ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SF21_HELAN (O23969) Pollen-specific protein SF21 60 5e-09
2LRC56_MOUSE (Q8K375) Leucine-rich repeat-containing protein 56 31 2.6
3LRC56_RAT (Q4V8C9) Leucine-rich repeat-containing protein 56 30 3.3
4IF2_RHOS4 (Q3IYN5) Translation initiation factor IF-2 30 4.4
5RLPA_PSEAE (Q9X6V6) RlpA-like lipoprotein precursor 30 5.7
6PKNA_MYCLE (P54743) Probable serine/threonine-protein kinase pkn... 30 5.7
7TATB_SHIFL (P69427) Sec-independent protein translocase protein ... 29 7.5
8TATB_ECOLI (P69425) Sec-independent protein translocase protein ... 29 7.5
9TATB_ECOL6 (Q8FBI7) Sec-independent protein translocase protein ... 29 7.5
10TATB_ECO57 (P69426) Sec-independent protein translocase protein ... 29 7.5
11C11B1_PIG (Q29552) Cytochrome P450 11B1, mitochondrial precursor... 29 7.5
12ABDB_DROME (P09087) Homeobox protein abdominal-B (P3) (Infraabdo... 29 7.5
13ANTR1_HUMAN (Q9H6X2) Anthrax toxin receptor 1 precursor (Tumor e... 29 7.5
14SAS4_CAEBR (Q60JJ0) Spindle assembly abnormal protein 4 29 9.7
15C11B1_SHEEP (P51663) Cytochrome P450 11B1, mitochondrial precurs... 29 9.7
16MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protei... 29 9.7

>SF21_HELAN (O23969) Pollen-specific protein SF21|
          Length = 352

 Score = 59.7 bits (143), Expect = 5e-09
 Identities = 33/65 (50%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
 Frame = -3

Query: 536 KAVHMTAKLDKRYSALVEVQACGSVVTEEQPHAMLIPMEYFPYGIRLVQAEPCKL--QPS 363
           +A+ +  KL    SALVEV ACGS+VT+EQPHAMLIP+E F  G  L +  PC+    P 
Sbjct: 257 EALQIAEKLGTNCSALVEVHACGSMVTQEQPHAMLIPLENFLKGFGLYR--PCRYSNSPR 314

Query: 362 QPFEP 348
            P  P
Sbjct: 315 SPLGP 319



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 24/53 (45%), Positives = 29/53 (54%)
 Frame = -1

Query: 412 LMGYGLFXXXXXXXXXXXPLNPFCISPELLSPESMGVKLKPIKTRASLRA*VH 254
           L G+GL+           PL P  I PELL PE MG+KL+PIK R S +   H
Sbjct: 298 LKGFGLYRPCRYSNSPRSPLGPSSIDPELLYPEKMGLKLRPIKLRVSPQPRAH 350



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>LRC56_MOUSE (Q8K375) Leucine-rich repeat-containing protein 56|
          Length = 552

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = +3

Query: 348 GFKGLRGLELTWLGLNKPYPIREVL--HWYQHRMRLLLRHDRPTRLHL-----DESTVSL 506
           G   +R  EL+W GLN P+P  + L  H   HR R +     P RL       D   V +
Sbjct: 14  GTASIRVRELSWQGLNNPHPQNKRLGSHGDIHRERWVEERLSPARLQALAQVDDLQLVRV 73

Query: 507 IKLC 518
           +++C
Sbjct: 74  LEMC 77



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>LRC56_RAT (Q4V8C9) Leucine-rich repeat-containing protein 56|
          Length = 548

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = +3

Query: 348 GFKGLRGLELTWLGLNKPYPIREVL--HWYQHRMRLLLRHDRPTRLHL-----DESTVSL 506
           G   +R  EL+W GLN P P  + L  H   +R R +  H  P RL       D   V +
Sbjct: 14  GTASIRVRELSWQGLNNPQPQNKRLGSHGDIYRERRVEEHLSPARLQALAQVDDLQLVRV 73

Query: 507 IKLC 518
           +++C
Sbjct: 74  LEMC 77



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>IF2_RHOS4 (Q3IYN5) Translation initiation factor IF-2|
          Length = 836

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +2

Query: 317 RREELRRYTEWVQRAARAGAYMAR----PEQAVSHKGSTPLVSASHAAAPPSRQTHTPAP 484
           R E LR+  E  +RA R     AR     ++A +     P  + S A+APPS +   P  
Sbjct: 126 RAEALRQKAEDEERARREAEEAARRAEEAKRAPAPAAPQPAPAESRASAPPSAKPGLPPS 185

Query: 485 RRE 493
           R+E
Sbjct: 186 RKE 188



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>RLPA_PSEAE (Q9X6V6) RlpA-like lipoprotein precursor|
          Length = 342

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 347 WVQRAARAGAYMARPEQAVSHKGSTPLVSASHAAAPPSRQTHTPAP 484
           W QR   A   +A+P+QAV+        + + A A P  +T+TP P
Sbjct: 198 WAQRGRPAPMVLAQPKQAVAQAAPAAAQTQAVAMAQPI-ETYTPPP 242



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>PKNA_MYCLE (P54743) Probable serine/threonine-protein kinase pknA (EC|
           2.7.11.1)
          Length = 437

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 359 AARAGAYMARPEQAVSHKGSTP--LVSASHAAAPPSRQTHTPAPRR 490
           A RAG    RP Q  S   ++P  + S++ A A  +  T TPAPRR
Sbjct: 273 AVRAGHRPPRPNQTPSSGRASPTTIPSSTQARAAVACGTKTPAPRR 318



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>TATB_SHIFL (P69427) Sec-independent protein translocase protein tatB|
          Length = 171

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 17/76 (22%), Positives = 32/76 (42%)
 Frame = +2

Query: 257 HLRSETGPRLDRLQLHAHALRREELRRYTEWVQRAARAGAYMARPEQAVSHKGSTPLVSA 436
           +L  E    +D L+  A +++R  +    E     A         +   +H+G TP  + 
Sbjct: 73  NLTPELKASMDELRQAAESMKRSYVANDPEKASDEAHTIHNPVVKDNEAAHEGVTPAAAQ 132

Query: 437 SHAAAPPSRQTHTPAP 484
           + A++P  +   TP P
Sbjct: 133 TQASSPEQKPETTPEP 148



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>TATB_ECOLI (P69425) Sec-independent protein translocase protein tatB|
          Length = 171

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 17/76 (22%), Positives = 32/76 (42%)
 Frame = +2

Query: 257 HLRSETGPRLDRLQLHAHALRREELRRYTEWVQRAARAGAYMARPEQAVSHKGSTPLVSA 436
           +L  E    +D L+  A +++R  +    E     A         +   +H+G TP  + 
Sbjct: 73  NLTPELKASMDELRQAAESMKRSYVANDPEKASDEAHTIHNPVVKDNEAAHEGVTPAAAQ 132

Query: 437 SHAAAPPSRQTHTPAP 484
           + A++P  +   TP P
Sbjct: 133 TQASSPEQKPETTPEP 148



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>TATB_ECOL6 (Q8FBI7) Sec-independent protein translocase protein tatB|
          Length = 171

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 17/76 (22%), Positives = 32/76 (42%)
 Frame = +2

Query: 257 HLRSETGPRLDRLQLHAHALRREELRRYTEWVQRAARAGAYMARPEQAVSHKGSTPLVSA 436
           +L  E    +D L+  A +++R  +    E     A         +   +H+G TP  + 
Sbjct: 73  NLTPELKASMDELRQAAESMKRSYVANDPEKASDEAHTIHNPVVKDNETAHEGVTPAAAQ 132

Query: 437 SHAAAPPSRQTHTPAP 484
           + A++P  +   TP P
Sbjct: 133 TQASSPEQKPETTPEP 148



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>TATB_ECO57 (P69426) Sec-independent protein translocase protein tatB|
          Length = 171

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 17/76 (22%), Positives = 32/76 (42%)
 Frame = +2

Query: 257 HLRSETGPRLDRLQLHAHALRREELRRYTEWVQRAARAGAYMARPEQAVSHKGSTPLVSA 436
           +L  E    +D L+  A +++R  +    E     A         +   +H+G TP  + 
Sbjct: 73  NLTPELKASMDELRQAAESMKRSYVANDPEKASDEAHTIHNPVVKDNEAAHEGVTPAAAQ 132

Query: 437 SHAAAPPSRQTHTPAP 484
           + A++P  +   TP P
Sbjct: 133 TQASSPEQKPETTPEP 148



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>C11B1_PIG (Q29552) Cytochrome P450 11B1, mitochondrial precursor (EC|
           1.14.15.4) (CYPXIB1) (P450C11) (Steroid
           11-beta-hydroxylase)
          Length = 503

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
 Frame = +2

Query: 251 YMHLRSE-------TGP--RLDRLQLHAHALRREELRRYTEWVQRAARAGAYMARPEQAV 403
           Y HLR          GP  RLDRLQL+   L  + ++++T  V   AR  +   R     
Sbjct: 119 YRHLRGHKCGVFLLNGPTWRLDRLQLNPGVLSLQAMQKFTPLVDGVARDFSQALRARVMQ 178

Query: 404 SHKGSTPL 427
           + +GS  L
Sbjct: 179 NARGSLTL 186



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>ABDB_DROME (P09087) Homeobox protein abdominal-B (P3) (Infraabdominal 7)|
           (IAB-7) (PH189)
          Length = 493

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
 Frame = +2

Query: 224 HLQPFLLFPYMHLRSETGPRLDRLQLHAHALRREELRRYTEWVQRAARAGAYMARPEQAV 403
           HLQ      + HL             H H  ++++ +++   V  ++ +     + +Q+ 
Sbjct: 27  HLQQLHHHAHHHLPQPLHTTSHHHSAHPHLQQQQQQQQHA--VVASSPSSVLQQQQQQST 84

Query: 404 SHKGSTPLVSASHAAAPPS-----RQTHTPAPRREHCISYQALRSCEQLS 538
               STP  +  +   PP      +Q H PAP+++  +  Q  +  +QL+
Sbjct: 85  PTTHSTPTHAVMYEDPPPVPLVAVQQQHLPAPQQQQQLQQQQQQQQQQLA 134



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>ANTR1_HUMAN (Q9H6X2) Anthrax toxin receptor 1 precursor (Tumor endothelial|
           marker 8)
          Length = 564

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 422 PLVSASHAAAPPSRQTHTPAPRREHC 499
           PL +A H ++PP    +TP P   HC
Sbjct: 496 PLNNAYHTSSPPPAPIYTPPPPAPHC 521



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>SAS4_CAEBR (Q60JJ0) Spindle assembly abnormal protein 4|
          Length = 761

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -3

Query: 290 DQDAGQSQSVGAYMEKEEKVGGVRSFRLTRRSAIL 186
           D+D G  +   AY+ K E   G   FR+TRRSA L
Sbjct: 8   DEDQGSQKPKRAYLRKGE---GTARFRMTRRSAPL 39



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>C11B1_SHEEP (P51663) Cytochrome P450 11B1, mitochondrial precursor (EC|
           1.14.15.4) (CYPXIB1) (P450C11) (Steroid
           11-beta-hydroxylase)
          Length = 503

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
 Frame = +2

Query: 218 SSHLQPFLLFPYMHLRSETGP------------RLDRLQLHAHALRREELRRYTEWVQRA 361
           S H Q  LL P++  R   G             RLDRL+L+   L    L++YT  V   
Sbjct: 105 SLHPQRMLLEPWLAYRQARGHKCGVFLLNGPQWRLDRLRLNPDVLSLPALQKYTPLVDGV 164

Query: 362 ARAGAYMARPEQAVSHKGSTPL 427
           AR  +   +     + +GS  L
Sbjct: 165 ARDFSQTLKARVLQNARGSLTL 186



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>MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protein) (86 kDa|
           protein)
          Length = 537

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
 Frame = +2

Query: 356 RAARAGAYMARPEQAVSHK-------GSTPLVSASHAAAPPSRQTHTPAPRREH 496
           + A A A    PE A   K       G  P     HA  PP ++ H P P+ EH
Sbjct: 17  KKAPAPASKKAPEPAPKEKPAPTPKEGHAPTPKEEHA--PPPKEEHAPPPKEEH 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,222,157
Number of Sequences: 219361
Number of extensions: 1471394
Number of successful extensions: 4520
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4513
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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