>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3|
          Length = 623

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 49  EQLSRLQQPHAAXPPRSQHNKVHTAHRSHT 138
           +Q S+LQ PH+  PP  QH + H  H+  T
Sbjct: 406 QQHSQLQPPHSQHPPPHQHIQHHPNHQHQT 435

>NBR1_PONPY (Q5RC94) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
           protein)
          Length = 894

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -1

Query: 362 LSEMGFDDRETNKELLAKNXGSIKRAVMDLIAREKKD 252
           L EMGF DR+ N +LL K+  +I + V +L+     D
Sbjct: 852 LFEMGFCDRQLNLQLLKKHNYNILQVVTELLQLNNND 888

>NBR1_RAT (Q501R9) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein)
          Length = 983

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 362  LSEMGFDDRETNKELLAKNXGSIKRAVMDLIAREKKD 252
            L EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 941  LFEMGFCDRQLNLRLLRKHNHNILQVVTELLQVNNND 977

>SIN1_SCHPO (Q9P7Y9) Stress-activated map kinase-interacting protein 1|
           (SAPK-interacting protein 1)
          Length = 665

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
 Frame = +1

Query: 58  SRLQQPHAAXPPRSQH--------NKVHTAHRSHTNKSSQXFIGKLRDTLS 186
           +++++  AA P +S+H        NK H  H S T+  SQ     ++DTL+
Sbjct: 386 AQIKENQAAYPFKSKHPTSIPEANNKTHIRHTSSTSSQSQKQAQDVKDTLN 436

>NBR1_HUMAN (Q14596) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein) (Membrane component, chromosome 17, surface
            marker 2) (1A1-3B)
          Length = 966

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 362  LSEMGFDDRETNKELLAKNXGSIKRAVMDLIAREKKD 252
            L EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 924  LFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLNNND 960

>NBR1_MOUSE (P97432) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein) (Membrane component, chromosome 17, surface
            marker 2)
          Length = 988

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 362  LSEMGFDDRETNKELLAKNXGSIKRAVMDLIAREKKD 252
            L EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 946  LFEMGFCDRQLNLRLLRKHNYNILQVVTELLQVNNND 982

>KNOX3_MAIZE (P56661) Homeobox protein knotted-1-like 3 (Fragment)|
          Length = 88

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 344 DDRETNKELLAKNXGSIKRAVMDLIAREKKDK 249
           DD+E  K+LL K  G +     +L  + KKDK
Sbjct: 1   DDKELKKQLLRKYSGCLGNLRKELCKKRKKDK 32

>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
 Frame = +1

Query: 49  EQLSRLQQPHAAXPPRSQ--HNKVHTAHRSHTNKSSQXFIGKL-----RDTLSRYLGIY 204
           + +S+ QQP +  PP+ Q    K   +    + +S + FIG L      D L  Y G Y
Sbjct: 124 QTMSQFQQPSSQSPPQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKY 182

>UN13B_HUMAN (O14795) Unc-13 homolog B (Munc13-2) (munc13)|
          Length = 1591

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 43  GTEQLSRLQQPHAAXPPRSQHNKVHTAHRSHT 138
           G+ QLS L Q H       + + +H+ H SH+
Sbjct: 270 GSSQLSELDQYHEQDDDHRETDSIHSCHSSHS 301

>PMEU1_LYCES (Q43143) Pectinesterase U1 precursor (EC 3.1.1.11) (Pectin|
           methylesterase) (PE)
          Length = 583

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 133 DFCVRCELYYVVTVVGQLRVVAVIGXVA 50
           DFC R +  Y+  V   L V AVIG VA
Sbjct: 13  DFCKRKKKIYLAIVASVLLVAAVIGVVA 40

>FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3|
          Length = 622

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 49  EQLSRLQQPHAAXPPRSQHNKVHTAHRSHT 138
           +Q S+LQ PH   P   QH + H  H+  T
Sbjct: 405 QQHSQLQSPHPQHPSPHQHIQHHPNHQHQT 434


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,288,411
Number of Sequences: 219361
Number of extensions: 695308
Number of successful extensions: 1613
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1613
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)