Clone Name | rbasd21a04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK061485.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A02, full insert sequence Length = 1356 Score = 194 bits (98), Expect = 2e-46 Identities = 177/202 (87%), Gaps = 1/202 (0%) Strand = Plus / Minus Query: 348 ctgcttgcgcaggcccatccgagatttggcatattctaaacgcatgccctcgccagatga 407 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct: 977 ctgcttacgcaggcccatccgagatttggcatattctaaacgcatcccctcgccagttga 918 Query: 408 tgaatgtagaatagctccttggagacgattcagggctttcagttgaactgtgatcgtcct 467 ||||| | |||| ||||||||||||| || | ||| |||||||||||||| |||| Sbjct: 917 tgaatacaaaataactccttggagacggtttatggc-ttcagttgaactgtccatatcct 859 Query: 468 tgaaatcaacaaatgcaacaggtgctccgaacttgttttgcatcttcagctttatgaatc 527 ||||||| ||||||||||| || ||||| ||||||||||||||||||| ||||||||||| Sbjct: 858 tgaaatccacaaatgcaactggagctccaaacttgttttgcatcttcacctttatgaatc 799 Query: 528 cctcacaaccagagaaaacatc 549 || | |||| ||||||||||| Sbjct: 798 ccgcgcaacttgagaaaacatc 777
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 89.7 bits (45), Expect = 1e-14 Identities = 60/65 (92%) Strand = Plus / Minus Query: 465 ccttgaaatcaacaaatgcaacaggtgctccgaacttgttttgcatcttcagctttatga 524 |||||||||| ||||||||||| || ||||| ||||||||||||||||||| |||||||| Sbjct: 28289808 ccttgaaatccacaaatgcaactggagctccaaacttgttttgcatcttcacctttatga 28289749 Query: 525 atccc 529 ||||| Sbjct: 28289748 atccc 28289744 Score = 65.9 bits (33), Expect = 1e-07 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 382 tctaaacgcatgccctcgccagatgatgaatgtagaatagctccttggagacgattcagg 441 ||||||||||| |||||||||| |||||||| | |||| ||||||||||||| || | | Sbjct: 28290595 tctaaacgcatcccctcgccagttgatgaatacaaaataactccttggagacggtttatg 28290536 Query: 442 gctttcagttgaactgt 458 || |||||||||||||| Sbjct: 28290535 gc-ttcagttgaactgt 28290520 Score = 60.0 bits (30), Expect = 9e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 348 ctgcttgcgcaggcccatccgagatttggcatat 381 |||||| ||||||||||||||||||||||||||| Sbjct: 28290790 ctgcttacgcaggcccatccgagatttggcatat 28290757
>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0661G04 Length = 157292 Score = 89.7 bits (45), Expect = 1e-14 Identities = 60/65 (92%) Strand = Plus / Minus Query: 465 ccttgaaatcaacaaatgcaacaggtgctccgaacttgttttgcatcttcagctttatga 524 |||||||||| ||||||||||| || ||||| ||||||||||||||||||| |||||||| Sbjct: 2386 ccttgaaatccacaaatgcaactggagctccaaacttgttttgcatcttcacctttatga 2327 Query: 525 atccc 529 ||||| Sbjct: 2326 atccc 2322 Score = 65.9 bits (33), Expect = 1e-07 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 382 tctaaacgcatgccctcgccagatgatgaatgtagaatagctccttggagacgattcagg 441 ||||||||||| |||||||||| |||||||| | |||| ||||||||||||| || | | Sbjct: 3173 tctaaacgcatcccctcgccagttgatgaatacaaaataactccttggagacggtttatg 3114 Query: 442 gctttcagttgaactgt 458 || |||||||||||||| Sbjct: 3113 gc-ttcagttgaactgt 3098 Score = 60.0 bits (30), Expect = 9e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 348 ctgcttgcgcaggcccatccgagatttggcatat 381 |||||| ||||||||||||||||||||||||||| Sbjct: 3368 ctgcttacgcaggcccatccgagatttggcatat 3335
>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0623A10 Length = 156517 Score = 89.7 bits (45), Expect = 1e-14 Identities = 60/65 (92%) Strand = Plus / Minus Query: 465 ccttgaaatcaacaaatgcaacaggtgctccgaacttgttttgcatcttcagctttatga 524 |||||||||| ||||||||||| || ||||| ||||||||||||||||||| |||||||| Sbjct: 87837 ccttgaaatccacaaatgcaactggagctccaaacttgttttgcatcttcacctttatga 87778 Query: 525 atccc 529 ||||| Sbjct: 87777 atccc 87773 Score = 65.9 bits (33), Expect = 1e-07 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 382 tctaaacgcatgccctcgccagatgatgaatgtagaatagctccttggagacgattcagg 441 ||||||||||| |||||||||| |||||||| | |||| ||||||||||||| || | | Sbjct: 88624 tctaaacgcatcccctcgccagttgatgaatacaaaataactccttggagacggtttatg 88565 Query: 442 gctttcagttgaactgt 458 || |||||||||||||| Sbjct: 88564 gc-ttcagttgaactgt 88549 Score = 60.0 bits (30), Expect = 9e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 348 ctgcttgcgcaggcccatccgagatttggcatat 381 |||||| ||||||||||||||||||||||||||| Sbjct: 88819 ctgcttacgcaggcccatccgagatttggcatat 88786
>ref|NM_180036.1| Arabidopsis thaliana nucleic acid binding AT2G42245 mRNA, complete cds Length = 383 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 462 cgtccttgaaatcaacaaatgcaacagg 489 |||||| ||||||||||||||||||||| Sbjct: 121 cgtcctggaaatcaacaaatgcaacagg 94
>gb|BT014707.1| Arabidopsis thaliana At2g42245.1 mRNA sequence Length = 243 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 462 cgtccttgaaatcaacaaatgcaacagg 489 |||||| ||||||||||||||||||||| Sbjct: 118 cgtcctggaaatcaacaaatgcaacagg 91
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Plus Query: 117 aaaacgtcatatattatggcacggaggg 144 ||||||||||||||||||| |||||||| Sbjct: 3824645 aaaacgtcatatattatgggacggaggg 3824672
>gb|AY219130.1| Arabidopsis thaliana hypothetical protein (At2g42245/T24P15.1) mRNA, complete cds Length = 1070 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 462 cgtccttgaaatcaacaaatgcaacagg 489 |||||| ||||||||||||||||||||| Sbjct: 713 cgtcctggaaatcaacaaatgcaacagg 686
>gb|AY219129.1| Arabidopsis thaliana hypothetical protein (At2g42245/T24P15.1) mRNA, complete cds Length = 1126 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 462 cgtccttgaaatcaacaaatgcaacagg 489 |||||| ||||||||||||||||||||| Sbjct: 826 cgtcctggaaatcaacaaatgcaacagg 799
>gb|AY219128.1| Arabidopsis thaliana hypothetical protein (At2g42245/T24P15.1) mRNA, complete cds Length = 1004 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 462 cgtccttgaaatcaacaaatgcaacagg 489 |||||| ||||||||||||||||||||| Sbjct: 713 cgtcctggaaatcaacaaatgcaacagg 686
>gb|AY090961.1| Arabidopsis thaliana At2g42245 mRNA sequence Length = 352 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 462 cgtccttgaaatcaacaaatgcaacagg 489 |||||| ||||||||||||||||||||| Sbjct: 74 cgtcctggaaatcaacaaatgcaacagg 47
>dbj|AK221963.1| Arabidopsis thaliana mRNA for putative RNA-binding protein, complete cds, clone: RAFL22-54-J04 Length = 3657 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 462 cgtccttgaaatcaacaaatgcaacagg 489 |||||| ||||||||||||||||||||| Sbjct: 781 cgtcctggaaatcaacaaatgcaacagg 754
>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11, complete sequence Length = 132151 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Plus Query: 117 aaaacgtcatatattatggcacggaggg 144 ||||||||||||||||||| |||||||| Sbjct: 103269 aaaacgtcatatattatgggacggaggg 103296
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Plus Query: 117 aaaacgtcatatattatggcacggaggg 144 ||||||||||||||||||| |||||||| Sbjct: 3824756 aaaacgtcatatattatgggacggaggg 3824783
>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015N19, complete sequence Length = 168430 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Plus Query: 117 aaaacgtcatatattatggcacggaggg 144 ||||||||||||||||||| |||||||| Sbjct: 31118 aaaacgtcatatattatgggacggaggg 31145
>gb|AY954831.1| Arabidopsis thaliana hypothetical protein (At2g42245) mRNA, complete cds Length = 864 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 462 cgtccttgaaatcaacaaatgcaacagg 489 |||||| ||||||||||||||||||||| Sbjct: 709 cgtcctggaaatcaacaaatgcaacagg 682
>emb|CT025837.1| Medicago truncatula chromosome 5 clone mth2-28f11, COMPLETE SEQUENCE Length = 99258 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 465 ccttgaaatcaacaaatgcaacaggtgctcc 495 |||||||||||||||||| |||||| ||||| Sbjct: 39951 ccttgaaatcaacaaatgaaacaggggctcc 39921
>gb|AC102528.20| Mus musculus chromosome 5, clone RP23-30D20, complete sequence Length = 241925 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 400 ccagatgatgaatgtagaatagc 422 ||||||||||||||||||||||| Sbjct: 111770 ccagatgatgaatgtagaatagc 111792
>emb|BX821402.1|CNS0A8AM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL39ZD06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 992 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 463 gtccttgaaatcaacaaatgcaacagg 489 ||||| ||||||||||||||||||||| Sbjct: 770 gtcctggaaatcaacaaatgcaacagg 744
>gb|AC127021.25| Medicago truncatula clone mth2-5e5, complete sequence Length = 139116 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 115 ctaaaacgtcatatattatggcacggagggggta 148 ||||||||||||||| | ||| |||||||||||| Sbjct: 71042 ctaaaacgtcatataatttgggacggagggggta 71075
>gb|AC146589.31| Medicago truncatula clone mth2-145o21, complete sequence Length = 125457 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Minus Query: 115 ctaaaacgtcatatattatggcacggagggggta 148 ||||||||||||||| | ||| |||||||||||| Sbjct: 16654 ctaaaacgtcatataatttgggacggagggggta 16621
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 126 tatattatggcacggagggggtagtt 151 |||||||||| ||||||||||||||| Sbjct: 2490968 tatattatgggacggagggggtagtt 2490993
>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416D03 Length = 157112 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 126 tatattatggcacggagggggtagtt 151 |||||||||| ||||||||||||||| Sbjct: 45389 tatattatgggacggagggggtagtt 45414
>emb|AL132955.1|ATF1P2 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2 Length = 101154 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 442 gctttcagttgaactgtgatc 462 ||||||||||||||||||||| Sbjct: 13211 gctttcagttgaactgtgatc 13231
>gb|AC002561.3| Arabidopsis thaliana chromosome 2 BAC T24P15 genomic sequence, complete sequence Length = 56635 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 469 gaaatcaacaaatgcaacagg 489 ||||||||||||||||||||| Sbjct: 37287 gaaatcaacaaatgcaacagg 37267
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 125 atatattatggcacggagggggtag 149 ||||||||||| ||||||||||||| Sbjct: 33006882 atatattatggaacggagggggtag 33006858 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 tatattatggcacggagggggtag 149 |||||||||| ||||||||||||| Sbjct: 8929903 tatattatgggacggagggggtag 8929926
>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_A01 Length = 139121 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 125 atatattatggcacggagggggtag 149 ||||||||||| ||||||||||||| Sbjct: 52822 atatattatggaacggagggggtag 52798
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 499 cttgttttgcatcttcagctttat 522 ||||||||||| |||||||||||| Sbjct: 77851 cttgttttgcaacttcagctttat 77828
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 499 cttgttttgcatcttcagctttat 522 ||||||||||| |||||||||||| Sbjct: 77836 cttgttttgcaacttcagctttat 77813
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 499 cttgttttgcatcttcagctttat 522 ||||||||||| |||||||||||| Sbjct: 77837 cttgttttgcaacttcagctttat 77814
>gb|AE004357.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, section 14 of 93 of the complete chromosome Length = 17041 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 attctaaacgcatgccctcg 399 |||||||||||||||||||| Sbjct: 11048 attctaaacgcatgccctcg 11067
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 499 cttgttttgcatcttcagctttat 522 ||||||||||| |||||||||||| Sbjct: 77843 cttgttttgcaacttcagctttat 77820
>gb|AC148485.10| Medicago truncatula clone mth2-46j5, complete sequence Length = 111045 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 63 tactacctctgcatcataatatatgacgtttt 94 |||| ||||||| |||||||||||| |||||| Sbjct: 13076 tactccctctgcttcataatatatgtcgtttt 13045
>emb|AL445463.8| Human DNA sequence from clone RP11-264H19 on chromosome 10 Contains part of the BTRC gene for beta-transducin repeat containing, complete sequence Length = 143078 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 ccagatgatgaatgtagaat 419 |||||||||||||||||||| Sbjct: 48378 ccagatgatgaatgtagaat 48359
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16 Length = 345012 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 gctgcttgcgcaggcccatc 366 |||||||||||||||||||| Sbjct: 33572 gctgcttgcgcaggcccatc 33553
>emb|BX649575.18| Zebrafish DNA sequence from clone CH211-215H12 in linkage group 8, complete sequence Length = 171493 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 cgctgcatttaggatctgtt 338 |||||||||||||||||||| Sbjct: 2535 cgctgcatttaggatctgtt 2554
>emb|BX510360.8| Zebrafish DNA sequence from clone DKEY-265A7 in linkage group 2, complete sequence Length = 213323 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 tgttttgcatcttcagcttt 520 |||||||||||||||||||| Sbjct: 90819 tgttttgcatcttcagcttt 90838
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 gctgcttgcgcaggcccatc 366 |||||||||||||||||||| Sbjct: 4747097 gctgcttgcgcaggcccatc 4747078
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 tgcatcttcagctttatgaa 525 |||||||||||||||||||| Sbjct: 19945396 tgcatcttcagctttatgaa 19945377
>gb|AC092596.3| Homo sapiens BAC clone RP11-100J5 from 4, complete sequence Length = 175644 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 taaaatcaatcacatcatgt 196 |||||||||||||||||||| Sbjct: 92687 taaaatcaatcacatcatgt 92706
>dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0613F08 Length = 142937 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 tatattatggcacggagggggtag 149 |||||||||| ||||||||||||| Sbjct: 134921 tatattatgggacggagggggtag 134944
>dbj|AP005803.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0060K08 Length = 159626 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 tatattatggcacggagggggtag 149 |||||||||| ||||||||||||| Sbjct: 2512 tatattatgggacggagggggtag 2535
>gb|AC005920.1|AC005920 Homo sapiens chromosome 17, clone hRPK.700_H_6, complete sequence Length = 175793 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ccagcccacaatgaacacca 313 |||||||||||||||||||| Sbjct: 7099 ccagcccacaatgaacacca 7118
>gb|DQ139876.1| Bacillus anthracis strain Sterne dihydropteroate synthase (folP) gene, complete cds Length = 843 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 499 cttgttttgcatcttcagctttat 522 ||||||||||| |||||||||||| Sbjct: 340 cttgttttgcaacttcagctttat 317
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 499 cttgttttgcatcttcagctttat 522 ||||||||||| |||||||||||| Sbjct: 77836 cttgttttgcaacttcagctttat 77813
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 499 cttgttttgcatcttcagctttat 522 ||||||||||| |||||||||||| Sbjct: 77842 cttgttttgcaacttcagctttat 77819
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 tgcatcttcagctttatgaa 525 |||||||||||||||||||| Sbjct: 19871610 tgcatcttcagctttatgaa 19871591
>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165433 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 tgcatcttcagctttatgaa 525 |||||||||||||||||||| Sbjct: 81864 tgcatcttcagctttatgaa 81883 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,623,648 Number of Sequences: 3902068 Number of extensions: 4623648 Number of successful extensions: 74477 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74028 Number of HSP's gapped (non-prelim): 444 length of query: 592 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 569 effective length of database: 17,143,297,704 effective search space: 9754536393576 effective search space used: 9754536393576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)