ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21a22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105906.1| Zea mays PCO103687 mRNA sequence 161 3e-36
2ref|XM_465970.1| Oryza sativa (japonica cultivar-group), mRNA 145 2e-31
3dbj|AK064485.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
4gb|DQ286558.1| Oryza sativa (japonica cultivar-group) glyceropho... 145 2e-31
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
6dbj|AP004062.3| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
7gb|BT016831.1| Zea mays clone Contig664 mRNA sequence 105 2e-19
8ref|XM_472311.1| Oryza sativa (japonica cultivar-group), predic... 90 1e-14
9gb|BT018907.1| Zea mays clone EL01T0402D04.d mRNA sequence 80 1e-11
10gb|BT016290.1| Zea mays clone Contig123 mRNA sequence 80 1e-11
11gb|AY109175.1| Zea mays PCO133092 mRNA sequence 80 1e-11
12emb|AL606621.3|OSJN00054 Oryza sativa genomic DNA, chromosome 4,... 78 4e-11
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
14gb|AC159298.3| Mus musculus BAC clone RP23-265N1 from chromosome... 44 0.55
15gb|AC058789.20| Mus musculus strain C57BL/6J clone rp23-428p20 m... 44 0.55
16gb|AC151965.2| Mus musculus BAC clone RP24-173B17 from chromosom... 44 0.55
17emb|BX469911.9| Zebrafish DNA sequence from clone DKEY-13K9 in l... 44 0.55
18gb|AC175116.2| Mus musculus BAC clone RP23-396H16 from chromosom... 44 0.55
19gb|AC011468.8| Homo sapiens chromosome 19 clone CTC-471J1, compl... 42 2.2
20dbj|AK044393.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 42 2.2
21dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
22emb|BX649531.7| Zebrafish DNA sequence from clone CH211-285L4 in... 42 2.2
23gb|AC125616.8| Homo sapiens 12 BAC RP11-728G15 (Roswell Park Can... 42 2.2
24gb|AC011469.6|AC011469 Homo sapiens chromosome 19 clone CTC-475D... 42 2.2
25gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.2
26emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa... 42 2.2
27gb|AC154034.1| Medicago truncatula chromosome 7 BAC clone mth2-7... 40 8.5
28gb|AC149717.2| Bos taurus BAC CH240-194N8 (Children's Hospital ... 40 8.5
29gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 8.5
30emb|AL353801.13| Human DNA sequence from clone RP11-285G1 on chr... 40 8.5
31gb|AC136475.7| Homo sapiens chromosome 11, clone RP11-326C3, com... 40 8.5
32emb|AL035106.28|HS998C11 Human DNA sequence from clone RP5-998C1... 40 8.5
33emb|AL162754.2|NMA3Z2491 Neisseria meningitidis serogroup A stra... 40 8.5
34gb|AC126564.7| Homo sapiens 12 BAC RP11-638F5 (Roswell Park Canc... 40 8.5
35gb|AC124148.15| Pan troglodytes clone rp43-71k6, complete sequence 40 8.5
36gb|AC123978.5| Papio anubis clone rp41-211d5, complete sequence 40 8.5
37gb|AE012541.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 8.5
38dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 8.5
39gb|AC104027.4| Homo sapiens chromosome 8, clone RP11-451O18, com... 40 8.5
40gb|AC104005.3| Homo sapiens chromosome 8, clone RP11-158M23, com... 40 8.5
41ref|NM_054068.2| Mus musculus visual system homeobox 1 homolog (... 40 8.5
42gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 8.5
43dbj|AK044687.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 40 8.5
44gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 8.5
45dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
46dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
47gb|AC103831.4| Homo sapiens chromosome 8, clone RP11-1023P17, co... 40 8.5
48gb|AC011445.6|AC011445 Homo sapiens chromosome 19 clone CTC-246B... 40 8.5
49dbj|AP005449.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
50dbj|AP005574.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
51dbj|AP005555.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
52gb|BC057647.1| Mus musculus visual system homeobox 1 homolog (ze... 40 8.5
53gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 40 8.5
54dbj|AP003079.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.5
55emb|AL845174.4| Mouse DNA sequence from clone RP23-156P22 on chr... 40 8.5 
>gb|AY105906.1| Zea mays PCO103687 mRNA sequence
          Length = 1458

 Score =  161 bits (81), Expect = 3e-36
 Identities = 129/145 (88%)
 Strand = Plus / Minus

                                                                        
Query: 400  gatgaggtcagagacggcccccgtgatctccggcacgaggtcgacgatcaccccgttcac 459
            |||||| |||||||| ||| | |||||||||||||| ||||||||||| |||||||||||
Sbjct: 1133 gatgagctcagagactgcctcggtgatctccggcaccaggtcgacgatgaccccgttcac 1074

                                                                        
Query: 460  ccccatgaggtgctgcatgtacactgcctccggcacgttattgagtgtcccgtaagttag 519
             ||||||||||||||||||||||| |||||||||||||| || | ||| || || |||||
Sbjct: 1073 tcccatgaggtgctgcatgtacaccgcctccggcacgttgttcaatgttccataggttag 1014

                                     
Query: 520  tagggagaggtcagcctccttgatc 544
             |||||||||| |||||||||||||
Sbjct: 1013 cagggagaggttagcctccttgatc 989



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                        
Query: 268  ttattgcacaagctccggcatcagcctcagcaggaatgaaatctcccgctgcgtgaaatt 327
            |||||| |||||||| || || |||||||||||||| || ||||| ||||||| ||||||
Sbjct: 1271 ttattggacaagctcaggaataagcctcagcaggaacgagatctcgcgctgcgagaaatt 1212

               
Query: 328  cgg 330
            |||
Sbjct: 1211 cgg 1209
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>ref|XM_465970.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1139

 Score =  145 bits (73), Expect = 2e-31
 Identities = 127/145 (87%)
 Strand = Plus / Minus

                                                                       
Query: 400 gatgaggtcagagacggcccccgtgatctccggcacgaggtcgacgatcaccccgttcac 459
           |||||| |||||||||||| | ||||||||| |||| |||||||||||||| ||||||||
Sbjct: 694 gatgagctcagagacggcctcggtgatctcctgcactaggtcgacgatcacaccgttcac 635

                                                                       
Query: 460 ccccatgaggtgctgcatgtacactgcctccggcacgttattgagtgtcccgtaagttag 519
           |||||| || || ||||||||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 634 ccccatcagatgttgcatgtacaccgcctccggtacgttgttcagtgttccataagtcag 575

                                    
Query: 520 tagggagaggtcagcctccttgatc 544
           ||||||||||| |||||| ||||||
Sbjct: 574 tagggagaggttagcctctttgatc 550



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 268 ttattgcacaagctccggcatcagcctcagcaggaatga 306
           ||||||||||||||| || || |||||||||| ||||||
Sbjct: 823 ttattgcacaagctcagggatgagcctcagcaagaatga 785
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>dbj|AK064485.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-111-B07, full
           insert sequence
          Length = 1139

 Score =  145 bits (73), Expect = 2e-31
 Identities = 127/145 (87%)
 Strand = Plus / Minus

                                                                       
Query: 400 gatgaggtcagagacggcccccgtgatctccggcacgaggtcgacgatcaccccgttcac 459
           |||||| |||||||||||| | ||||||||| |||| |||||||||||||| ||||||||
Sbjct: 694 gatgagctcagagacggcctcggtgatctcctgcactaggtcgacgatcacaccgttcac 635

                                                                       
Query: 460 ccccatgaggtgctgcatgtacactgcctccggcacgttattgagtgtcccgtaagttag 519
           |||||| || || ||||||||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 634 ccccatcagatgttgcatgtacaccgcctccggtacgttgttcagtgttccataagtcag 575

                                    
Query: 520 tagggagaggtcagcctccttgatc 544
           ||||||||||| |||||| ||||||
Sbjct: 574 tagggagaggttagcctctttgatc 550



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 268 ttattgcacaagctccggcatcagcctcagcaggaatga 306
           ||||||||||||||| || || |||||||||| ||||||
Sbjct: 823 ttattgcacaagctcagggatgagcctcagcaagaatga 785
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>gb|DQ286558.1| Oryza sativa (japonica cultivar-group) glycerophosphoryl diester
           phosphodisterase (GDPD) mRNA, partial cds
          Length = 978

 Score =  145 bits (73), Expect = 2e-31
 Identities = 127/145 (87%)
 Strand = Plus / Minus

                                                                       
Query: 400 gatgaggtcagagacggcccccgtgatctccggcacgaggtcgacgatcaccccgttcac 459
           |||||| |||||||||||| | ||||||||| |||| |||||||||||||| ||||||||
Sbjct: 849 gatgagctcagagacggcctcggtgatctcctgcactaggtcgacgatcacaccgttcac 790

                                                                       
Query: 460 ccccatgaggtgctgcatgtacactgcctccggcacgttattgagtgtcccgtaagttag 519
           |||||| || || ||||||||||| |||||||| ||||| || ||||| || ||||| ||
Sbjct: 789 ccccatcagatgttgcatgtacaccgcctccggtacgttgttcagtgttccataagtcag 730

                                    
Query: 520 tagggagaggtcagcctccttgatc 544
           ||||||||||| |||||| ||||||
Sbjct: 729 tagggagaggttagcctctttgatc 705



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 268 ttattgcacaagctccggcatcagcctcagcaggaatga 306
           ||||||||||||||| || || |||||||||| ||||||
Sbjct: 978 ttattgcacaagctcagggatgagcctcagcaagaatga 940
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  109 bits (55), Expect = 1e-20
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                            
Query: 400      gatgaggtcagagacggcccccgtgatctccggcacgaggtcgacgatcaccccgttcac 459
                |||||| |||||||||||| | ||||||||| |||| |||||||||||||| ||||||||
Sbjct: 18640166 gatgagctcagagacggcctcggtgatctcctgcactaggtcgacgatcacaccgttcac 18640107

                                                       
Query: 460      ccccatgaggtgctgcatgtacactgcctccggcacgtt 498
                |||||| || || ||||||||||| |||||||| |||||
Sbjct: 18640106 ccccatcagatgttgcatgtacaccgcctccggtacgtt 18640068



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                       
Query: 268      ttattgcacaagctccggcatcagcctcagcaggaatga 306
                ||||||||||||||| || || |||||||||| ||||||
Sbjct: 18640295 ttattgcacaagctcagggatgagcctcagcaagaatga 18640257



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                          
Query: 503      agtgtcccgtaagttagtagggagaggtcagcctccttgatc 544
                ||||| || ||||| ||||||||||||| |||||| ||||||
Sbjct: 18639973 agtgttccataagtcagtagggagaggttagcctctttgatc 18639932



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 581      gcctcggacacgatcccttgcatgccagtggagaggcacagcttg 625
                ||||| |||||||| |||||||||||  ||| |||||| ||||||
Sbjct: 18639895 gcctccgacacgattccttgcatgccgctggcgaggcatagcttg 18639851
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>dbj|AP004062.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1471_E11
          Length = 103912

 Score =  109 bits (55), Expect = 1e-20
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                         
Query: 400   gatgaggtcagagacggcccccgtgatctccggcacgaggtcgacgatcaccccgttcac 459
             |||||| |||||||||||| | ||||||||| |||| |||||||||||||| ||||||||
Sbjct: 66522 gatgagctcagagacggcctcggtgatctcctgcactaggtcgacgatcacaccgttcac 66463

                                                    
Query: 460   ccccatgaggtgctgcatgtacactgcctccggcacgtt 498
             |||||| || || ||||||||||| |||||||| |||||
Sbjct: 66462 ccccatcagatgttgcatgtacaccgcctccggtacgtt 66424



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 268   ttattgcacaagctccggcatcagcctcagcaggaatga 306
             ||||||||||||||| || || |||||||||| ||||||
Sbjct: 66651 ttattgcacaagctcagggatgagcctcagcaagaatga 66613



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 503   agtgtcccgtaagttagtagggagaggtcagcctccttgatc 544
             ||||| || ||||| ||||||||||||| |||||| ||||||
Sbjct: 66329 agtgttccataagtcagtagggagaggttagcctctttgatc 66288



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 581   gcctcggacacgatcccttgcatgccagtggagaggcacagcttg 625
             ||||| |||||||| |||||||||||  ||| |||||| ||||||
Sbjct: 66251 gcctccgacacgattccttgcatgccgctggcgaggcatagcttg 66207
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>gb|BT016831.1| Zea mays clone Contig664 mRNA sequence
          Length = 1404

 Score =  105 bits (53), Expect = 2e-19
 Identities = 122/145 (84%)
 Strand = Plus / Minus

                                                                        
Query: 400  gatgaggtcagagacggcccccgtgatctccggcacgaggtcgacgatcaccccgttcac 459
            |||||| ||| |||| ||| | |||||||||||| | ||||||||||| ||||||||| |
Sbjct: 1125 gatgagctcaaagactgcctcggtgatctccggccccaggtcgacgatgaccccgttccc 1066

                                                                        
Query: 460  ccccatgaggtgctgcatgtacactgcctccggcacgttattgagtgtcccgtaagttag 519
             ||||||||||||||| |||| || ||||||||| |||| || | ||| || || |||||
Sbjct: 1065 tcccatgaggtgctgcgtgtaaaccgcctccggcgcgttgttcaatgttccataggttag 1006

                                     
Query: 520  tagggagaggtcagcctccttgatc 544
             |||||||||| ||| |||||||||
Sbjct: 1005 cagggagaggttagcttccttgatc 981



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                        
Query: 268  ttattgcacaagctccggcatcagcctcagcaggaatgaaatctcccgctgcgtgaaatt 327
            |||||| ||||| || || || |||||||||||||| || ||||| ||||||| ||||||
Sbjct: 1263 ttattggacaagttcaggaataagcctcagcaggaacgagatctcgcgctgcgagaaatt 1204

               
Query: 328  cgg 330
            |||
Sbjct: 1203 cgg 1201
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>ref|XM_472311.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1191

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 102/121 (84%)
 Strand = Plus / Minus

                                                                       
Query: 424 gatctccggcacgaggtcgacgatcaccccgttcacccccatgaggtgctgcatgtacac 483
           |||||||| ||| |||||||||||||| |||| ||||||||| || ||||||| ||||||
Sbjct: 987 gatctccgccaccaggtcgacgatcacgccgtccacccccatcagctgctgcaagtacac 928

                                                                       
Query: 484 tgcctccggcacgttattgagtgtcccgtaagttagtagggagaggtcagcctccttgat 543
            |||| ||||||||| |||||    ||||| || || ||||||||| | |||||||||||
Sbjct: 927 cgccttcggcacgttgttgagctggccgtaggtgaggagggagaggccggcctccttgat 868

            
Query: 544 c 544
           |
Sbjct: 867 c 867
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>gb|BT018907.1| Zea mays clone EL01T0402D04.d mRNA sequence
          Length = 934

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                       
Query: 413 acggcccccgtgatctccggcacgaggtcgacgatcaccccgttcacccccatgaggtgc 472
           |||||| ||| ||||||| |||| ||||||||||| || |||| ||||||||| ||||||
Sbjct: 634 acggcctccgcgatctcctgcaccaggtcgacgatgacgccgtccacccccatcaggtgc 575

                                           
Query: 473 tgcatgtacactgcctccggcacgttattgag 504
           |||| ||||||  |||||| |||||| |||||
Sbjct: 574 tgcacgtacaccacctccgccacgttgttgag 543
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>gb|BT016290.1| Zea mays clone Contig123 mRNA sequence
          Length = 833

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                       
Query: 413 acggcccccgtgatctccggcacgaggtcgacgatcaccccgttcacccccatgaggtgc 472
           |||||| ||| ||||||| |||| ||||||||||| || |||| ||||||||| ||||||
Sbjct: 522 acggcctccgcgatctcctgcaccaggtcgacgatgacgccgtccacccccatcaggtgc 463

                                           
Query: 473 tgcatgtacactgcctccggcacgttattgag 504
           |||| ||||||  |||||| |||||| |||||
Sbjct: 462 tgcacgtacaccacctccgccacgttgttgag 431
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>gb|AY109175.1| Zea mays PCO133092 mRNA sequence
          Length = 1116

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                       
Query: 413 acggcccccgtgatctccggcacgaggtcgacgatcaccccgttcacccccatgaggtgc 472
           |||||| ||| ||||||| |||| ||||||||||| || |||| ||||||||| ||||||
Sbjct: 782 acggcctccgcgatctcctgcaccaggtcgacgatgacgccgtccacccccatcaggtgc 723

                                           
Query: 473 tgcatgtacactgcctccggcacgttattgag 504
           |||| ||||||  |||||| |||||| |||||
Sbjct: 722 tgcacgtacaccacctccgccacgttgttgag 691
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>emb|AL606621.3|OSJN00054 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072K14,
             complete sequence
          Length = 139855

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                         
Query: 424   gatctccggcacgaggtcgacgatcaccccgttcacccccatgaggtgctgcatgtacac 483
             |||||||| ||| |||||||||||||| |||| ||||||||| || ||||||| ||||||
Sbjct: 38719 gatctccgccaccaggtcgacgatcacgccgtccacccccatcagctgctgcaagtacac 38660

                            
Query: 484   tgcctccggcacgtt 498
              |||| |||||||||
Sbjct: 38659 cgccttcggcacgtt 38645
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                            
Query: 424      gatctccggcacgaggtcgacgatcaccccgttcacccccatgaggtgctgcatgtacac 483
                |||||||| ||| |||||||||||||| |||| ||||||||| || ||||||| ||||||
Sbjct: 19387465 gatctccgccaccaggtcgacgatcacgccgtccacccccatcagctgctgcaagtacac 19387406

                               
Query: 484      tgcctccggcacgtt 498
                 |||| |||||||||
Sbjct: 19387405 cgccttcggcacgtt 19387391
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>gb|AC159298.3| Mus musculus BAC clone RP23-265N1 from chromosome 5, complete sequence
          Length = 175995

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 519   gtagggagaggtcagcctcctt 540
             ||||||||||||||||||||||
Sbjct: 81021 gtagggagaggtcagcctcctt 81042
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>gb|AC058789.20| Mus musculus strain C57BL/6J clone rp23-428p20 map 5, complete sequence
          Length = 181121

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 519   gtagggagaggtcagcctcctt 540
             ||||||||||||||||||||||
Sbjct: 78883 gtagggagaggtcagcctcctt 78904
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>gb|AC151965.2| Mus musculus BAC clone RP24-173B17 from chromosome 5, complete sequence
          Length = 221687

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 519   gtagggagaggtcagcctcctt 540
             ||||||||||||||||||||||
Sbjct: 11769 gtagggagaggtcagcctcctt 11748
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>emb|BX469911.9| Zebrafish DNA sequence from clone DKEY-13K9 in linkage group 5,
             complete sequence
          Length = 226730

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 188   cttccctccacaagtggctcct 209
             ||||||||||||||||||||||
Sbjct: 42478 cttccctccacaagtggctcct 42499
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>gb|AC175116.2| Mus musculus BAC clone RP23-396H16 from chromosome 5, complete sequence
          Length = 210409

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 519   gtagggagaggtcagcctcctt 540
             ||||||||||||||||||||||
Sbjct: 72941 gtagggagaggtcagcctcctt 72962
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>gb|AC011468.8| Homo sapiens chromosome 19 clone CTC-471J1, complete sequence
          Length = 177444

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 393    gggaggagatgaggtcagaga 413
              |||||||||||||||||||||
Sbjct: 101451 gggaggagatgaggtcagaga 101471
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>dbj|AK044393.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
            clone:A930010K22 product:TRANSCRIPTION FACTOR VSX1
            (VISUAL SYSTEM HOMEOBOX 1) (HOMEODOMAIN PROTEIN RINX),
            full insert sequence
          Length = 3400

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 400  gatgaggtcagagacggcccc 420
            |||||||||||||||||||||
Sbjct: 2769 gatgaggtcagagacggcccc 2749
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 16      tatggagggagtattatgttt 36
               |||||||||||||||||||||
Sbjct: 1489224 tatggagggagtattatgttt 1489204
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>emb|BX649531.7| Zebrafish DNA sequence from clone CH211-285L4 in linkage group 15,
             complete sequence
          Length = 185865

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 93    ctcgctacaacatgtataaat 113
             |||||||||||||||||||||
Sbjct: 49490 ctcgctacaacatgtataaat 49470
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>gb|AC125616.8| Homo sapiens 12 BAC RP11-728G15 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 85123

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 393   gggaggagatgaggtcagaga 413
             |||||||||||||||||||||
Sbjct: 68003 gggaggagatgaggtcagaga 67983
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>gb|AC011469.6|AC011469 Homo sapiens chromosome 19 clone CTC-475D23, complete sequence
          Length = 110569

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 393   gggaggagatgaggtcagaga 413
             |||||||||||||||||||||
Sbjct: 24290 gggaggagatgaggtcagaga 24270
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 16      tatggagggagtattatgttt 36
               |||||||||||||||||||||
Sbjct: 1489224 tatggagggagtattatgttt 1489204
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>emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 183385

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 16     tatggagggagtattatgttt 36
              |||||||||||||||||||||
Sbjct: 136508 tatggagggagtattatgttt 136528
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>gb|AC154034.1| Medicago truncatula chromosome 7 BAC clone mth2-71n23, complete
             sequence
          Length = 125195

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tccatatggagggagtatta 31
             ||||||||||||||||||||
Sbjct: 50588 tccatatggagggagtatta 50607
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>gb|AC149717.2| Bos taurus  BAC CH240-194N8 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 140707

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 393   gggaggagatgaggtcagag 412
             ||||||||||||||||||||
Sbjct: 21050 gggaggagatgaggtcagag 21069
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 320     gtgaaattcggcgtcgacgc 339
               ||||||||||||||||||||
Sbjct: 2493467 gtgaaattcggcgtcgacgc 2493448
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>emb|AL353801.13| Human DNA sequence from clone RP11-285G1 on chromosome 10 Contains two
              novel genes, the gene for AD037 protein (AD037), the gene
              for a decidual protein induced by progesterone (DEPP), a
              novel gene (FLJ30567), the ZNF22 gene for zinc finger
              protein 22 (KOX 15), a novel gene and two CpG islands,
              complete sequence
          Length = 222490

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 394    ggaggagatgaggtcagaga 413
              ||||||||||||||||||||
Sbjct: 131865 ggaggagatgaggtcagaga 131884
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>gb|AC136475.7| Homo sapiens chromosome 11, clone RP11-326C3, complete sequence
          Length = 143779

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 391   cggggaggagatgaggtcag 410
             ||||||||||||||||||||
Sbjct: 72267 cggggaggagatgaggtcag 72286
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>emb|AL035106.28|HS998C11 Human DNA sequence from clone RP5-998C11 on chromosome 20q13.13-13.2
             Contains part of the gene for P-Rex1 protein (KIAA1415,
             PREX1), complete sequence
          Length = 131007

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 394   ggaggagatgaggtcagaga 413
             ||||||||||||||||||||
Sbjct: 83220 ggaggagatgaggtcagaga 83201
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>emb|AL162754.2|NMA3Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome;
             segment 3/7
          Length = 311321

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 542   atcatcggtatggcggtcgg 561
             ||||||||||||||||||||
Sbjct: 48399 atcatcggtatggcggtcgg 48380
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>gb|AC126564.7| Homo sapiens 12 BAC RP11-638F5 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 121242

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  ccaattctccagggagagag 146
            ||||||||||||||||||||
Sbjct: 6428 ccaattctccagggagagag 6409
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>gb|AC124148.15| Pan troglodytes clone rp43-71k6, complete sequence
          Length = 194187

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 394  ggaggagatgaggtcagaga 413
            ||||||||||||||||||||
Sbjct: 1873 ggaggagatgaggtcagaga 1892
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>gb|AC123978.5| Papio anubis clone rp41-211d5, complete sequence
          Length = 180097

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 394   ggaggagatgaggtcagaga 413
             ||||||||||||||||||||
Sbjct: 25440 ggaggagatgaggtcagaga 25459
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>gb|AE012541.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 449
            of 460 of the complete genome
          Length = 10481

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 114  caatccccaattcccaattc 133
            ||||||||||||||||||||
Sbjct: 9592 caatccccaattcccaattc 9573
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 415     ggcccccgtgatctccggca 434
               ||||||||||||||||||||
Sbjct: 3919453 ggcccccgtgatctccggca 3919434
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>gb|AC104027.4| Homo sapiens chromosome 8, clone RP11-451O18, complete sequence
          Length = 177650

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 601    catgccagtggagaggcaca 620
              ||||||||||||||||||||
Sbjct: 128157 catgccagtggagaggcaca 128176
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>gb|AC104005.3| Homo sapiens chromosome 8, clone RP11-158M23, complete sequence
          Length = 185231

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 601  catgccagtggagaggcaca 620
            ||||||||||||||||||||
Sbjct: 2051 catgccagtggagaggcaca 2032
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>ref|NM_054068.2| Mus musculus visual system homeobox 1 homolog (zebrafish) (Vsx1),
            mRNA
          Length = 3579

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  atgaggtcagagacggcccc 420
            ||||||||||||||||||||
Sbjct: 2887 atgaggtcagagacggcccc 2868
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 114     caatccccaattcccaattc 133
               ||||||||||||||||||||
Sbjct: 5034838 caatccccaattcccaattc 5034819
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>dbj|AK044687.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
            clone:A930033D24 product:visual system homeobox 1 homolog
            (zebrafish), full insert sequence
          Length = 3401

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  atgaggtcagagacggcccc 420
            ||||||||||||||||||||
Sbjct: 2769 atgaggtcagagacggcccc 2750
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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 542    atcatcggtatggcggtcgg 561
              ||||||||||||||||||||
Sbjct: 590869 atcatcggtatggcggtcgg 590850
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 17       atggagggagtattatgttt 36
                ||||||||||||||||||||
Sbjct: 17860671 atggagggagtattatgttt 17860690
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 17       atggagggagtattatgttt 36
                ||||||||||||||||||||
Sbjct: 13312261 atggagggagtattatgttt 13312280
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>gb|AC103831.4| Homo sapiens chromosome 8, clone RP11-1023P17, complete sequence
          Length = 206357

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    gaggagatgaggtcagagac 414
              ||||||||||||||||||||
Sbjct: 156152 gaggagatgaggtcagagac 156133
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>gb|AC011445.6|AC011445 Homo sapiens chromosome 19 clone CTC-246B18, complete sequence
          Length = 138538

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 393  gggaggagatgaggtcagag 412
            ||||||||||||||||||||
Sbjct: 1028 gggaggagatgaggtcagag 1047
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>dbj|AP005449.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0427E01
          Length = 146395

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    atggagggagtattatgttt 36
             ||||||||||||||||||||
Sbjct: 74071 atggagggagtattatgttt 74090
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>dbj|AP005574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1595_D08
          Length = 116351

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     atggagggagtattatgttt 36
              ||||||||||||||||||||
Sbjct: 101315 atggagggagtattatgttt 101334
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>dbj|AP005555.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1118_B06
          Length = 106678

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    atggagggagtattatgttt 36
             ||||||||||||||||||||
Sbjct: 11490 atggagggagtattatgttt 11509
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>gb|BC057647.1| Mus musculus visual system homeobox 1 homolog (zebrafish), mRNA (cDNA
            clone MGC:67932 IMAGE:4511665), complete cds
          Length = 3579

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  atgaggtcagagacggcccc 420
            ||||||||||||||||||||
Sbjct: 2887 atgaggtcagagacggcccc 2868
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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 542     atcatcggtatggcggtcgg 561
               ||||||||||||||||||||
Sbjct: 1384485 atcatcggtatggcggtcgg 1384504
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>dbj|AP003079.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-141E21, complete
             sequence
          Length = 166045

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 394   ggaggagatgaggtcagaga 413
             ||||||||||||||||||||
Sbjct: 63480 ggaggagatgaggtcagaga 63461
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>emb|AL845174.4| Mouse DNA sequence from clone RP23-156P22 on chromosome 2, complete
              sequence
          Length = 216475

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 401    atgaggtcagagacggcccc 420
              ||||||||||||||||||||
Sbjct: 125764 atgaggtcagagacggcccc 125783


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,381,103
Number of Sequences: 3902068
Number of extensions: 4381103
Number of successful extensions: 91493
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90979
Number of HSP's gapped (non-prelim): 513
length of query: 625
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 602
effective length of database: 17,143,297,704
effective search space: 10320265217808
effective search space used: 10320265217808
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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