ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21a14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, p... 954 0.0
2gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransf... 839 0.0
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
4emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb... 98 3e-17
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 98 3e-17
6emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E... 98 3e-17
7emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003... 66 1e-07
8emb|AL732404.7| Mouse DNA sequence from clone RP23-177D21 on chr... 44 0.45
9gb|AC165365.3| Mus musculus BAC clone RP23-28N13 from chromosome... 42 1.8
10ref|XM_722360.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 42 1.8
11ref|XM_664595.1| Plasmodium berghei strain ANKA hypothetical pro... 42 1.8
12ref|XM_670572.1| Plasmodium berghei strain ANKA hypothetical pro... 42 1.8
13emb|BX890576.12| Zebrafish DNA sequence from clone DKEY-203O14 i... 42 1.8
14dbj|AK134874.1| Mus musculus adult male olfactory brain cDNA, RI... 42 1.8
15gb|AC169981.3| Mus musculus BAC clone RP24-346E16 from chromosom... 42 1.8
16gb|AC079750.5| Homo sapiens BAC clone RP11-33L3 from 2, complete... 42 1.8
17dbj|AB015474.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 1.8
18emb|AL844883.15| Zebrafish DNA sequence from clone DKEY-3J22 in ... 42 1.8
19gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 42 1.8
20gb|AC005200.1| Homo sapiens chromosome 5, P1 clone 793c5 (LBNL H... 40 7.0
21gb|AC072048.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 7.0
22gb|AC093477.6| Mus musculus chromosome 1, clone RP23-58B6, compl... 40 7.0
23gb|AC124404.4| Mus musculus BAC clone RP24-371M10 from chromosom... 40 7.0
24emb|Z67990.1|CEF02D10 Caenorhabditis elegans Cosmid F02D10, comp... 40 7.0
25gb|AC147472.17| Medicago truncatula clone mth2-24n18, complete s... 40 7.0
26emb|BX927322.12| Zebrafish DNA sequence from clone CH211-101J8 i... 40 7.0
27emb|BX572095.1| Prochlorococcus marinus MIT9313 complete genome;... 40 7.0
28gb|AC163296.2| Mus musculus BAC clone RP23-135F1 from chromosome... 40 7.0
29gb|AC123904.5| Homo sapiens 12 BAC RP11-361A23 (Roswell Park Can... 40 7.0
30dbj|AB236338.1| Clostridium perfringens F4013 plasmid pCPF4013 D... 40 7.0
31gb|AC125482.9| Medicago truncatula clone mth2-15h11, complete se... 40 7.0
32dbj|AB057033.1| Helicobacter pylori cagA gene for cytotoxin asso... 40 7.0
33dbj|AB057031.1| Helicobacter pylori cagA gene for cytotoxin asso... 40 7.0
34dbj|AB057016.1| Helicobacter pylori cagA gene for cytotoxin asso... 40 7.0
35dbj|AB057015.1| Helicobacter pylori cagA gene for cytotoxin asso... 40 7.0
36gb|AC104246.3| Homo sapiens chromosome 8, clone RP11-1073L1, com... 40 7.0
37gb|AC008608.7| Homo sapiens chromosome 5 clone CTB-113I20, compl... 40 7.0
38gb|AF269342.1|AF269342 Staphylococcus epidermidis strain SR1 clo... 40 7.0
39gb|AF269321.1|AF269321 Staphylococcus epidermidis strain SR1 clo... 40 7.0
40gb|AC046174.6| Homo sapiens chromosome 8, clone RP11-621B3, comp... 40 7.0
41gb|AC158573.5| Mus musculus chromosome 8, clone RP23-101F17, com... 40 7.0
42gb|AC012307.8| Homo sapiens BAC clone RP11-574O17 from 2, comple... 40 7.0
43gb|AC153909.5| Mus musculus 6 BAC RP23-190O15 (Roswell Park Canc... 40 7.0
44dbj|AB183825.1| Iris hollandica IhCOMT mRNA for Caffeic acid O-m... 40 7.0
45gb|AC078842.2|AC078842 Homo sapiens chromosome 7 clone RP11-102G... 40 7.0
46gb|AF270232.1|AF270232 Staphylococcus epidermidis strain SR1 clo... 40 7.0
47gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome 40 7.0
48emb|BX470164.10| Zebrafish DNA sequence from clone DKEY-24L11 in... 40 7.0
49emb|AL096821.3|CNS00YVG Human chromosome 14 DNA sequence BAC R-6... 40 7.0
50emb|AL132719.4|CNS01DTH Human chromosome 14 DNA sequence BAC R-1... 40 7.0
51gb|AE015927.1| Clostridium tetani E88, complete genome 40 7.0
52gb|AC002352.1|AC002352 Homo sapiens 12q24 PAC P256D10 complete s... 40 7.0
53gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete g... 40 7.0
54dbj|AP005671.2| Homo sapiens genomic DNA, chromosome 18 clone:CT... 40 7.0
55gb|AC131584.7| Mus musculus chromosome 1, clone RP23-215C21, com... 40 7.0
56emb|CR385047.19| Zebrafish DNA sequence from clone DKEY-221N16 i... 40 7.0
57gb|AC153654.4| Mus musculus BAC clone RP23-457N11 from chromosom... 40 7.0
58emb|AL805968.6| Mouse DNA sequence from clone RP23-424G19 on chr... 40 7.0 
>gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, partial cds
          Length = 983

 Score =  954 bits (481), Expect = 0.0
 Identities = 504/513 (98%), Gaps = 1/513 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   aggacattatgcggtcc-tggcttttatgatagaaataataaaatgaaaatnataaatga 67
           ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 976 aggacattatgcggtccatggcttttatgatagaaataataaaatgaaaatcataaatga 917

                                                                       
Query: 68  gcacgtgagctagcagctcttattcgggacattattcgcnnnnnnngaagtgctcctatt 127
           |||||||||||||||||||||||||||||||||||||||       ||||||||||||||
Sbjct: 916 gcacgtgagctagcagctcttattcgggacattattcgcaaaaaaagaagtgctcctatt 857

                                                                       
Query: 128 cgggactataccactctggtacgtggatgctacttggtgaactcaagagcgtaaaagttg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 cgggactataccactctggtacgtggatgctacttggtgaactcaagagcgtaaaagttg 797

                                                                       
Query: 188 aagaatatgtaggttttcttgatgccaccggtaaatccagcttgtttggctagcctggca 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aagaatatgtaggttttcttgatgccaccggtaaatccagcttgtttggctagcctggca 737

                                                                       
Query: 248 aactccttctccgtcctctgctttgctcccttgaagagcacaaacatgatgatatccaag 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aactccttctccgtcctctgctttgctcccttgaagagcacaaacatgatgatatccaag 677

                                                                       
Query: 308 gtgaatgcatcccgcgctgtgagagacgagtctgggttctccgggaggataccatccacg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gtgaatgcatcccgcgctgtgagagacgagtctgggttctccgggaggataccatccacg 617

                                                                       
Query: 368 acgatcaccttcccgtcttttgggagagcgttgtggcagttgcttagtattttgacgaac 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 acgatcaccttcccgtcttttgggagagcgttgtggcagttgcttagtattttgacgaac 557

                                                                       
Query: 428 tcgtcgtcgttaagcataagcgtgatccactgcaagagaaccgcatctccagtgggtata 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tcgtcgtcgttaagcataagcgtgatccactgcaagagaaccgcatctccagtgggtata 497

                                            
Query: 488 ctctcatacatatctccagccacatgttcgact 520
           |||||||||||||||||||||||||||||||||
Sbjct: 496 ctctcatacatatctccagccacatgttcgact 464
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>gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransferase (HvCOMT) gene,
            complete cds
          Length = 5238

 Score =  839 bits (423), Expect = 0.0
 Identities = 453/463 (97%), Gaps = 2/463 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    agcttatta-ggacattatgcggtcc-tggcttttatgatagaaataataaaatgaaaat 58
            ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4888 agcttattaaggacattatgcggtccatggcttttatgatagaaataataaaatgaaaat 4829

                                                                        
Query: 59   nataaatgagcacgtgagctagcagctcttattcgggacattattcgcnnnnnnngaagt 118
             |||||||||||||||||||||||||||||||||||||||||||||||       |||||
Sbjct: 4828 cataaatgagcacgtgagctagcagctcttattcgggacattattcgcaaaaaaagaagt 4769

                                                                        
Query: 119  gctcctattcgggactataccactctggtacgtggatgctacttggtgaactcaagagcg 178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4768 gctcctattcgggactataccactctggtacgtggatgctacttggtgaactcaagagcg 4709

                                                                        
Query: 179  taaaagttgaagaatatgtaggttttcttgatgccaccggtaaatccagcttgtttggct 238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4708 taaaagttgaagaatatgtaggttttcttgatgccaccggtaaatccagcttgtttggct 4649

                                                                        
Query: 239  agcctggcaaactccttctccgtcctctgctttgctcccttgaagagcacaaacatgatg 298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4648 agcctggcaaactccttctccgtcctctgctttgctcccttgaagagcacaaacatgatg 4589

                                                                        
Query: 299  atatccaaggtgaatgcatcccgcgctgtgagagacgagtctgggttctccgggaggata 358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4588 atatccaaggtgaatgcatcccgcgctgtgagagacgagtctgggttctccgggaggata 4529

                                                                        
Query: 359  ccatccacgacgatcaccttcccgtcttttgggagagcgttgtggcagttgcttagtatt 418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4528 ccatccacgacgatcaccttcccgtcttttgggagagcgttgtggcagttgcttagtatt 4469

                                                       
Query: 419  ttgacgaactcgtcgtcgttaagcataagcgtgatccactgca 461
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4468 ttgacgaactcgtcgtcgttaagcataagcgtgatccactgca 4426



 Score =  127 bits (64), Expect = 4e-26
 Identities = 64/64 (100%)
 Strand = Plus / Minus

                                                                        
Query: 457  ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3910 ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 3851

                
Query: 517  gact 520
            ||||
Sbjct: 3850 gact 3847
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 130/157 (82%)
 Strand = Plus / Minus

                                                                           
Query: 165     tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 224
               ||||||||||||| || ||||| ||||||||||||||   |   | |  ||||||||| |
Sbjct: 5374724 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 5374665

                                                                           
Query: 225     cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 284
               ||||||  ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 5374664 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 5374605

                                                    
Query: 285     gcacaaacatgatgatatccaaggtgaatgcatcccg 321
               | ||||||||||| ||||||| |||||||| ||||||
Sbjct: 5374604 ggacaaacatgatcatatccatggtgaatgaatcccg 5374568



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 135/169 (79%)
 Strand = Plus / Minus

                                                                           
Query: 156     gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 215
               |||||||  |||||||||| ||||| ||||| ||||||||||||||   |  || |  ||
Sbjct: 5173415 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 5173356

                                                                           
Query: 216     cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 275
               ||||||| ||||  |  ||||| ||| | |||||||| | ||| ||||| |||||  || 
Sbjct: 5173355 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 5173296

                                                                
Query: 276     ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 324
               |||||||||| ||||||| ||| ||||||| |||||||| |||| ||||
Sbjct: 5173295 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 5173247



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                           
Query: 457     ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 516
               |||||| ||||  ||||||||| |||| | ||||||||||||||||||||| | ||||||
Sbjct: 5172597 ctgcaaaagaattgcatctccattgggcacactctcatacatatctccagctatatgttc 5172538
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>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 105645

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 130/157 (82%)
 Strand = Plus / Minus

                                                                         
Query: 165   tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 224
             ||||||||||||| || ||||| ||||||||||||||   |   | |  ||||||||| |
Sbjct: 46791 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 46732

                                                                         
Query: 225   cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 284
             ||||||  ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 46731 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 46672

                                                  
Query: 285   gcacaaacatgatgatatccaaggtgaatgcatcccg 321
             | ||||||||||| ||||||| |||||||| ||||||
Sbjct: 46671 ggacaaacatgatcatatccatggtgaatgaatcccg 46635
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 130/157 (82%)
 Strand = Plus / Minus

                                                                           
Query: 165     tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 224
               ||||||||||||| || ||||| ||||||||||||||   |   | |  ||||||||| |
Sbjct: 5374713 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 5374654

                                                                           
Query: 225     cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 284
               ||||||  ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 5374653 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 5374594

                                                    
Query: 285     gcacaaacatgatgatatccaaggtgaatgcatcccg 321
               | ||||||||||| ||||||| |||||||| ||||||
Sbjct: 5374593 ggacaaacatgatcatatccatggtgaatgaatcccg 5374557



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 135/169 (79%)
 Strand = Plus / Minus

                                                                           
Query: 156     gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 215
               |||||||  |||||||||| ||||| ||||| ||||||||||||||   |  || |  ||
Sbjct: 5173397 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 5173338

                                                                           
Query: 216     cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 275
               ||||||| ||||  |  ||||| ||| | |||||||| | ||| ||||| |||||  || 
Sbjct: 5173337 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 5173278

                                                                
Query: 276     ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 324
               |||||||||| ||||||| ||| ||||||| |||||||| |||| ||||
Sbjct: 5173277 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 5173229



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                           
Query: 457     ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 516
               |||||| ||||  ||||||||| |||| | ||||||||||||||||||||| | ||||||
Sbjct: 5172579 ctgcaaaagaattgcatctccattgggcacactctcatacatatctccagctatatgttc 5172520
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>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 141841

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 130/157 (82%)
 Strand = Plus / Plus

                                                                         
Query: 165   tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 224
             ||||||||||||| || ||||| ||||||||||||||   |   | |  ||||||||| |
Sbjct: 91084 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 91143

                                                                         
Query: 225   cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 284
             ||||||  ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 91144 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 91203

                                                  
Query: 285   gcacaaacatgatgatatccaaggtgaatgcatcccg 321
             | ||||||||||| ||||||| |||||||| ||||||
Sbjct: 91204 ggacaaacatgatcatatccatggtgaatgaatcccg 91240
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>emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003_A04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 124959

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 135/169 (79%)
 Strand = Plus / Plus

                                                                         
Query: 156   gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 215
             |||||||  |||||||||| ||||| ||||| ||||||||||||||   |  || |  ||
Sbjct: 90184 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 90243

                                                                         
Query: 216   cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 275
             ||||||| ||||  |  ||||| ||| | |||||||| | ||| ||||| |||||  || 
Sbjct: 90244 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 90303

                                                              
Query: 276   ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 324
             |||||||||| ||||||| ||| ||||||| |||||||| |||| ||||
Sbjct: 90304 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 90352



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                         
Query: 457   ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 516
             |||||| ||||  ||||||||| |||| | ||||||||||||||||||||| | ||||||
Sbjct: 91002 ctgcaaaagaattgcatctccattgggcacactctcatacatatctccagctatatgttc 91061
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>emb|AL732404.7| Mouse DNA sequence from clone RP23-177D21 on chromosome 2, complete
             sequence
          Length = 220275

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 30    ttttatgatagaaataataaaa 51
             ||||||||||||||||||||||
Sbjct: 96149 ttttatgatagaaataataaaa 96170
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>gb|AC165365.3| Mus musculus BAC clone RP23-28N13 from chromosome 6, complete sequence
          Length = 238262

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 491    tcatacatatctccagccacatgtt 515
              |||||||||| ||||||||||||||
Sbjct: 237760 tcatacatatatccagccacatgtt 237784
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>ref|XM_722360.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06739)
           partial mRNA
          Length = 1143

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 41  aaataataaaatgaaaatnataaatgag 68
           |||||||||||||||||  |||||||||
Sbjct: 702 aaataataaaatgaaaagtataaatgag 729
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>ref|XM_664595.1| Plasmodium berghei strain ANKA hypothetical protein (PB108243.00.0)
           partial mRNA
          Length = 634

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 30  ttttatgatagaaataataaaatgaaaat 58
           |||||||| ||| ||||||||||||||||
Sbjct: 111 ttttatgaaagatataataaaatgaaaat 83
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>ref|XM_670572.1| Plasmodium berghei strain ANKA hypothetical protein (PB000547.00.0)
            partial mRNA
          Length = 2673

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 41   aaataataaaatgaaaatnataaatgag 68
            |||||||||||||||||  |||||||||
Sbjct: 1683 aaataataaaatgaaaaatataaatgag 1710
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>emb|BX890576.12| Zebrafish DNA sequence from clone DKEY-203O14 in linkage group 18,
             complete sequence
          Length = 172599

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    gaaataataaaatgaaaatnataa 63
             ||||||||||||||||||| ||||
Sbjct: 96369 gaaataataaaatgaaaataataa 96392



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    gaaataataaaatgaaaatnataa 63
             ||||||||||||||||||| ||||
Sbjct: 91914 gaaataataaaatgaaaataataa 91937
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>dbj|AK134874.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
            enriched library, clone:6430501C11
            product:unclassifiable, full insert sequence
          Length = 1789

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 491  tcatacatatctccagccacatgtt 515
            |||||||||| ||||||||||||||
Sbjct: 1024 tcatacatatatccagccacatgtt 1048
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>gb|AC169981.3| Mus musculus BAC clone RP24-346E16 from chromosome 6, complete sequence
          Length = 150872

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 491   tcatacatatctccagccacatgtt 515
             |||||||||| ||||||||||||||
Sbjct: 45951 tcatacatatatccagccacatgtt 45975
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>gb|AC079750.5| Homo sapiens BAC clone RP11-33L3 from 2, complete sequence
          Length = 103089

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    gcttttatgatagaaataata 48
             |||||||||||||||||||||
Sbjct: 46170 gcttttatgatagaaataata 46150
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>dbj|AB015474.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLM24
          Length = 87487

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 31   tttatgatagaaataataaaa 51
            |||||||||||||||||||||
Sbjct: 9619 tttatgatagaaataataaaa 9639
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>emb|AL844883.15| Zebrafish DNA sequence from clone DKEY-3J22 in linkage group 18,
             complete sequence
          Length = 189984

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    gaaataataaaatgaaaatnataa 63
             ||||||||||||||||||| ||||
Sbjct: 93346 gaaataataaaatgaaaataataa 93369



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    gaaataataaaatgaaaatnataa 63
             ||||||||||||||||||| ||||
Sbjct: 88900 gaaataataaaatgaaaataataa 88923



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    gaaataataaaatgaaaatnataa 63
             ||||||||||||||||||| ||||
Sbjct: 84424 gaaataataaaatgaaaataataa 84447
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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 183    agttgaagaatatgtaggttttctt 207
              |||||||||| ||||||||||||||
Sbjct: 313473 agttgaagaaaatgtaggttttctt 313449
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>gb|AC005200.1| Homo sapiens chromosome 5, P1 clone 793c5 (LBNL H57), complete sequence
          Length = 79305

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    ttttatgatagaaataataa 49
             ||||||||||||||||||||
Sbjct: 13493 ttttatgatagaaataataa 13512
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>gb|AC072048.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-189E15, complete
              sequence
          Length = 208661

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     agaaataataaaatgaaaat 58
              ||||||||||||||||||||
Sbjct: 130171 agaaataataaaatgaaaat 130152
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>gb|AC093477.6| Mus musculus chromosome 1, clone RP23-58B6, complete sequence
          Length = 225321

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 278    ttgaagagcacaaacatgat 297
              ||||||||||||||||||||
Sbjct: 180691 ttgaagagcacaaacatgat 180672
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>gb|AC124404.4| Mus musculus BAC clone RP24-371M10 from chromosome 12, complete
             sequence
          Length = 150375

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    tagaaataataaaatgaaaa 57
             ||||||||||||||||||||
Sbjct: 54063 tagaaataataaaatgaaaa 54044
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>emb|Z67990.1|CEF02D10 Caenorhabditis elegans Cosmid F02D10, complete sequence
          Length = 25359

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 424   gaactcgtcgtcgttaagca 443
             ||||||||||||||||||||
Sbjct: 23437 gaactcgtcgtcgttaagca 23418
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>gb|AC147472.17| Medicago truncatula clone mth2-24n18, complete sequence
          Length = 133272

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 44    taataaaatgaaaatnataaatg 66
             ||||||||||||||| |||||||
Sbjct: 91778 taataaaatgaaaataataaatg 91800
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>emb|BX927322.12| Zebrafish DNA sequence from clone CH211-101J8 in linkage group 21,
            complete sequence
          Length = 110730

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   atagaaataataaaatgaaa 56
            ||||||||||||||||||||
Sbjct: 6531 atagaaataataaaatgaaa 6550
to top
>emb|BX572095.1| Prochlorococcus marinus MIT9313 complete genome; segment 1/7
          Length = 349391

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 243    tggcaaactccttctccgtc 262
              ||||||||||||||||||||
Sbjct: 340353 tggcaaactccttctccgtc 340372
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>gb|AC163296.2| Mus musculus BAC clone RP23-135F1 from chromosome 12, complete sequence
          Length = 226483

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    tagaaataataaaatgaaaa 57
             ||||||||||||||||||||
Sbjct: 23725 tagaaataataaaatgaaaa 23706
to top
>gb|AC123904.5| Homo sapiens 12 BAC RP11-361A23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 125400

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    aaacatgatgatatccaagg 308
              ||||||||||||||||||||
Sbjct: 120643 aaacatgatgatatccaagg 120624
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>dbj|AB236338.1| Clostridium perfringens F4013 plasmid pCPF4013 DNA, partial sequence
          Length = 32855

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 39    agaaataataaaatgaaaatnataaat 65
             |||||||||||||| ||||| ||||||
Sbjct: 19113 agaaataataaaattaaaataataaat 19087
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>gb|AC125482.9| Medicago truncatula clone mth2-15h11, complete sequence
          Length = 129658

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    acaaacatgatgatatccaa 306
              ||||||||||||||||||||
Sbjct: 111959 acaaacatgatgatatccaa 111978
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>dbj|AB057033.1| Helicobacter pylori cagA gene for cytotoxin associated protein
           CagA, partial cds, 3' region, strain:JapanK101
          Length = 734

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 385 ttttgggagagcgttgtggc 404
           ||||||||||||||||||||
Sbjct: 137 ttttgggagagcgttgtggc 118
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>dbj|AB057031.1| Helicobacter pylori cagA gene for cytotoxin associated protein
           CagA, partial cds, 3' region, strain:JapanK89
          Length = 734

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 385 ttttgggagagcgttgtggc 404
           ||||||||||||||||||||
Sbjct: 137 ttttgggagagcgttgtggc 118
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>dbj|AB057016.1| Helicobacter pylori cagA gene for cytotoxin associated protein
           CagA, partial cds, 3' region, strain:JapanK41
          Length = 728

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 385 ttttgggagagcgttgtggc 404
           ||||||||||||||||||||
Sbjct: 137 ttttgggagagcgttgtggc 118
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>dbj|AB057015.1| Helicobacter pylori cagA gene for cytotoxin associated protein
           CagA, partial cds, 3' region, strain:JapanK35
          Length = 734

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 385 ttttgggagagcgttgtggc 404
           ||||||||||||||||||||
Sbjct: 137 ttttgggagagcgttgtggc 118
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>gb|AC104246.3| Homo sapiens chromosome 8, clone RP11-1073L1, complete sequence
          Length = 170284

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     gatagaaataataaaatgaa 55
              ||||||||||||||||||||
Sbjct: 152801 gatagaaataataaaatgaa 152820
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>gb|AC008608.7| Homo sapiens chromosome 5 clone CTB-113I20, complete sequence
          Length = 160672

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    ttttatgatagaaataataa 49
             ||||||||||||||||||||
Sbjct: 23672 ttttatgatagaaataataa 23691
to top
>gb|AF269342.1|AF269342 Staphylococcus epidermidis strain SR1 clone step.1002d03 genomic
           sequence
          Length = 3734

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 aaaagttgaagaatatgtag 199
           ||||||||||||||||||||
Sbjct: 177 aaaagttgaagaatatgtag 158
to top
>gb|AF269321.1|AF269321 Staphylococcus epidermidis strain SR1 clone step.1002a08 genomic
            sequence
          Length = 3383

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  aaaagttgaagaatatgtag 199
            ||||||||||||||||||||
Sbjct: 2238 aaaagttgaagaatatgtag 2257
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>gb|AC046174.6| Homo sapiens chromosome 8, clone RP11-621B3, complete sequence
          Length = 161619

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    gatagaaataataaaatgaa 55
             ||||||||||||||||||||
Sbjct: 41177 gatagaaataataaaatgaa 41196
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>gb|AC158573.5| Mus musculus chromosome 8, clone RP23-101F17, complete sequence
          Length = 204567

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     agaaataataaaatgaaaat 58
              ||||||||||||||||||||
Sbjct: 124180 agaaataataaaatgaaaat 124199
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>gb|AC012307.8| Homo sapiens BAC clone RP11-574O17 from 2, complete sequence
          Length = 145918

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    agaaataataaaatgaaaat 58
             ||||||||||||||||||||
Sbjct: 79570 agaaataataaaatgaaaat 79589
to top
>gb|AC153909.5| Mus musculus 6 BAC RP23-190O15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 226538

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     agaaataataaaatgaaaat 58
              ||||||||||||||||||||
Sbjct: 208362 agaaataataaaatgaaaat 208381
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>dbj|AB183825.1| Iris hollandica IhCOMT mRNA for Caffeic acid O-methyltransferase,
           complete cds
          Length = 1303

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 470 gcatctccagtgggtatactctcatacatatctcca 505
           ||||||||| |||| | ||||||| |||||||||||
Sbjct: 788 gcatctccactgggaacactctcaaacatatctcca 753
to top
>gb|AC078842.2|AC078842 Homo sapiens chromosome 7 clone RP11-102G17, complete sequence
          Length = 173844

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 35   tgatagaaataataaaatgaaaat 58
            ||||| ||||||||||||||||||
Sbjct: 3084 tgataaaaataataaaatgaaaat 3061
to top
>gb|AF270232.1|AF270232 Staphylococcus epidermidis strain SR1 clone step.1055e11 genomic
            sequence
          Length = 2995

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 180  aaaagttgaagaatatgtag 199
            ||||||||||||||||||||
Sbjct: 1549 aaaagttgaagaatatgtag 1530
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>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    aaaagttgaagaatatgtag 199
              ||||||||||||||||||||
Sbjct: 226670 aaaagttgaagaatatgtag 226689
to top
>emb|BX470164.10| Zebrafish DNA sequence from clone DKEY-24L11 in linkage group 18,
              complete sequence
          Length = 248419

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    cggtaaatccagcttgtttg 235
              ||||||||||||||||||||
Sbjct: 147510 cggtaaatccagcttgtttg 147491
to top
>emb|AL096821.3|CNS00YVG Human chromosome 14 DNA sequence BAC R-677J5 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 209111

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   tagaaataataaaatgaaaa 57
            ||||||||||||||||||||
Sbjct: 1709 tagaaataataaaatgaaaa 1728
to top
>emb|AL132719.4|CNS01DTH Human chromosome 14 DNA sequence BAC R-1082A3 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171505

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     tagaaataataaaatgaaaa 57
              ||||||||||||||||||||
Sbjct: 153269 tagaaataataaaatgaaaa 153288
to top
>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     atgatagaaataataaaatg 53
              ||||||||||||||||||||
Sbjct: 940104 atgatagaaataataaaatg 940123
to top
>gb|AC002352.1|AC002352 Homo sapiens 12q24 PAC P256D10 complete sequence
          Length = 162405

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   ggctagcctggcaaactcct 254
             ||||||||||||||||||||
Sbjct: 87830 ggctagcctggcaaactcct 87811
to top
>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    aaaagttgaagaatatgtag 199
              ||||||||||||||||||||
Sbjct: 342005 aaaagttgaagaatatgtag 342024
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>dbj|AP005671.2| Homo sapiens genomic DNA, chromosome 18 clone:CTD-3096M3, complete
             sequence
          Length = 86000

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   tcccttgaagagcacaaaca 293
             ||||||||||||||||||||
Sbjct: 62557 tcccttgaagagcacaaaca 62538
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>gb|AC131584.7| Mus musculus chromosome 1, clone RP23-215C21, complete sequence
          Length = 197346

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   ttgaagagcacaaacatgat 297
             ||||||||||||||||||||
Sbjct: 79901 ttgaagagcacaaacatgat 79882
to top
>emb|CR385047.19| Zebrafish DNA sequence from clone DKEY-221N16 in linkage group 18,
              complete sequence
          Length = 193827

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    cggtaaatccagcttgtttg 235
              ||||||||||||||||||||
Sbjct: 173244 cggtaaatccagcttgtttg 173225
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>gb|AC153654.4| Mus musculus BAC clone RP23-457N11 from chromosome 12, complete sequence
          Length = 193547

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     tagaaataataaaatgaaaa 57
              ||||||||||||||||||||
Sbjct: 143301 tagaaataataaaatgaaaa 143282
to top
>emb|AL805968.6| Mouse DNA sequence from clone RP23-424G19 on chromosome 4, complete
              sequence
          Length = 171320

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     atagaaataataaaatgaaa 56
              ||||||||||||||||||||
Sbjct: 159096 atagaaataataaaatgaaa 159077


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,139,533
Number of Sequences: 3902068
Number of extensions: 4139533
Number of successful extensions: 91445
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91190
Number of HSP's gapped (non-prelim): 251
length of query: 520
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 497
effective length of database: 17,143,297,704
effective search space: 8520218958888
effective search space used: 8520218958888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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