ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK061485.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
3dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
4dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
5ref|NM_180036.1| Arabidopsis thaliana nucleic acid binding AT2G4... 48 0.033
6gb|BT014707.1| Arabidopsis thaliana At2g42245.1 mRNA sequence 48 0.033
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 48 0.033
8gb|AY219130.1| Arabidopsis thaliana hypothetical protein (At2g42... 48 0.033
9gb|AY219129.1| Arabidopsis thaliana hypothetical protein (At2g42... 48 0.033
10gb|AY219128.1| Arabidopsis thaliana hypothetical protein (At2g42... 48 0.033
11gb|AY090961.1| Arabidopsis thaliana At2g42245 mRNA sequence 48 0.033
12dbj|AK221963.1| Arabidopsis thaliana mRNA for putative RNA-bindi... 48 0.033
13gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.033
14dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.033
15gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.033
16gb|AY954831.1| Arabidopsis thaliana hypothetical protein (At2g42... 48 0.033
17emb|CT025837.1| Medicago truncatula chromosome 5 clone mth2-28f1... 46 0.13
18gb|AC102528.20| Mus musculus chromosome 5, clone RP23-30D20, com... 46 0.13
19emb|BX821402.1|CNS0A8AM Arabidopsis thaliana Full-length cDNA Co... 46 0.13
20gb|AC127021.25| Medicago truncatula clone mth2-5e5, complete seq... 44 0.52
21gb|AC146589.31| Medicago truncatula clone mth2-145o21, complete ... 44 0.52
22dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.52
23dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.52
24emb|AL132955.1|ATF1P2 Arabidopsis thaliana DNA chromosome 3, BAC... 42 2.0
25gb|AC002561.3| Arabidopsis thaliana chromosome 2 BAC T24P15 geno... 42 2.0
26dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
27dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
28gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 40 8.1
29gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 40 8.1
30gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 40 8.1
31gb|AE004357.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 8.1
32gb|CP000001.1| Bacillus cereus E33L, complete genome 40 8.1
33gb|AC148485.10| Medicago truncatula clone mth2-46j5, complete se... 40 8.1
34emb|AL445463.8| Human DNA sequence from clone RP11-264H19 on chr... 40 8.1
35emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genom... 40 8.1
36emb|BX649575.18| Zebrafish DNA sequence from clone CH211-215H12 ... 40 8.1
37emb|BX510360.8| Zebrafish DNA sequence from clone DKEY-265A7 in ... 40 8.1
38gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 8.1
39dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
40gb|AC092596.3| Homo sapiens BAC clone RP11-100J5 from 4, complet... 40 8.1
41dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
42dbj|AP005803.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
43gb|AC005920.1|AC005920 Homo sapiens chromosome 17, clone hRPK.70... 40 8.1
44gb|DQ139876.1| Bacillus anthracis strain Sterne dihydropteroate ... 40 8.1
45gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 40 8.1
46gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 40 8.1
47gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.1
48emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118... 40 8.1 
>dbj|AK061485.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A02, full
           insert sequence
          Length = 1356

 Score =  194 bits (98), Expect = 2e-46
 Identities = 177/202 (87%), Gaps = 1/202 (0%)
 Strand = Plus / Minus

                                                                       
Query: 348 ctgcttgcgcaggcccatccgagatttggcatattctaaacgcatgccctcgccagatga 407
           |||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 977 ctgcttacgcaggcccatccgagatttggcatattctaaacgcatcccctcgccagttga 918

                                                                       
Query: 408 tgaatgtagaatagctccttggagacgattcagggctttcagttgaactgtgatcgtcct 467
           |||||  | |||| ||||||||||||| || | ||| ||||||||||||||     ||||
Sbjct: 917 tgaatacaaaataactccttggagacggtttatggc-ttcagttgaactgtccatatcct 859

                                                                       
Query: 468 tgaaatcaacaaatgcaacaggtgctccgaacttgttttgcatcttcagctttatgaatc 527
           ||||||| ||||||||||| || ||||| ||||||||||||||||||| |||||||||||
Sbjct: 858 tgaaatccacaaatgcaactggagctccaaacttgttttgcatcttcacctttatgaatc 799

                                 
Query: 528 cctcacaaccagagaaaacatc 549
           || | ||||  |||||||||||
Sbjct: 798 ccgcgcaacttgagaaaacatc 777
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                            
Query: 465      ccttgaaatcaacaaatgcaacaggtgctccgaacttgttttgcatcttcagctttatga 524
                |||||||||| ||||||||||| || ||||| ||||||||||||||||||| ||||||||
Sbjct: 28289808 ccttgaaatccacaaatgcaactggagctccaaacttgttttgcatcttcacctttatga 28289749

                     
Query: 525      atccc 529
                |||||
Sbjct: 28289748 atccc 28289744



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 67/77 (87%), Gaps = 1/77 (1%)
 Strand = Plus / Minus

                                                                            
Query: 382      tctaaacgcatgccctcgccagatgatgaatgtagaatagctccttggagacgattcagg 441
                ||||||||||| |||||||||| ||||||||  | |||| ||||||||||||| || | |
Sbjct: 28290595 tctaaacgcatcccctcgccagttgatgaatacaaaataactccttggagacggtttatg 28290536

                                 
Query: 442      gctttcagttgaactgt 458
                || ||||||||||||||
Sbjct: 28290535 gc-ttcagttgaactgt 28290520



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 348      ctgcttgcgcaggcccatccgagatttggcatat 381
                |||||| |||||||||||||||||||||||||||
Sbjct: 28290790 ctgcttacgcaggcccatccgagatttggcatat 28290757
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>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0661G04
          Length = 157292

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                        
Query: 465  ccttgaaatcaacaaatgcaacaggtgctccgaacttgttttgcatcttcagctttatga 524
            |||||||||| ||||||||||| || ||||| ||||||||||||||||||| ||||||||
Sbjct: 2386 ccttgaaatccacaaatgcaactggagctccaaacttgttttgcatcttcacctttatga 2327

                 
Query: 525  atccc 529
            |||||
Sbjct: 2326 atccc 2322



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 67/77 (87%), Gaps = 1/77 (1%)
 Strand = Plus / Minus

                                                                        
Query: 382  tctaaacgcatgccctcgccagatgatgaatgtagaatagctccttggagacgattcagg 441
            ||||||||||| |||||||||| ||||||||  | |||| ||||||||||||| || | |
Sbjct: 3173 tctaaacgcatcccctcgccagttgatgaatacaaaataactccttggagacggtttatg 3114

                             
Query: 442  gctttcagttgaactgt 458
            || ||||||||||||||
Sbjct: 3113 gc-ttcagttgaactgt 3098



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                              
Query: 348  ctgcttgcgcaggcccatccgagatttggcatat 381
            |||||| |||||||||||||||||||||||||||
Sbjct: 3368 ctgcttacgcaggcccatccgagatttggcatat 3335
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>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0623A10
          Length = 156517

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                         
Query: 465   ccttgaaatcaacaaatgcaacaggtgctccgaacttgttttgcatcttcagctttatga 524
             |||||||||| ||||||||||| || ||||| ||||||||||||||||||| ||||||||
Sbjct: 87837 ccttgaaatccacaaatgcaactggagctccaaacttgttttgcatcttcacctttatga 87778

                  
Query: 525   atccc 529
             |||||
Sbjct: 87777 atccc 87773



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 67/77 (87%), Gaps = 1/77 (1%)
 Strand = Plus / Minus

                                                                         
Query: 382   tctaaacgcatgccctcgccagatgatgaatgtagaatagctccttggagacgattcagg 441
             ||||||||||| |||||||||| ||||||||  | |||| ||||||||||||| || | |
Sbjct: 88624 tctaaacgcatcccctcgccagttgatgaatacaaaataactccttggagacggtttatg 88565

                              
Query: 442   gctttcagttgaactgt 458
             || ||||||||||||||
Sbjct: 88564 gc-ttcagttgaactgt 88549



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                               
Query: 348   ctgcttgcgcaggcccatccgagatttggcatat 381
             |||||| |||||||||||||||||||||||||||
Sbjct: 88819 ctgcttacgcaggcccatccgagatttggcatat 88786
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>ref|NM_180036.1| Arabidopsis thaliana nucleic acid binding AT2G42245 mRNA, complete
           cds
          Length = 383

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 462 cgtccttgaaatcaacaaatgcaacagg 489
           |||||| |||||||||||||||||||||
Sbjct: 121 cgtcctggaaatcaacaaatgcaacagg 94
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>gb|BT014707.1| Arabidopsis thaliana At2g42245.1 mRNA sequence
          Length = 243

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 462 cgtccttgaaatcaacaaatgcaacagg 489
           |||||| |||||||||||||||||||||
Sbjct: 118 cgtcctggaaatcaacaaatgcaacagg 91
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 117     aaaacgtcatatattatggcacggaggg 144
               ||||||||||||||||||| ||||||||
Sbjct: 3824645 aaaacgtcatatattatgggacggaggg 3824672
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>gb|AY219130.1| Arabidopsis thaliana hypothetical protein (At2g42245/T24P15.1)
           mRNA, complete cds
          Length = 1070

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 462 cgtccttgaaatcaacaaatgcaacagg 489
           |||||| |||||||||||||||||||||
Sbjct: 713 cgtcctggaaatcaacaaatgcaacagg 686
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>gb|AY219129.1| Arabidopsis thaliana hypothetical protein (At2g42245/T24P15.1)
           mRNA, complete cds
          Length = 1126

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 462 cgtccttgaaatcaacaaatgcaacagg 489
           |||||| |||||||||||||||||||||
Sbjct: 826 cgtcctggaaatcaacaaatgcaacagg 799
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>gb|AY219128.1| Arabidopsis thaliana hypothetical protein (At2g42245/T24P15.1)
           mRNA, complete cds
          Length = 1004

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 462 cgtccttgaaatcaacaaatgcaacagg 489
           |||||| |||||||||||||||||||||
Sbjct: 713 cgtcctggaaatcaacaaatgcaacagg 686
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>gb|AY090961.1| Arabidopsis thaliana At2g42245 mRNA sequence
          Length = 352

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 462 cgtccttgaaatcaacaaatgcaacagg 489
           |||||| |||||||||||||||||||||
Sbjct: 74  cgtcctggaaatcaacaaatgcaacagg 47
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>dbj|AK221963.1| Arabidopsis thaliana mRNA for putative RNA-binding protein,
           complete cds, clone: RAFL22-54-J04
          Length = 3657

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 462 cgtccttgaaatcaacaaatgcaacagg 489
           |||||| |||||||||||||||||||||
Sbjct: 781 cgtcctggaaatcaacaaatgcaacagg 754
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>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11,
              complete sequence
          Length = 132151

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 117    aaaacgtcatatattatggcacggaggg 144
              ||||||||||||||||||| ||||||||
Sbjct: 103269 aaaacgtcatatattatgggacggaggg 103296
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 117     aaaacgtcatatattatggcacggaggg 144
               ||||||||||||||||||| ||||||||
Sbjct: 3824756 aaaacgtcatatattatgggacggaggg 3824783
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>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0015N19, complete sequence
          Length = 168430

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 117   aaaacgtcatatattatggcacggaggg 144
             ||||||||||||||||||| ||||||||
Sbjct: 31118 aaaacgtcatatattatgggacggaggg 31145
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>gb|AY954831.1| Arabidopsis thaliana hypothetical protein (At2g42245) mRNA,
           complete cds
          Length = 864

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 462 cgtccttgaaatcaacaaatgcaacagg 489
           |||||| |||||||||||||||||||||
Sbjct: 709 cgtcctggaaatcaacaaatgcaacagg 682
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>emb|CT025837.1| Medicago truncatula chromosome 5 clone mth2-28f11, COMPLETE SEQUENCE
          Length = 99258

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 465   ccttgaaatcaacaaatgcaacaggtgctcc 495
             |||||||||||||||||| |||||| |||||
Sbjct: 39951 ccttgaaatcaacaaatgaaacaggggctcc 39921
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>gb|AC102528.20| Mus musculus chromosome 5, clone RP23-30D20, complete sequence
          Length = 241925

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 400    ccagatgatgaatgtagaatagc 422
              |||||||||||||||||||||||
Sbjct: 111770 ccagatgatgaatgtagaatagc 111792
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>emb|BX821402.1|CNS0A8AM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL39ZD06 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 992

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 463 gtccttgaaatcaacaaatgcaacagg 489
           ||||| |||||||||||||||||||||
Sbjct: 770 gtcctggaaatcaacaaatgcaacagg 744
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>gb|AC127021.25| Medicago truncatula clone mth2-5e5, complete sequence
          Length = 139116

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 115   ctaaaacgtcatatattatggcacggagggggta 148
             ||||||||||||||| | ||| ||||||||||||
Sbjct: 71042 ctaaaacgtcatataatttgggacggagggggta 71075
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>gb|AC146589.31| Medicago truncatula clone mth2-145o21, complete sequence
          Length = 125457

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 115   ctaaaacgtcatatattatggcacggagggggta 148
             ||||||||||||||| | ||| ||||||||||||
Sbjct: 16654 ctaaaacgtcatataatttgggacggagggggta 16621
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 126     tatattatggcacggagggggtagtt 151
               |||||||||| |||||||||||||||
Sbjct: 2490968 tatattatgggacggagggggtagtt 2490993
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>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0416D03
          Length = 157112

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 126   tatattatggcacggagggggtagtt 151
             |||||||||| |||||||||||||||
Sbjct: 45389 tatattatgggacggagggggtagtt 45414
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>emb|AL132955.1|ATF1P2 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2
          Length = 101154

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 442   gctttcagttgaactgtgatc 462
             |||||||||||||||||||||
Sbjct: 13211 gctttcagttgaactgtgatc 13231
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>gb|AC002561.3| Arabidopsis thaliana chromosome 2 BAC T24P15 genomic sequence, complete
             sequence
          Length = 56635

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 469   gaaatcaacaaatgcaacagg 489
             |||||||||||||||||||||
Sbjct: 37287 gaaatcaacaaatgcaacagg 37267
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 125      atatattatggcacggagggggtag 149
                ||||||||||| |||||||||||||
Sbjct: 33006882 atatattatggaacggagggggtag 33006858



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 126     tatattatggcacggagggggtag 149
               |||||||||| |||||||||||||
Sbjct: 8929903 tatattatgggacggagggggtag 8929926
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>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1293_A01
          Length = 139121

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 125   atatattatggcacggagggggtag 149
             ||||||||||| |||||||||||||
Sbjct: 52822 atatattatggaacggagggggtag 52798
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 499   cttgttttgcatcttcagctttat 522
             ||||||||||| ||||||||||||
Sbjct: 77851 cttgttttgcaacttcagctttat 77828
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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 499   cttgttttgcatcttcagctttat 522
             ||||||||||| ||||||||||||
Sbjct: 77836 cttgttttgcaacttcagctttat 77813
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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 499   cttgttttgcatcttcagctttat 522
             ||||||||||| ||||||||||||
Sbjct: 77837 cttgttttgcaacttcagctttat 77814
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>gb|AE004357.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, section 14
             of 93 of the complete chromosome
          Length = 17041

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 380   attctaaacgcatgccctcg 399
             ||||||||||||||||||||
Sbjct: 11048 attctaaacgcatgccctcg 11067
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 499   cttgttttgcatcttcagctttat 522
             ||||||||||| ||||||||||||
Sbjct: 77843 cttgttttgcaacttcagctttat 77820
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>gb|AC148485.10| Medicago truncatula clone mth2-46j5, complete sequence
          Length = 111045

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 63    tactacctctgcatcataatatatgacgtttt 94
             |||| ||||||| |||||||||||| ||||||
Sbjct: 13076 tactccctctgcttcataatatatgtcgtttt 13045
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>emb|AL445463.8| Human DNA sequence from clone RP11-264H19 on chromosome 10 Contains
             part of the BTRC gene for beta-transducin repeat
             containing, complete sequence
          Length = 143078

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   ccagatgatgaatgtagaat 419
             ||||||||||||||||||||
Sbjct: 48378 ccagatgatgaatgtagaat 48359
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>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16
          Length = 345012

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   gctgcttgcgcaggcccatc 366
             ||||||||||||||||||||
Sbjct: 33572 gctgcttgcgcaggcccatc 33553
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>emb|BX649575.18| Zebrafish DNA sequence from clone CH211-215H12 in linkage group 8,
            complete sequence
          Length = 171493

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 319  cgctgcatttaggatctgtt 338
            ||||||||||||||||||||
Sbjct: 2535 cgctgcatttaggatctgtt 2554
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>emb|BX510360.8| Zebrafish DNA sequence from clone DKEY-265A7 in linkage group 2,
             complete sequence
          Length = 213323

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 501   tgttttgcatcttcagcttt 520
             ||||||||||||||||||||
Sbjct: 90819 tgttttgcatcttcagcttt 90838
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 347     gctgcttgcgcaggcccatc 366
               ||||||||||||||||||||
Sbjct: 4747097 gctgcttgcgcaggcccatc 4747078
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 506      tgcatcttcagctttatgaa 525
                ||||||||||||||||||||
Sbjct: 19945396 tgcatcttcagctttatgaa 19945377
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>gb|AC092596.3| Homo sapiens BAC clone RP11-100J5 from 4, complete sequence
          Length = 175644

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   taaaatcaatcacatcatgt 196
             ||||||||||||||||||||
Sbjct: 92687 taaaatcaatcacatcatgt 92706
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>dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0613F08
          Length = 142937

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 126    tatattatggcacggagggggtag 149
              |||||||||| |||||||||||||
Sbjct: 134921 tatattatgggacggagggggtag 134944
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>dbj|AP005803.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBa0060K08
          Length = 159626

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 126  tatattatggcacggagggggtag 149
            |||||||||| |||||||||||||
Sbjct: 2512 tatattatgggacggagggggtag 2535
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>gb|AC005920.1|AC005920 Homo sapiens chromosome 17, clone hRPK.700_H_6, complete sequence
          Length = 175793

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 294  ccagcccacaatgaacacca 313
            ||||||||||||||||||||
Sbjct: 7099 ccagcccacaatgaacacca 7118
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>gb|DQ139876.1| Bacillus anthracis strain Sterne dihydropteroate synthase (folP)
           gene, complete cds
          Length = 843

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 499 cttgttttgcatcttcagctttat 522
           ||||||||||| ||||||||||||
Sbjct: 340 cttgttttgcaacttcagctttat 317
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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 499   cttgttttgcatcttcagctttat 522
             ||||||||||| ||||||||||||
Sbjct: 77836 cttgttttgcaacttcagctttat 77813
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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 499   cttgttttgcatcttcagctttat 522
             ||||||||||| ||||||||||||
Sbjct: 77842 cttgttttgcaacttcagctttat 77819
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 506      tgcatcttcagctttatgaa 525
                ||||||||||||||||||||
Sbjct: 19871610 tgcatcttcagctttatgaa 19871591
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>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 165433

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 506   tgcatcttcagctttatgaa 525
             ||||||||||||||||||||
Sbjct: 81864 tgcatcttcagctttatgaa 81883


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,623,648
Number of Sequences: 3902068
Number of extensions: 4623648
Number of successful extensions: 74477
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74028
Number of HSP's gapped (non-prelim): 444
length of query: 592
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 569
effective length of database: 17,143,297,704
effective search space: 9754536393576
effective search space used: 9754536393576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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