>gb|BT017884.1| Zea mays clone EL01N0514G01.c mRNA sequence
          Length = 627

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 362 tgatcttcctgtcaagctcatccttcttagcccc 395
           |||||||||| |||||||| ||||||||||||||
Sbjct: 361 tgatcttcctctcaagctcgtccttcttagcccc 328

>gb|AY104013.1| Zea mays PCO085678 mRNA sequence
          Length = 736

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 362 tgatcttcctgtcaagctcatccttcttagcccc 395
           |||||||||| |||||||| ||||||||||||||
Sbjct: 425 tgatcttcctctcaagctcgtccttcttagcccc 392

>ref|NM_185032.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 745

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 335 aggatcaggacgatgagatgaacgtcttgatcttcctgtcaagctcatccttcttagccc 394
           ||||| |||| ||||| |||||| | ||||  ||||| || || |||||||||||||| |
Sbjct: 507 aggatgaggaggatgaaatgaacatgttgactttcctctccagttcatccttcttagcac 448

                        
Query: 395 cgaccacgcgact 407
           | |||||||||||
Sbjct: 447 caaccacgcgact 435

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                            
Query: 335      aggatcaggacgatgagatgaacgtcttgatcttcctgtcaagctcatccttcttagccc 394
                ||||| |||| ||||| |||||| | ||||  ||||| || || |||||||||||||| |
Sbjct: 33087731 aggatgaggaggatgaaatgaacatgttgactttcctctccagttcatccttcttagcac 33087790

                             
Query: 395      cgaccacgcgact 407
                | |||||||||||
Sbjct: 33087791 caaccacgcgact 33087803

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                            
Query: 335      aggatcaggacgatgagatgaacgtcttgatcttcctgtcaagctcatccttcttagccc 394
                ||||| |||| ||||| |||||| | ||||  ||||| || || |||||||||||||| |
Sbjct: 33178241 aggatgaggaggatgaaatgaacatgttgactttcctctccagttcatccttcttagcac 33178300

                             
Query: 395      cgaccacgcgact 407
                | |||||||||||
Sbjct: 33178301 caaccacgcgact 33178313

>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete
             sequence
          Length = 139823

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                         
Query: 335   aggatcaggacgatgagatgaacgtcttgatcttcctgtcaagctcatccttcttagccc 394
             ||||| |||| ||||| |||||| | ||||  ||||| || || |||||||||||||| |
Sbjct: 35577 aggatgaggaggatgaaatgaacatgttgactttcctctccagttcatccttcttagcac 35518

                          
Query: 395   cgaccacgcgact 407
             | |||||||||||
Sbjct: 35517 caaccacgcgact 35505

>dbj|AK062383.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B11, full
           insert sequence
          Length = 701

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 335 aggatcaggacgatgagatgaacgtcttgatcttcctgtcaagctcatccttcttagccc 394
           ||||| |||| ||||| |||||| | ||||  ||||| || || |||||||||||||| |
Sbjct: 511 aggatgaggaggatgaaatgaacatgttgactttcctctccagttcatccttcttagcac 452

                        
Query: 395 cgaccacgcgact 407
           | |||||||||||
Sbjct: 451 caaccacgcgact 439

>emb|AL603913.14| Mouse DNA sequence from clone RP23-103H9 on chromosome 11 Contains the
             gene for a novel protein (3732413I11Rik), a novel gene
             (4930597A21Rik), the 5' end of the Ebf1 gene for early
             B-cell factor 1, a novel gene and a CpG island, complete
             sequence
          Length = 215524

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 211   ggattttgcagcattttagaag 232
             ||||||||||||||||||||||
Sbjct: 99922 ggattttgcagcattttagaag 99901

>ref|XM_747823.1| Aspergillus fumigatus Af293 MFS multidrug transporter (Afu1g15490)
           partial mRNA
          Length = 1809

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 127 caaggtgacagatgacgatca 147
           |||||||||||||||||||||
Sbjct: 168 caaggtgacagatgacgatca 188

>gb|AC092836.4| Homo sapiens BAC clone RP11-50B16 from 2, complete sequence
          Length = 165768

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 259    accataggagcctcttgccactggg 283
              |||||||| ||||||||||||||||
Sbjct: 127895 accataggtgcctcttgccactggg 127919

>gb|AC125180.6| Mus musculus BAC clone RP23-322K1 from chromosome 14, complete sequence
          Length = 200560

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 154   ccagagttacacatttacacgatc 177
             ||||||| ||||||||||||||||
Sbjct: 82506 ccagagtcacacatttacacgatc 82483

>ref|NM_009925.2| Mus musculus procollagen, type X, alpha 1 (Col10a1), mRNA
          Length = 4964

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 366  cttcctgtcaagctcatcct 385
            ||||||||||||||||||||
Sbjct: 2741 cttcctgtcaagctcatcct 2760

>gb|AC021709.12| Mus musculus chromosome 10, clone RP23-194I3, complete sequence
          Length = 319367

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   cttcctgtcaagctcatcct 385
             ||||||||||||||||||||
Sbjct: 69717 cttcctgtcaagctcatcct 69698

>gb|AC149474.15| Medicago truncatula clone mth2-122l24, complete sequence
          Length = 129008

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     tccagaataaaaacatgaat 88
              ||||||||||||||||||||
Sbjct: 104488 tccagaataaaaacatgaat 104469

>emb|AL513549.13| Human DNA sequence from clone RP11-424H23 on chromosome 6 Contains part
             of a novel gene (FLJ20342), complete sequence
          Length = 131374

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   atcacagtaacttgattgcc 126
             ||||||||||||||||||||
Sbjct: 22916 atcacagtaacttgattgcc 22935

>emb|Z21610.1|MMA1TXCOL M.musculus encoding alpha-1 type-x collagen
          Length = 3422

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 366  cttcctgtcaagctcatcct 385
            ||||||||||||||||||||
Sbjct: 2342 cttcctgtcaagctcatcct 2361

>emb|X67348.1|MMCOL10A Mus musculus COL10A1 gene for alpha-1 collagen type X
          Length = 9331

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 366  cttcctgtcaagctcatcct 385
            ||||||||||||||||||||
Sbjct: 7108 cttcctgtcaagctcatcct 7127

>emb|X65121.1|MMCOL10A1 M.musculus COL10A1 gene for alpha 1 (X) collagen
          Length = 2215

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 366  cttcctgtcaagctcatcct 385
            ||||||||||||||||||||
Sbjct: 1938 cttcctgtcaagctcatcct 1957

>emb|BX322574.10| Zebrafish DNA sequence from clone DKEY-35I15 in linkage group 3,
             complete sequence
          Length = 150999

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    agtgtcgttttttcagtaac 55
             ||||||||||||||||||||
Sbjct: 13112 agtgtcgttttttcagtaac 13093

>gb|AC004086.14| Homo sapiens 12 PAC RP3-329E11 (Roswell Park Cancer Institute Human
            Bac Library) complete sequence
          Length = 94508

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 211  ggattttgcagcattttaga 230
            ||||||||||||||||||||
Sbjct: 6430 ggattttgcagcattttaga 6411

>gb|AC154563.2| Mus musculus BAC clone RP23-401E22 from chromosome 14, complete
            sequence
          Length = 206798

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 154  ccagagttacacatttacacgatc 177
            ||||||| ||||||||||||||||
Sbjct: 9002 ccagagtcacacatttacacgatc 9025

>gb|AC154749.2| Mus musculus BAC clone RP24-399C21 from 17, complete sequence
          Length = 155483

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    tttttcagtaacaaactaca 63
             ||||||||||||||||||||
Sbjct: 89845 tttttcagtaacaaactaca 89864

>gb|AC153960.3| Mus musculus 10 BAC RP24-210O10 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 162022

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 366    cttcctgtcaagctcatcct 385
              ||||||||||||||||||||
Sbjct: 121212 cttcctgtcaagctcatcct 121193

>emb|X88892.1|CJVPI4YEL C.jacchus intron 4 of visual pigment gene (yellow allele)
          Length = 1821

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 265 ggagcctcttgccactggga 284
           ||||||||||||||||||||
Sbjct: 854 ggagcctcttgccactggga 873

>gb|AY142333.1|AY142332S2 Callithrix geoffroyi 556nm X-linked opsin gene, exon 4
          Length = 1322

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 265  ggagcctcttgccactggga 284
            ||||||||||||||||||||
Sbjct: 1020 ggagcctcttgccactggga 1039


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,204,957
Number of Sequences: 3902068
Number of extensions: 3204957
Number of successful extensions: 59227
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59149
Number of HSP's gapped (non-prelim): 78
length of query: 408
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 386
effective length of database: 17,147,199,772
effective search space: 6618819111992
effective search space used: 6618819111992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)