ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20l03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_477553.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1617 Score = 99.6 bits (50), Expect = 9e-18 Identities = 83/94 (88%) Strand = Plus / Minus Query: 442 tccctccacatcttcaccagcgcatccaccatgtcctcctgcacgccggccgccagcctc 501 ||||||||||||||||||||||| || |||||||| |||||||| || || ||||||| Sbjct: 923 tccctccacatcttcaccagcgcgtcgaccatgtcttcctgcacccctgcactcagcctc 864 Query: 502 tccggctcgaggtgcttgtcgataaccgcgtcga 535 || |||||||||||||||||||| |||| ||||| Sbjct: 863 tcgggctcgaggtgcttgtcgatcaccgagtcga 830 Score = 50.1 bits (25), Expect = 0.008 Identities = 82/101 (81%) Strand = Plus / Minus Query: 151 tgcatggtttctcttggaatcagcagagtccccggtgggtgcagcctgaagttctctttc 210 |||||||||| |||||||| || || |||| |||||||||||||| || || ||||| Sbjct: 1220 tgcatggtttgtcttggaaccaacaagttccctggtgggtgcagcctaaaattttctttt 1161 Query: 211 actaccatcttgaggtacttcaggccttgggcatcttcttc 251 | || ||||| ||||||||| ||| |||| ||||||||| Sbjct: 1160 attatcatctcgaggtacttgaggttttggctatcttcttc 1120 Score = 40.1 bits (20), Expect = 7.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 305 gcatcacccttgggttcctcatcagctccgacatgatcca 344 ||||||||||||| |||||||| | ||| ||||| ||||| Sbjct: 1066 gcatcacccttggattcctcatgatctcggacattatcca 1027
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 99.6 bits (50), Expect = 9e-18 Identities = 83/94 (88%) Strand = Plus / Plus Query: 442 tccctccacatcttcaccagcgcatccaccatgtcctcctgcacgccggccgccagcctc 501 ||||||||||||||||||||||| || |||||||| |||||||| || || ||||||| Sbjct: 11415415 tccctccacatcttcaccagcgcgtcgaccatgtcttcctgcacccctgcactcagcctc 11415474 Query: 502 tccggctcgaggtgcttgtcgataaccgcgtcga 535 || |||||||||||||||||||| |||| ||||| Sbjct: 11415475 tcgggctcgaggtgcttgtcgatcaccgagtcga 11415508 Score = 99.6 bits (50), Expect = 9e-18 Identities = 86/98 (87%) Strand = Plus / Plus Query: 442 tccctccacatcttcaccagcgcatccaccatgtcctcctgcacgccggccgccagcctc 501 |||||||||| | |||||| ||| || ||||||||||||||||| ||||| |||||| Sbjct: 11369792 tccctccacaccatcaccatcgcgtcgaccatgtcctcctgcaccccggcgctgagcctc 11369851 Query: 502 tccggctcgaggtgcttgtcgataaccgcgtcgaagaa 539 || |||||||||||||||||||| |||||||||||||| Sbjct: 11369852 tcaggctcgaggtgcttgtcgatcaccgcgtcgaagaa 11369889 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 153 catggtttctcttggaatcagcagagtccccggtgggtgcagcctgaagttctctttcac 212 |||||||| ||| ||||||| ||| ||||| ||||| ||||||||||| || ||||| | Sbjct: 11358843 catggtttgtctaggaatcaacagtgtccctggtggatgcagcctgaaattttcttttat 11358902 Query: 213 taccatcttgaggtacttca 232 || |||||| ||||| |||| Sbjct: 11358903 tatcatcttaaggtatttca 11358922 Score = 50.1 bits (25), Expect = 0.008 Identities = 82/101 (81%) Strand = Plus / Plus Query: 151 tgcatggtttctcttggaatcagcagagtccccggtgggtgcagcctgaagttctctttc 210 |||||||||| |||||||| || || |||| |||||||||||||| || || ||||| Sbjct: 11413542 tgcatggtttgtcttggaaccaacaagttccctggtgggtgcagcctaaaattttctttt 11413601 Query: 211 actaccatcttgaggtacttcaggccttgggcatcttcttc 251 | || ||||| ||||||||| ||| |||| ||||||||| Sbjct: 11413602 attatcatctcgaggtacttgaggttttggctatcttcttc 11413642 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 305 gcatcacccttgggttcctcatcagctccgacatgatcca 344 |||| ||||||||||||||||| ||||| ||||| ||||| Sbjct: 11358995 gcattacccttgggttcctcataagctcggacataatcca 11359034 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 305 gcatcacccttgggttcctcatcagctccgacatgatcca 344 |||| ||||||||||||||||| ||||| ||||| ||||| Sbjct: 11350481 gcattacccttgggttcctcataagctcggacataatcca 11350520 Score = 40.1 bits (20), Expect = 7.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 305 gcatcacccttgggttcctcatcagctccgacatgatcca 344 ||||||||||||| |||||||| | ||| ||||| ||||| Sbjct: 11413696 gcatcacccttggattcctcatgatctcggacattatcca 11413735
>dbj|AP005258.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446G09 Length = 146898 Score = 99.6 bits (50), Expect = 9e-18 Identities = 83/94 (88%) Strand = Plus / Plus Query: 442 tccctccacatcttcaccagcgcatccaccatgtcctcctgcacgccggccgccagcctc 501 ||||||||||||||||||||||| || |||||||| |||||||| || || ||||||| Sbjct: 24935 tccctccacatcttcaccagcgcgtcgaccatgtcttcctgcacccctgcactcagcctc 24994 Query: 502 tccggctcgaggtgcttgtcgataaccgcgtcga 535 || |||||||||||||||||||| |||| ||||| Sbjct: 24995 tcgggctcgaggtgcttgtcgatcaccgagtcga 25028 Score = 50.1 bits (25), Expect = 0.008 Identities = 82/101 (81%) Strand = Plus / Plus Query: 151 tgcatggtttctcttggaatcagcagagtccccggtgggtgcagcctgaagttctctttc 210 |||||||||| |||||||| || || |||| |||||||||||||| || || ||||| Sbjct: 23062 tgcatggtttgtcttggaaccaacaagttccctggtgggtgcagcctaaaattttctttt 23121 Query: 211 actaccatcttgaggtacttcaggccttgggcatcttcttc 251 | || ||||| ||||||||| ||| |||| ||||||||| Sbjct: 23122 attatcatctcgaggtacttgaggttttggctatcttcttc 23162 Score = 40.1 bits (20), Expect = 7.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 305 gcatcacccttgggttcctcatcagctccgacatgatcca 344 ||||||||||||| |||||||| | ||| ||||| ||||| Sbjct: 23216 gcatcacccttggattcctcatgatctcggacattatcca 23255
>dbj|AP004346.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0656C04 Length = 143411 Score = 99.6 bits (50), Expect = 9e-18 Identities = 83/94 (88%) Strand = Plus / Plus Query: 442 tccctccacatcttcaccagcgcatccaccatgtcctcctgcacgccggccgccagcctc 501 ||||||||||||||||||||||| || |||||||| |||||||| || || ||||||| Sbjct: 115926 tccctccacatcttcaccagcgcgtcgaccatgtcttcctgcacccctgcactcagcctc 115985 Query: 502 tccggctcgaggtgcttgtcgataaccgcgtcga 535 || |||||||||||||||||||| |||| ||||| Sbjct: 115986 tcgggctcgaggtgcttgtcgatcaccgagtcga 116019 Score = 99.6 bits (50), Expect = 9e-18 Identities = 86/98 (87%) Strand = Plus / Plus Query: 442 tccctccacatcttcaccagcgcatccaccatgtcctcctgcacgccggccgccagcctc 501 |||||||||| | |||||| ||| || ||||||||||||||||| ||||| |||||| Sbjct: 70303 tccctccacaccatcaccatcgcgtcgaccatgtcctcctgcaccccggcgctgagcctc 70362 Query: 502 tccggctcgaggtgcttgtcgataaccgcgtcgaagaa 539 || |||||||||||||||||||| |||||||||||||| Sbjct: 70363 tcaggctcgaggtgcttgtcgatcaccgcgtcgaagaa 70400 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 153 catggtttctcttggaatcagcagagtccccggtgggtgcagcctgaagttctctttcac 212 |||||||| ||| ||||||| ||| ||||| ||||| ||||||||||| || ||||| | Sbjct: 59354 catggtttgtctaggaatcaacagtgtccctggtggatgcagcctgaaattttcttttat 59413 Query: 213 taccatcttgaggtacttca 232 || |||||| ||||| |||| Sbjct: 59414 tatcatcttaaggtatttca 59433 Score = 50.1 bits (25), Expect = 0.008 Identities = 82/101 (81%) Strand = Plus / Plus Query: 151 tgcatggtttctcttggaatcagcagagtccccggtgggtgcagcctgaagttctctttc 210 |||||||||| |||||||| || || |||| |||||||||||||| || || ||||| Sbjct: 114053 tgcatggtttgtcttggaaccaacaagttccctggtgggtgcagcctaaaattttctttt 114112 Query: 211 actaccatcttgaggtacttcaggccttgggcatcttcttc 251 | || ||||| ||||||||| ||| |||| ||||||||| Sbjct: 114113 attatcatctcgaggtacttgaggttttggctatcttcttc 114153 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 305 gcatcacccttgggttcctcatcagctccgacatgatcca 344 |||| ||||||||||||||||| ||||| ||||| ||||| Sbjct: 59506 gcattacccttgggttcctcataagctcggacataatcca 59545 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 305 gcatcacccttgggttcctcatcagctccgacatgatcca 344 |||| ||||||||||||||||| ||||| ||||| ||||| Sbjct: 50992 gcattacccttgggttcctcataagctcggacataatcca 51031 Score = 40.1 bits (20), Expect = 7.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 305 gcatcacccttgggttcctcatcagctccgacatgatcca 344 ||||||||||||| |||||||| | ||| ||||| ||||| Sbjct: 114207 gcatcacccttggattcctcatgatctcggacattatcca 114246
>ref|NM_193877.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1557 Score = 69.9 bits (35), Expect = 8e-09 Identities = 44/47 (93%) Strand = Plus / Minus Query: 298 gccttccgcatcacccttgggttcctcatcagctccgacatgatcca 344 ||||| ||||||||||| |||||||||||||||||||||||| |||| Sbjct: 1010 gccttgcgcatcaccctagggttcctcatcagctccgacatggtcca 964
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 69.9 bits (35), Expect = 8e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 298 gccttccgcatcacccttgggttcctcatcagctccgacatgatcca 344 ||||| ||||||||||| |||||||||||||||||||||||| |||| Sbjct: 15564525 gccttgcgcatcaccctagggttcctcatcagctccgacatggtcca 15564571
>dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1111C09 Length = 156393 Score = 69.9 bits (35), Expect = 8e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 298 gccttccgcatcacccttgggttcctcatcagctccgacatgatcca 344 ||||| ||||||||||| |||||||||||||||||||||||| |||| Sbjct: 122034 gccttgcgcatcaccctagggttcctcatcagctccgacatggtcca 122080
>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416G11 Length = 138858 Score = 69.9 bits (35), Expect = 8e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 298 gccttccgcatcacccttgggttcctcatcagctccgacatgatcca 344 ||||| ||||||||||| |||||||||||||||||||||||| |||| Sbjct: 2422 gccttgcgcatcaccctagggttcctcatcagctccgacatggtcca 2468
>gb|AY108916.1| Zea mays PCO123628 mRNA sequence Length = 535 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 143 cgcagctctgcatggtttctcttggaatcagcagagtccccggtgggtgcagcctgaagt 202 |||||||| |||||| || | |||||||| || |||||||||||||| | |||||||| Sbjct: 462 cgcagctcctcatggtctcccgtggaatcaacaaggtccccggtgggtggatcctgaagt 521 Query: 203 tctctttcac 212 |||||||||| Sbjct: 522 tctctttcac 531
>ref|XM_464360.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1560 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 306 catcacccttgggttcctcatcagctccgacatg 339 |||||| |||||||||||||| |||||||||||| Sbjct: 1014 catcactcttgggttcctcatgagctccgacatg 981
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 306 catcacccttgggttcctcatcagctccgacatg 339 |||||| |||||||||||||| |||||||||||| Sbjct: 4724862 catcactcttgggttcctcatgagctccgacatg 4724895 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 306 catcacccttgggttcctcatcagctccgacat 338 ||||||||||||||||||||| || |||||||| Sbjct: 6556586 catcacccttgggttcctcattagttccgacat 6556554 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 298 gccttccgcatcacccttgggttcctcatcagctccg 334 |||||| |||| ||||||||||| | ||||||||||| Sbjct: 4827528 gccttctgcatgacccttgggtttcgcatcagctccg 4827492 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Minus Query: 299 ccttccgcatcacccttgggttcctcatcagctccgacatg 339 |||| ||||| |||||||| ||| |||| |||||||||||| Sbjct: 4801793 cctttcgcataacccttggattcttcatgagctccgacatg 4801753 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 306 catcacccttgggttcctcatcagctccgacat 338 |||||| |||||||| ||||||||||| ||||| Sbjct: 4786501 catcactcttgggtttctcatcagctctgacat 4786469
>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_B01 Length = 129329 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 306 catcacccttgggttcctcatcagctccgacatg 339 |||||| |||||||||||||| |||||||||||| Sbjct: 5452 catcactcttgggttcctcatgagctccgacatg 5485 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 298 gccttccgcatcacccttgggttcctcatcagctccg 334 |||||| |||| ||||||||||| | ||||||||||| Sbjct: 108118 gccttctgcatgacccttgggtttcgcatcagctccg 108082 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Minus Query: 299 ccttccgcatcacccttgggttcctcatcagctccgacatg 339 |||| ||||| |||||||| ||| |||| |||||||||||| Sbjct: 82383 cctttcgcataacccttggattcttcatgagctccgacatg 82343 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 306 catcacccttgggttcctcatcagctccgacat 338 |||||| |||||||| ||||||||||| ||||| Sbjct: 67091 catcactcttgggtttctcatcagctctgacat 67059
>gb|AF029857.1|AF029857 Sorghum bicolor cytochrome P450 CYP99A1 (CYP99A1) mRNA, partial cds Length = 1689 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 319 ttcctcatcagctccgacatgatcca 344 |||||||||||||||||||||||||| Sbjct: 974 ttcctcatcagctccgacatgatcca 949
>ref|XM_464658.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1536 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 306 catcacccttgggttcctcatcagctccgacat 338 ||||||||||||||||||||| || |||||||| Sbjct: 999 catcacccttgggttcctcattagttccgacat 967
>dbj|AP005846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1307A11 Length = 131538 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 306 catcacccttgggttcctcatcagctccgacat 338 ||||||||||||||||||||| || |||||||| Sbjct: 117199 catcacccttgggttcctcattagttccgacat 117167
>gb|AF321863.1|AF321863 Lolium rigidum clone Lol-3-k putative cytochrome P450 mRNA, complete cds Length = 1832 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Minus Query: 300 cttccgcatcacccttgggttcctcatcagctccgacat 338 ||||| ||||||| |||||||| ||||||||||||||| Sbjct: 983 cttccccatcacctttgggttcgccatcagctccgacat 945
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 306 catcacccttgggttcctcatcagctccgacatga 340 ||||||| |||||||||||||| ||||||||||| Sbjct: 5297887 catcacctctgggttcctcatcaactccgacatga 5297921 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 316 gggttcctcatcagctccgacatga 340 ||||||||||| ||||||||||||| Sbjct: 5450826 gggttcctcatgagctccgacatga 5450802
>dbj|AK071864.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023124B03, full insert sequence Length = 1780 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Minus Query: 306 catcacccttgggttcctcatcagctccgacatga 340 ||||||| |||||||||||||| ||||||||||| Sbjct: 1034 catcacctctgggttcctcatcaactccgacatga 1000
>emb|CT486003.10| Mouse DNA sequence from clone RP23-415F11 on chromosome 14, complete sequence Length = 181037 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 225 gtacttcaggccttgggcatctt 247 ||||||||||||||||||||||| Sbjct: 122302 gtacttcaggccttgggcatctt 122280
>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete sequence Length = 139771 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Plus Query: 316 gggttcctcatcagctccgacatgatccag 345 |||||| ||||||||||||||||| ||||| Sbjct: 30348 gggttcttcatcagctccgacatggtccag 30377
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Minus Query: 316 gggttcctcatcagctccgacatgatccag 345 |||||| ||||||||||||||||| ||||| Sbjct: 21857468 gggttcttcatcagctccgacatggtccag 21857439
>emb|CR974412.1| M.murinus DNA sequence from clone CH257-37C10, complete sequence Length = 250701 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 441 atccctccacatcttcaccagc 462 |||||||||||||||||||||| Sbjct: 189518 atccctccacatcttcaccagc 189539
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Plus Query: 306 catcacccttgggttcctcatcagctccgacatg 339 |||||||| ||||||||||||||||||| |||| Sbjct: 17413061 catcaccccagggttcctcatcagctccgccatg 17413094
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Minus Query: 316 gggttcctcatcagctccgacatgatccag 345 |||||| ||||||||||||||||| ||||| Sbjct: 21850497 gggttcttcatcagctccgacatggtccag 21850468
>dbj|AP004684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0012H03 Length = 163377 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Plus Query: 306 catcacccttgggttcctcatcagctccgacatg 339 |||||||| ||||||||||||||||||| |||| Sbjct: 44102 catcaccccagggttcctcatcagctccgccatg 44135
>gb|AF029858.1|AF029858 Sorghum bicolor cytochrome P450 CYP71E1 (CYP71E1) mRNA, complete cds Length = 1929 Score = 44.1 bits (22), Expect = 0.48 Identities = 52/62 (83%) Strand = Plus / Minus Query: 278 cggcgcgcacctcggactgggccttccgcatcacccttgggttcctcatcagctccgaca 337 |||| |||||||||| ||| ||||||| || |||| || |||| |||||||||||||| Sbjct: 1161 cggcccgcacctcggcctgcgccttcctcagcacctgcggcttccgcatcagctccgaca 1102 Query: 338 tg 339 || Sbjct: 1101 tg 1100
>ref|XM_474673.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1524 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 316 gggttcctcatcagctccgacatga 340 ||||||||||| ||||||||||||| Sbjct: 968 gggttcctcatgagctccgacatga 944
>ref|XM_464379.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1557 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 298 gccttccgcatcacccttgggttcctcatcagctccg 334 |||||| |||| ||||||||||| | ||||||||||| Sbjct: 1025 gccttctgcatgacccttgggtttcgcatcagctccg 989
>ref|XM_464372.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1545 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 306 catcacccttgggttcctcatcagctccgacat 338 |||||| |||||||| ||||||||||| ||||| Sbjct: 1008 catcactcttgggtttctcatcagctctgacat 976
>emb|AL662936.4|OSJN00137 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0052P16, complete sequence Length = 155702 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 316 gggttcctcatcagctccgacatga 340 ||||||||||| ||||||||||||| Sbjct: 151475 gggttcctcatgagctccgacatga 151451
>gb|AC104440.1| Homo sapiens chromosome 3 clone RP11-814M22, complete sequence Length = 168367 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 cattcctccccatggcccaaa 94 ||||||||||||||||||||| Sbjct: 33616 cattcctccccatggcccaaa 33636
>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1073_F05 Length = 124252 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 298 gccttccgcatcacccttgggttcctcatcagctccg 334 |||||| |||| ||||||||||| | ||||||||||| Sbjct: 69687 gccttctgcatgacccttgggtttcgcatcagctccg 69651 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Minus Query: 299 ccttccgcatcacccttgggttcctcatcagctccgacatg 339 |||| ||||| |||||||| ||| |||| |||||||||||| Sbjct: 43952 cctttcgcataacccttggattcttcatgagctccgacatg 43912 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 306 catcacccttgggttcctcatcagctccgacat 338 |||||| |||||||| ||||||||||| ||||| Sbjct: 28660 catcactcttgggtttctcatcagctctgacat 28628
>dbj|AK071546.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100C12, full insert sequence Length = 1750 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 316 gggttcctcatcagctccgacatga 340 ||||||||||| ||||||||||||| Sbjct: 1032 gggttcctcatgagctccgacatga 1008
>dbj|AP004147.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-785K22, complete sequence Length = 97120 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 25 agggtttatttgggtcggtaattac 49 |||||||||||| |||||||||||| Sbjct: 47329 agggtttatttgtgtcggtaattac 47353
>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01, complete sequence Length = 150283 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 316 gggttcctcatcagctccgacatga 340 ||||||||||| ||||||||||||| Sbjct: 5456 gggttcctcatgagctccgacatga 5432
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ccttgggcatcttcttcgtc 254 |||||||||||||||||||| Sbjct: 1006186 ccttgggcatcttcttcgtc 1006167
>gb|AC146430.4| Pan troglodytes BAC clone RP43-21F8 from 7, complete sequence Length = 179251 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 gtgtatcctggtgccagcaggcac 125 |||| ||||||||||||||||||| Sbjct: 32796 gtgtgtcctggtgccagcaggcac 32819
>ref|XM_429187.1| PREDICTED: Gallus gallus similar to paralemmin-2 (LOC431635), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 tggtgccagcaggcacgctg 129 |||||||||||||||||||| Sbjct: 508 tggtgccagcaggcacgctg 527
>gb|AC146193.3| Pan troglodytes BAC clone CH251-483N24 from Y, complete sequence Length = 232304 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 ccaaacgtccacgtgtatcc 109 |||||||||||||||||||| Sbjct: 154398 ccaaacgtccacgtgtatcc 154417
>gb|AC146234.3| Pan troglodytes BAC clone CH251-199F20 from Y, complete sequence Length = 155191 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ccaaacgtccacgtgtatcc 109 |||||||||||||||||||| Sbjct: 101483 ccaaacgtccacgtgtatcc 101464
>gb|AC092327.4| Homo sapiens chromosome 16 clone RP11-158I3, complete sequence Length = 189756 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 taaggtttatttcagacttcattc 78 ||||||||||||||| |||||||| Sbjct: 48808 taaggtttatttcagtcttcattc 48785
>emb|AL590396.13| Human DNA sequence from clone RP11-193H5 on chromosome 1 Contains the 3' end of a novel gene (LOC401987), a actin pseudogene, a cytochrome b (MTCYB) pseudogene, a NADH dehydrogenase 6 (MTND6) pseudogene and a NADH dehydrogenase 5 (MTND5) pseudogene, complete sequence Length = 122108 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 gcagctctgcatggtttctc 163 |||||||||||||||||||| Sbjct: 107079 gcagctctgcatggtttctc 107098
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 cctgcacgccggccgccagc 498 |||||||||||||||||||| Sbjct: 3273269 cctgcacgccggccgccagc 3273288
>gb|AC007269.3| Homo sapiens PAC clone RP5-1058P19 from 7, complete sequence Length = 93011 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 gtgtatcctggtgccagcaggcac 125 |||| ||||||||||||||||||| Sbjct: 85788 gtgtgtcctggtgccagcaggcac 85765
>emb|CR762498.10| Zebrafish DNA sequence from clone DKEY-4J1 in linkage group 13, complete sequence Length = 169361 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tttagggattaaagatgagg 27 |||||||||||||||||||| Sbjct: 115699 tttagggattaaagatgagg 115680
>dbj|BS000611.1| Pan troglodytes chromosome Y clone:PTB-386A09, complete sequences Length = 171989 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ccaaacgtccacgtgtatcc 109 |||||||||||||||||||| Sbjct: 34309 ccaaacgtccacgtgtatcc 34290
>dbj|BS000534.1| Pan troglodytes chromosome Y clone:PTB-092H12, complete sequences Length = 224014 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ccaaacgtccacgtgtatcc 109 |||||||||||||||||||| Sbjct: 162796 ccaaacgtccacgtgtatcc 162777
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 ccaaacgtccacgtgtatcc 109 |||||||||||||||||||| Sbjct: 22806054 ccaaacgtccacgtgtatcc 22806073
>ref|XM_572062.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 1896 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ccttgggcatcttcttcgtc 254 |||||||||||||||||||| Sbjct: 1858 ccttgggcatcttcttcgtc 1839
>gb|AC012476.8|AC012476 Homo sapiens chromosome 15 clone RP11-532F12 map 15q15, complete sequence Length = 178248 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 agtccccggtgggtgcagcc 196 |||||||||||||||||||| Sbjct: 77664 agtccccggtgggtgcagcc 77645
>gb|AC040170.9| Homo sapiens chromosome 16 clone RP11-514D23, complete sequence Length = 173012 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 taaggtttatttcagacttcattc 78 ||||||||||||||| |||||||| Sbjct: 30374 taaggtttatttcagtcttcattc 30397
>gb|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y, complete sequence Length = 178377 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ccaaacgtccacgtgtatcc 109 |||||||||||||||||||| Sbjct: 55526 ccaaacgtccacgtgtatcc 55507
>emb|AL772343.17| Mouse DNA sequence from clone RP23-196N14 on chromosome 4, complete sequence Length = 154059 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 432 cccatcttgatccctccacatctt 455 |||||||| ||||||||||||||| Sbjct: 78744 cccatctttatccctccacatctt 78721
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 tcatcagctccgacatgatc 342 |||||||||||||||||||| Sbjct: 1937954 tcatcagctccgacatgatc 1937973
>gb|DQ187720.1| Homo sapiens donor 8 serotype PPS4 clone 24 immunoglobulin light chain variable region mRNA, partial cds Length = 331 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 tgtatcctggtgccagcagg 122 |||||||||||||||||||| Sbjct: 99 tgtatcctggtgccagcagg 118
>gb|AF027390.1|AF027390 Homo sapiens 7q telomere, complete sequence Length = 225432 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 gtgtatcctggtgccagcaggcac 125 |||| ||||||||||||||||||| Sbjct: 17853 gtgtgtcctggtgccagcaggcac 17830
>gb|U78190.1|HSU78190 Human GTP cyclohydrolase I feedback regulatory protein gene, complete cds Length = 4000 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 agtccccggtgggtgcagcc 196 |||||||||||||||||||| Sbjct: 585 agtccccggtgggtgcagcc 566
>gb|AY837831.1| Linum usitatissimum putative cinnamyl alcohol dehydrogenase mRNA, partial cds Length = 816 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 ctcatcagctccgacatgatccag 345 |||||||||||||| ||||||||| Sbjct: 600 ctcatcagctccgagatgatccag 577
>dbj|AB004795.1| Pseudomonas sp. gene for dipeptidyl aminopeptidase, complete cds Length = 3039 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 ctgcacgccggccgccagcc 499 |||||||||||||||||||| Sbjct: 1398 ctgcacgccggccgccagcc 1417 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,065,294 Number of Sequences: 3902068 Number of extensions: 4065294 Number of successful extensions: 87027 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86594 Number of HSP's gapped (non-prelim): 431 length of query: 557 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 534 effective length of database: 17,143,297,704 effective search space: 9154520973936 effective search space used: 9154520973936 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
