: 1293 cgtctccactcagctttcagcggtctctcgctcgcatctcttgatgacagcatagccttg 1234 Query: 443 tcg 445 ||| Sbjct: 1233 tcg 1231 Score = 44.1 bits (22), Expect = 0.48 Identities = 36/40 (90%), Gaps = 3/40 (7%) Strand = Plus / Minus Query: 283 tttttacatcagaagcaaaacaatcagaggagcaaactgc 322 ||||||||||| ||||||||||||| |||||||||||| Sbjct: 1402 tttttacatcacaagcaaaacaatc---ggagcaaactgc 1366
>gb|AC125348.3| Mus musculus BAC clone RP23-377H20 from chromosome 7, complete sequence Length = 188610 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 64 atctctgtctgtctctccatctc 86 ||||||||||||||||||||||| Sbjct: 147629 atctctgtctgtctctccatctc 147607
>gb|AF372979.1| Mus musculus P locus fat-associated ATPase (Atp10a) gene, exons 2 through 21 and partial cds Length = 129459 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 64 atctctgtctgtctctccatctc 86 ||||||||||||||||||||||| Sbjct: 43009 atctctgtctgtctctccatctc 43031
>gb|AC110090.6| Mus musculus BAC clone RP23-27L4 from chromosome 1, complete sequence Length = 218518 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 65 tctctgtctgtctctccatctc 86 |||||||||||||||||||||| Sbjct: 178502 tctctgtctgtctctccatctc 178481
>gb|AC157769.3| Mus musculus chromosome 1, clone RP24-314L7, complete sequence Length = 131045 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 65 tctctgtctgtctctccatctc 86 |||||||||||||||||||||| Sbjct: 49233 tctctgtctgtctctccatctc 49212
>gb|AC105009.13| Homo sapiens chromosome 8, clone RP11-188K5, complete sequence Length = 175936 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 293 agaagcaaaacaatcagaggag 314 |||||||||||||||||||||| Sbjct: 156654 agaagcaaaacaatcagaggag 156675
>gb|AC105235.7| Homo sapiens chromosome 8, clone CTD-2014D20, complete sequence Length = 121660 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 293 agaagcaaaacaatcagaggag 314 |||||||||||||||||||||| Sbjct: 53120 agaagcaaaacaatcagaggag 53099
>gb|AC018445.21| Homo sapiens chromosome 18, clone RP11-196B3, complete sequence Length = 162265 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 65 tctctgtctgtctctccatctc 86 |||||||||||||||||||||| Sbjct: 138616 tctctgtctgtctctccatctc 138595
>gb|AC110042.12| Mus musculus chromosome 1, clone RP23-278C6, complete sequence Length = 170602 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 65 tctctgtctgtctctccatctc 86 |||||||||||||||||||||| Sbjct: 47388 tctctgtctgtctctccatctc 47409
>emb|CT030233.6| Mouse DNA sequence from clone RP24-103C16 on chromosome 14, complete sequence Length = 216332 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 65 tctctgtctgtctctccatctc 86 |||||||||||||||||||||| Sbjct: 7636 tctctgtctgtctctccatctc 7615
>gb|AC166061.2| Mus musculus BAC clone RP23-177N16 from chromosome 14, complete sequence Length = 213071 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 65 tctctgtctgtctctccatctc 86 |||||||||||||||||||||| Sbjct: 138080 tctctgtctgtctctccatctc 138059
>gb|AC165085.3| Mus musculus BAC clone RP23-222G22 from chromosome 6, complete sequence Length = 201337 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 281 catttttacatcagaagcaaaacaa 305 |||||||||||||||| |||||||| Sbjct: 81738 catttttacatcagaaacaaaacaa 81762
>gb|AC132293.3| Mus musculus BAC clone RP24-322H1 from chromosome 1, complete sequence Length = 158294 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 65 tctctgtctgtctctccatctcact 89 ||||||||| ||||||||||||||| Sbjct: 105847 tctctgtctctctctccatctcact 105871
>gb|L23982.1|HUMCOL7A1X Homo sapiens collagen type VII (COL7A1) gene, promoter region and complete cds Length = 36631 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 tctctgtctgtctctccatct 85 ||||||||||||||||||||| Sbjct: 33236 tctctgtctgtctctccatct 33256
>gb|AC126459.3| Mus musculus BAC clone RP23-181A8 from chromosome 9, complete sequence Length = 217068 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 ctctgtctgtctctccatctc 86 ||||||||||||||||||||| Sbjct: 100825 ctctgtctgtctctccatctc 100805
>emb|CR925759.7| Wallaby DNA sequence from clone MEKBa-346C2, complete sequence Length = 146757 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 tctctgtctgtctctccatct 85 ||||||||||||||||||||| Sbjct: 38541 tctctgtctgtctctccatct 38561
>gb|AC117623.7| Mus musculus chromosome 1, clone RP23-114L12, complete sequence Length = 211821 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 65 tctctgtctgtctctccatctcact 89 ||||||||| ||||||||||||||| Sbjct: 198014 tctctgtctctctctccatctcact 198038
>emb|AL365267.11| Human DNA sequence from clone RP11-789A7 on chromosome 6 Contains a LYPLA1 (lysophospholipase I) pseudogene, complete sequence Length = 49616 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 taaaccaccaccagcaacagc 41 ||||||||||||||||||||| Sbjct: 11041 taaaccaccaccagcaacagc 11061
>gb|AC023891.28| Homo sapiens 3 BAC RP13-81O8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 144189 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 gataataaaccaccaccagca 36 ||||||||||||||||||||| Sbjct: 63530 gataataaaccaccaccagca 63550
>gb|AC121252.4| Homo sapiens chromosome 3 clone RP11-148G20, complete sequence Length = 105166 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 tctctgtctgtctctccatct 85 ||||||||||||||||||||| Sbjct: 4188 tctctgtctgtctctccatct 4168
>emb|AL645842.15| Mouse DNA sequence from clone RP23-20A9 on chromosome 11 Contains two novel genes and the 3' end of the Accn1 gene for neuronal amiloride-sensitive cation channel 1 (degenerin), complete sequence Length = 114190 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 tctctgtctgtctctccatct 85 ||||||||||||||||||||| Sbjct: 28551 tctctgtctgtctctccatct 28531
>emb|BX927292.6| Zebrafish DNA sequence from clone CH211-197O22 in linkage group 19, complete sequence Length = 195006 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 tcagcatctctgtctgtctct 79 ||||||||||||||||||||| Sbjct: 19350 tcagcatctctgtctgtctct 19370
>gb|AC005903.5| Homo sapiens 3 PAC RP5-1034C16 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 63949 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 tctctgtctgtctctccatct 85 ||||||||||||||||||||| Sbjct: 47531 tctctgtctgtctctccatct 47511
>gb|AC144921.12| Mus musculus chromosome 1, clone RP24-214P19, complete sequence Length = 188960 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 65 tctctgtctgtctctccatctcact 89 ||||||||| ||||||||||||||| Sbjct: 19457 tctctgtctctctctccatctcact 19481
>gb|AC149216.5| Mus musculus BAC clone RP24-194H8 from 18, complete sequence Length = 193186 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 tctctgtctgtctctccatct 85 ||||||||||||||||||||| Sbjct: 110318 tctctgtctgtctctccatct 110298
>emb|AL935196.10| Zebrafish DNA sequence from clone DKEYP-79F4 in linkage group 18, complete sequence Length = 105612 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 tcagcatctctgtctgtctct 79 ||||||||||||||||||||| Sbjct: 77218 tcagcatctctgtctgtctct 77198
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 cggtccgttgttgtcgcggc 264 |||||||||||||||||||| Sbjct: 2914683 cggtccgttgttgtcgcggc 2914702
>gb|AC163612.3| Mus musculus BAC clone RP23-89N5 from chromosome 16, complete sequence Length = 207953 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 55966 tctgtctgtctctccatctc 55947
>gb|AC167017.4| Mus musculus BAC clone RP24-86L13 from chromosome 9, complete sequence Length = 183068 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tctctgtctgtctctccatc 84 |||||||||||||||||||| Sbjct: 165888 tctctgtctgtctctccatc 165907
>gb|AC165254.2| Mus musculus BAC clone RP23-285H4 from chromosome 13, complete sequence Length = 229672 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 184980 tctgtctgtctctccatctc 184999
>gb|AC091331.14| Mus musculus chromosome 1, clone RP23-293F4, complete sequence Length = 236163 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 aggggaagggagggaatggc 543 |||||||||||||||||||| Sbjct: 59462 aggggaagggagggaatggc 59443
>gb|AC149610.1| Mus musculus BAC clone RP23-263D11 from chromosome 9, complete sequence Length = 187063 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 110533 tctgtctgtctctccatctc 110552
>gb|AC147988.3| Mus musculus BAC clone RP24-459A9 from chromosome 18, complete sequence Length = 155208 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 126647 tctgtctgtctctccatctc 126628
>gb|AC154442.3| Mus musculus BAC clone RP24-178L2 from chromosome 17, complete sequence Length = 177231 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 ttggcaggggaagggaggga 538 |||||||||||||||||||| Sbjct: 59431 ttggcaggggaagggaggga 59412
>gb|AC166167.2| Mus musculus BAC clone RP23-211D22 from chromosome 13, complete sequence Length = 200448 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 188796 tctgtctgtctctccatctc 188777
>gb|AC146897.5| Gorilla gorilla, clone XX-413A16, complete sequence Length = 188750 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 65 tctctgtctgtctctccatctcac 88 ||||| |||||||||||||||||| Sbjct: 182590 tctctctctgtctctccatctcac 182613
>gb|AC125536.3| Mus musculus BAC clone RP24-142N21 from chromosome 8, complete sequence Length = 199356 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 140660 tctgtctgtctctccatctc 140679
>gb|AC115117.5| Mus musculus BAC clone RP23-76J12 from chromosome 18, complete sequence Length = 197626 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 27026 tctgtctgtctctccatctc 27007
>gb|AC117219.2| Mus musculus BAC clone RP23-344D18 from chromosome 9, complete sequence Length = 216199 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 6261 tctgtctgtctctccatctc 6280
>gb|AC125040.4| Mus musculus BAC clone RP23-335C9 from chromosome 3, complete sequence Length = 203863 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 112908 tctgtctgtctctccatctc 112927
>gb|AC098716.2| Mus musculus BAC clone RP23-2F19 from 9, complete sequence Length = 214654 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tctctgtctgtctctccatc 84 |||||||||||||||||||| Sbjct: 178286 tctctgtctgtctctccatc 178267
>emb|BX005422.5| Human DNA sequence from clone DASS-32K24 on chromosome 6, complete sequence Length = 97466 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctgtctctccatctcactta 91 |||||||||||||||||||| Sbjct: 86241 ctgtctctccatctcactta 86222
>emb|AL805913.4| Human DNA sequence from clone DAQB-22D21 on chromosome 6 Contains the 3' end of the BRD2 gene for bromodomain containing 2, the HLA-DOA gene for the major histocompatibility complex, class II, DO alpha, the HLA-DPA1 gene for the major histocompatibility complex, class II, DP alpha 1, the RPL32P1 pseudogene for ribosomal protein L32 pseudogene 1, the 3' end of the HLA-DPB1 gene for the major histocompatibility complex, class II, DP beta 1 and 1 CpG isalnd, complete sequence Length = 106728 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctgtctctccatctcactta 91 |||||||||||||||||||| Sbjct: 83392 ctgtctctccatctcactta 83373
>emb|AL662824.9| Human DNA sequence from clone XXbac-22I16 on chromosome 6 contains the HLA-DPA1 gene for major histocompatibility complex, class II, DP alpha 1, the HLA-DPB1 gene for major histocompatibility complex, class II, DP beta 1, a ribosomal protein L32 (RPL32) pseudogene, the HLA-DPA2 pseudogene for major histocompatibility complex, class II, DP alpha 2, a pseudogene similar to part of collagens, a novel protein similar to major histocompatibility complex, class II, DP beta 2 (pseudogene), a major histocompatibility complex, class II, DP beta 1 pseudogene, two putative novel transcripts, the COL11A2 gene for collagen, type XI, alpha 2, the RXRB gene for retinoid X receptor, beta, the HKE4 gene for HLA-class II region expressed gene KE4, the 5' end of the HSD17B8 gene for hydroxysteroid (17-beta) dehydrogenase 8 and four CpG islands, complete sequence Length = 187964 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctgtctctccatctcactta 91 |||||||||||||||||||| Sbjct: 40715 ctgtctctccatctcactta 40696
>emb|AL645931.7| Human DNA sequence from clone XXbac-138A21 on chromosome 6 Contains the HLA-DOA, HLA-DPA1 and HLA-DPB1 genes for major histocompatibility complex class II proteins DO alpha, DP alpha 1 and DP beta 1, the HLA-DPA2 major histocompatibility complex class II DP alpha 2 pseudogene, ribosomal protein L32 pseudogene RPL32P1, a pseudogene similar to part of collagens, the 5' end of an HLA class II histocompatibility antigen D or S beta pseudogene, the 5' end of a novel protein similar to major histocompatibility complex class II DP beta 1 precursor and a CpG island, complete sequence Length = 124899 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctgtctctccatctcactta 91 |||||||||||||||||||| Sbjct: 66425 ctgtctctccatctcactta 66406
>emb|AL662889.5| Human DNA sequence from clone RP11-370K11 on chromosome 1 Contains a fatty acid binding protein, muscle and heart (mammary-derived growth inhibitor) pseudogene and part of the AKT3 gene for v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma), complete sequence Length = 127036 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 tatttcaaaggcgaaccaaaacaa 126 |||||||||||| ||||||||||| Sbjct: 114762 tatttcaaaggcaaaccaaaacaa 114785
>emb|AL603824.4| Human DNA sequence from clone RP11-235G8 on chromosome 10 Contains part of the gene for cyclin fold protein 1 (CFP1) (CBCP1), complete sequence Length = 89871 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 74057 tctgtctgtctctccatctc 74038
>emb|AL590553.8| Human DNA sequence from clone RP11-272G1 on chromosome 6, complete sequence Length = 171882 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 aaacttcagctatacaagac 156 |||||||||||||||||||| Sbjct: 98393 aaacttcagctatacaagac 98412
>emb|AL139187.19| Human DNA sequence from clone RP11-81F11 on chromosome 13 Contains a gene for a novel protein similar to RhoGAP, complete sequence Length = 166329 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tctctgtctgtctctccatc 84 |||||||||||||||||||| Sbjct: 138970 tctctgtctgtctctccatc 138989
>emb|Z84483.1|HS46H23 Human DNA sequence from clone RP1-46H23 on chromosome 13. Contains the 3' end of the KL gene for klotho, the 3' end of the gene for a novel RhoGAP domain protein, ESTs, STSs and GSSs, complete sequence Length = 129098 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tctctgtctgtctctccatc 84 |||||||||||||||||||| Sbjct: 95257 tctctgtctgtctctccatc 95238
>gb|AC164250.4| Mus musculus BAC RP24-327O15 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 221612 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 150050 tctgtctgtctctccatctc 150069
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tttttacatcagaagcaaaa 302 |||||||||||||||||||| Sbjct: 1884690 tttttacatcagaagcaaaa 1884709
>emb|CR759795.4| Human DNA sequence from clone DAMC-206D4 on chromosome 6, complete sequence Length = 119898 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctgtctctccatctcactta 91 |||||||||||||||||||| Sbjct: 60862 ctgtctctccatctcactta 60843
>emb|AL590629.16| Mouse DNA sequence from clone RP23-202F23 on chromosome X, complete sequence Length = 171883 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 cagcatctctgtctgtctct 79 |||||||||||||||||||| Sbjct: 155945 cagcatctctgtctgtctct 155926 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 cagcatctctgtctgtctct 79 |||||||||||||||||||| Sbjct: 146269 cagcatctctgtctgtctct 146250
>emb|CR759829.6| Human DNA sequence from clone DADB-17J1 on chromosome 6, complete sequence Length = 93292 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctgtctctccatctcactta 91 |||||||||||||||||||| Sbjct: 80641 ctgtctctccatctcactta 80622
>emb|CR847849.5| Human DNA sequence from clone DAMA-245O6 on chromosome 6, complete sequence Length = 88163 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctgtctctccatctcactta 91 |||||||||||||||||||| Sbjct: 2513 ctgtctctccatctcactta 2494
>emb|CR759904.5| Human DNA sequence from clone DAAP-277G18 on chromosome 6, complete sequence Length = 86480 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctgtctctccatctcactta 91 |||||||||||||||||||| Sbjct: 38906 ctgtctctccatctcactta 38887
>gb|AC073548.5| Homo sapiens chromosome 19 clone RP11-43N16, complete sequence Length = 167722 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 catctctgtctgtctctccatctc 86 ||||||| |||||||||||||||| Sbjct: 68650 catctctctctgtctctccatctc 68673 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 catctctgtctgtctctccatctc 86 ||||||| |||||||||||||||| Sbjct: 68200 catctctctctgtctctccatctc 68223
>emb|CR385029.5| Opossum DNA sequence from clone XX-191G11, complete sequence Length = 123110 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 catctctgtctgtctctccatctc 86 ||||||||||| |||||||||||| Sbjct: 119100 catctctgtctctctctccatctc 119077
>gb|AC151665.26| Medicago truncatula clone mth2-7k4, complete sequence Length = 135880 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 64 atctctgtctgtctctccatctcactta 91 |||||| ||| ||||||||||||||||| Sbjct: 52413 atctctctctctctctccatctcactta 52440
>gb|AC174354.6| Medicago truncatula clone mth2-8m12, complete sequence Length = 122859 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 64 atctctgtctgtctctccatctcactta 91 |||||| ||| ||||||||||||||||| Sbjct: 43744 atctctctctctctctccatctcactta 43771
>gb|AC009729.14| Homo sapiens 12 BAC RP11-1K3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167234 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 attggcaggggaagggaggg 537 |||||||||||||||||||| Sbjct: 23146 attggcaggggaagggaggg 23165
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tttttacatcagaagcaaaa 302 |||||||||||||||||||| Sbjct: 1941436 tttttacatcagaagcaaaa 1941455
>gb|AC090083.3| Homo sapiens chromosome 15, clone CTD-2311K11, complete sequence Length = 96253 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 75240 tctgtctgtctctccatctc 75259
>gb|AC098850.2| Homo sapiens chromosome 17, clone RP11-92B11, complete sequence Length = 178965 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 tctctgtctgtctctccatctcac 88 ||||| |||||||||||||||||| Sbjct: 58519 tctctctctgtctctccatctcac 58496
>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome Length = 2809422 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tttttacatcagaagcaaaa 302 |||||||||||||||||||| Sbjct: 1920018 tttttacatcagaagcaaaa 1920037
>emb|BX548025.9| Zebrafish DNA sequence from clone DKEY-237J22 in linkage group 9, complete sequence Length = 134425 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 aacaaacttcagctatacaa 153 |||||||||||||||||||| Sbjct: 63243 aacaaacttcagctatacaa 63224
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tttttacatcagaagcaaaa 302 |||||||||||||||||||| Sbjct: 1845887 tttttacatcagaagcaaaa 1845906
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome Length = 2872769 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tttttacatcagaagcaaaa 302 |||||||||||||||||||| Sbjct: 1942196 tttttacatcagaagcaaaa 1942215
>gb|AC008536.7| Homo sapiens chromosome 5 clone CTC-487M23, complete sequence Length = 178056 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ataataaaccaccaccagca 36 |||||||||||||||||||| Sbjct: 135379 ataataaaccaccaccagca 135360
>dbj|AK044281.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930005G22 product:unclassifiable, full insert sequence Length = 1901 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tctctgtctgtctctccatc 84 |||||||||||||||||||| Sbjct: 187 tctctgtctgtctctccatc 206
>gb|AC148676.1| Macaca mulatta Major Histocompatibility Complex BAC MMU118H05, complete sequence Length = 155090 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctgtctctccatctcactta 91 |||||||||||||||||||| Sbjct: 117958 ctgtctctccatctcactta 117939
>emb|CR378092.1| Pinus pinaster SSR, clone PPB2E01 Length = 589 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 tctgtctctccatctcactt 90 |||||||||||||||||||| Sbjct: 216 tctgtctctccatctcactt 235
>gb|U33915.1|CPU33915 Craterostigma plantagineum myb-related transcription factor Cpm10 (cpm10) gene, complete cds Length = 3305 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 catctctgtctgtctctccatctc 86 ||||||||||| |||||||||||| Sbjct: 1327 catctctgtctctctctccatctc 1350
>gb|AC131009.7| Homo sapiens 12 BAC RP11-417L19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170327 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 atctctgtctgtctctccatctca 87 ||||||||||||||||||| |||| Sbjct: 73922 atctctgtctgtctctccaactca 73945
>gb|AF271715.1|AF271715 Staphylococcus aureus serine protease spl operon, complete sequence Length = 6120 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 tttttacatcagaagcaaaa 302 |||||||||||||||||||| Sbjct: 2475 tttttacatcagaagcaaaa 2456
>gb|AC011901.4| Homo sapiens BAC clone RP11-547P13 from 2, complete sequence Length = 201567 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 gtctcttgatgacagcatag 437 |||||||||||||||||||| Sbjct: 200967 gtctcttgatgacagcatag 200986
>gb|AC154312.2| Mus musculus BAC clone RP23-354D20 from chromosome 16, complete sequence Length = 197884 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 123018 tctgtctgtctctccatctc 122999
>gb|AC126352.6| Homo sapiens chromosome 17, clone CTD-2509K7, complete sequence Length = 211403 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 65 tctctgtctgtctctccatctcac 88 ||||| |||||||||||||||||| Sbjct: 184631 tctctctctgtctctccatctcac 184654
>gb|AC099518.3| Homo sapiens chromosome 16 clone RP11-626G11, complete sequence Length = 216264 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ttaacaaggcacggtatttc 108 |||||||||||||||||||| Sbjct: 135490 ttaacaaggcacggtatttc 135471
>gb|AC005036.1| Homo sapiens BAC clone RP11-364H22 from 2, complete sequence Length = 199684 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 tggcaggggaagggagggaa 539 |||||||||||||||||||| Sbjct: 37281 tggcaggggaagggagggaa 37300
>gb|AC139714.1| Homo sapiens BAC clone RP11-484I7 from 2, complete sequence Length = 4170 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 gtctcttgatgacagcatag 437 |||||||||||||||||||| Sbjct: 1400 gtctcttgatgacagcatag 1419
>gb|AC087738.13| Homo sapiens chromosome 15, clone RP11-365F16, complete sequence Length = 181511 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 41663 tctgtctgtctctccatctc 41682
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tttttacatcagaagcaaaa 302 |||||||||||||||||||| Sbjct: 1905356 tttttacatcagaagcaaaa 1905375
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome Length = 2814816 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tttttacatcagaagcaaaa 302 |||||||||||||||||||| Sbjct: 1863643 tttttacatcagaagcaaaa 1863662
>gb|AC117735.8| Mus musculus chromosome 5, clone RP24-132L16, complete sequence Length = 183861 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tctctgtctgtctctccatc 84 |||||||||||||||||||| Sbjct: 57931 tctctgtctgtctctccatc 57950
>gb|AC154780.2| Mus musculus BAC clone RP24-462E4 from 13, complete sequence Length = 161998 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 84956 tctgtctgtctctccatctc 84975
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 catctctgtctgtctctccatctc 86 ||||||| |||||||||||||||| Sbjct: 1843648 catctctctctgtctctccatctc 1843671
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tctctgtctgtctctccatc 84 |||||||||||||||||||| Sbjct: 993810 tctctgtctgtctctccatc 993791
>gb|AF098950.1|AF098950 Homo sapiens COQ7 protein gene, promoter and partial cds Length = 1133 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ttaacaaggcacggtatttc 108 |||||||||||||||||||| Sbjct: 792 ttaacaaggcacggtatttc 773
>dbj|AP001979.7| Homo sapiens genomic DNA, chromosome 11 clone:RP11-259P6, complete sequence Length = 147533 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 catctctgtctgtctctccatctc 86 ||||||||||| |||||||||||| Sbjct: 31158 catctctgtctctctctccatctc 31135
>gb|AC164973.4| Ornithorhynchus anatinus BAC clone OABb-265H16 from chromosome unknown, complete sequence Length = 129291 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 gcatctctgtctgtctctcc 81 |||||||||||||||||||| Sbjct: 48569 gcatctctgtctgtctctcc 48550
>emb|AL929117.7| Mouse DNA sequence from clone RP23-442K5 on chromosome 2, complete sequence Length = 161940 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 54423 tctgtctgtctctccatctc 54404
>gb|AC140231.3| Mus musculus BAC clone RP24-493L15 from 6, complete sequence Length = 185517 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 158311 tctgtctgtctctccatctc 158292
>emb|CT033749.8| Mouse DNA sequence from clone RP23-14N10 on chromosome 17, complete sequence Length = 212052 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 ttggcaggggaagggaggga 538 |||||||||||||||||||| Sbjct: 1275 ttggcaggggaagggaggga 1256
>gb|AC132481.4| Mus musculus BAC clone RP23-14I14 from 17, complete sequence Length = 225031 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tctgtctgtctctccatctc 86 |||||||||||||||||||| Sbjct: 91159 tctgtctgtctctccatctc 91140
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome Length = 2742531 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tttttacatcagaagcaaaa 302 |||||||||||||||||||| Sbjct: 1817508 tttttacatcagaagcaaaa 1817527
>gb|U60589.1|SAU60589 Staphylococcus aureus novel antigen gene, complete cds Length = 1022 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 tttttacatcagaagcaaaa 302 |||||||||||||||||||| Sbjct: 888 tttttacatcagaagcaaaa 869
>emb|Z95437.1|HSA1 Human DNA sequence from clone XX-A1 on chromosome 6. Contains ESTs, GSSs and a CpG island, complete sequence Length = 18577 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ctgtctctccatctcactta 91 |||||||||||||||||||| Sbjct: 2927 ctgtctctccatctcactta 2946
>dbj|AB034443.1| Human immunodeficiency virus type 1 proviral gene for Tat protein exon 2 region, partial CDS, isolate:patient 6, clone:tat-2(6)-01 Length = 91 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 catctctgtctgtctctccatctc 86 ||||||||||| |||||||||||| Sbjct: 76 catctctgtctctctctccatctc 53
>dbj|AB034436.1| Human immunodeficiency virus type 1 proviral gene for Tat protein exon 2 region, partial CDS, isolate:patient 2, clone:tat-2(2)-01 Length = 91 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 catctctgtctgtctctccatctc 86 ||||||||||| |||||||||||| Sbjct: 76 catctctgtctctctctccatctc 53
>dbj|AB034387.1| Human immunodeficiency virus type 1 proviral gene for Rev protein exon 2 region, partial CDS, isolate:patient 6, clone:rev-2(6)-01 Length = 275 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 catctctgtctgtctctccatctc 86 ||||||||||| |||||||||||| Sbjct: 76 catctctgtctctctctccatctc 53
>dbj|AB034383.1| Human immunodeficiency virus type 1 proviral gene for Rev protein exon 2 region, partial CDS, isolate:patient 2, clone:rev-2(2)-01 Length = 275 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 catctctgtctgtctctccatctc 86 ||||||||||| |||||||||||| Sbjct: 76 catctctgtctctctctccatctc 53 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,267,967 Number of Sequences: 3902068 Number of extensions: 5267967 Number of successful extensions: 142084 Number of sequences better than 10.0: 109 Number of HSP's better than 10.0 without gapping: 109 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 141531 Number of HSP's gapped (non-prelim): 543 length of query: 553 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 530 effective length of database: 17,143,297,704 effective search space: 9085947783120 effective search space used: 9085947783120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
