ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein 539 e-150
2emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMW... 303 2e-79
3ref|XM_476620.1| Oryza sativa (japonica cultivar-group), mRNA 178 6e-42
4ref|XM_476619.1| Oryza sativa (japonica cultivar-group), mRNA 176 2e-41
5dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 2e-41
6dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 6e-39
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 113 3e-22
8dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic D... 113 3e-22
9gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (... 111 1e-21
10emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10 92 1e-15
11gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA 88 2e-14
12gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA 84 3e-13
13emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMW... 84 3e-13
14dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
15emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-speci... 72 1e-09
16gb|AY348557.1| Trifolium pratense 10 kDa photosystem II polypept... 60 4e-06
17emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD... 56 6e-05
18gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypep... 52 0.001
19emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide p... 48 0.015
20emb|X04753.1|STLS1G Potato light-inducible tissue-specific ST-LS... 48 0.015
21dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone... 46 0.059
22dbj|AP006396.1| Lotus japonicus genomic DNA, chromosome 3, clone... 46 0.059
23ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 ... 44 0.23
24gb|AY096544.1| Arabidopsis thaliana putative photosystem II poly... 44 0.23
25gb|AY070103.1| Arabidopsis thaliana putative photosystem II poly... 44 0.23
26emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Co... 44 0.23
27emb|BX813377.1|CNS0AC7S Arabidopsis thaliana Full-length cDNA Co... 44 0.23
28emb|BX813545.1|CNS0AC1I Arabidopsis thaliana Full-length cDNA Co... 44 0.23
29emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Co... 44 0.23
30emb|BX818517.1|CNS0AB2P Arabidopsis thaliana Full-length cDNA Co... 44 0.23
31emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Co... 44 0.23
32gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete ... 44 0.23
33emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 6... 44 0.23
34gb|AF035554.1|AF035554 Pisaster ochraceus protein kinase C-relat... 42 0.93
35gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 3.7
36gb|AC132830.12| Mus musculus chromosome 1, clone RP24-566B6, com... 40 3.7
37gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, co... 40 3.7
38gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome... 40 3.7
39gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosom... 40 3.7
40emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section... 40 3.7
41emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N... 40 3.7
42gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, comple... 40 3.7
43dbj|AK083570.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 40 3.7
44gb|L31936.1|BNABIF11G Brassica campestris ssp. pekinensis (clone... 40 3.7 
>emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein
          Length = 575

 Score =  539 bits (272), Expect = e-150
 Identities = 278/281 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccgcactattatacacatcgtttggngcatagcttggtttgctgcacataggcttcagg 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 498 tccgcactattatacacatcgtttggtgcatagcttggtttgctgcacataggcttcagg 439

                                                                       
Query: 61  aagccaaggcgctagtactgtngacaagaagagcaccgcccagcagaattccagcaagag 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattccagcaagag 379

                                                                       
Query: 121 tcactgcccagagaaacagccccgtctttcctccaacataaacgtcgccacttggagacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tcactgcccagagaaacagccccgtctttcctccaacataaacgtcgccacttggagacc 319

                                                                       
Query: 181 actcttctggtgtgtatatagggctgtacccatcaacatttgctccatacttgtcggcna 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 318 actcttctggtgtgtatatagggctgtacccatcaacatttgctccatacttgtcggcaa 259

                                                    
Query: 241 actggtaaacacccttccccttggctacccttccagacgca 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 actggtaaacacccttccccttggctacccttccagacgca 218
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>emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMWG0658
          Length = 377

 Score =  303 bits (153), Expect = 2e-79
 Identities = 163/166 (98%), Gaps = 1/166 (0%)
 Strand = Plus / Minus

                                                                       
Query: 111 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgcca 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgcca 318

                                                                       
Query: 171 cttggagaccactcttctggtgtgtatatagggctgtacccatcaacatttgctccatac 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttggagaccactcttctggtgtgtatatagggctgtacccatcaacatttgctccatac 258

                                                         
Query: 231 ttgtcgg-cnaactggtaaacacccttccccttggctacccttcca 275
           |||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttgtcggnhdaactggtaaacacccttccccttggctacccttcca 212
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>ref|XM_476620.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 405

 Score =  178 bits (90), Expect = 6e-42
 Identities = 175/204 (85%)
 Strand = Plus / Minus

                                                                       
Query: 60  gaagccaaggcgctagtactgtngacaagaagagcaccgcccagcagaattccagcaaga 119
           ||||||||||| |||||| ||| |||||||||||||||  ||||||||||||||| ||||
Sbjct: 401 gaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattccagaaaga 342

                                                                       
Query: 120 gtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgccacttggagac 179
           || ||||||||||| |||| ||| ||||||||||||  |||||| || |||||||| |||
Sbjct: 341 gtgactgcccagagcaacaaccctgtctttcctccagtataaacatcaccacttggtgac 282

                                                                       
Query: 180 cactcttctggtgtgtatatagggctgtacccatcaacatttgctccatacttgtcggcn 239
           || || |||||  | ||||| |||||||| ||||||||||| ||||||||||||  ||| 
Sbjct: 281 cattcctctgggttatatattgggctgtatccatcaacattagctccatacttgctggca 222

                                   
Query: 240 aactggtaaacacccttccccttg 263
           |||||||| || || |||||||||
Sbjct: 221 aactggtagacccctttccccttg 198
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>ref|XM_476619.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 620

 Score =  176 bits (89), Expect = 2e-41
 Identities = 171/199 (85%)
 Strand = Plus / Minus

                                                                       
Query: 79  tgtngacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 138
           ||| |||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||  |
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaagta 401

                                                                       
Query: 139 gccccgtctttcctccaacataaacgtcgccacttggagaccactcttctggtgtgtata 198
             || | ||||||||||||||| || || ||| ||| |||||| |||||||| || ||||
Sbjct: 400 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 341

                                                                       
Query: 199 tagggctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacacccttcc 258
           | |||||||||||||||||||||||||||||||||| ||  |||||||||| |||||| |
Sbjct: 340 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 281

                              
Query: 259 ccttggctacccttccaga 277
           |||||||||||||||||||
Sbjct: 280 ccttggctacccttccaga 262
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>dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C07, full
           insert sequence
          Length = 620

 Score =  176 bits (89), Expect = 2e-41
 Identities = 171/199 (85%)
 Strand = Plus / Minus

                                                                       
Query: 79  tgtngacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 138
           ||| |||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||  |
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaagta 401

                                                                       
Query: 139 gccccgtctttcctccaacataaacgtcgccacttggagaccactcttctggtgtgtata 198
             || | ||||||||||||||| || || ||| ||| |||||| |||||||| || ||||
Sbjct: 400 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 341

                                                                       
Query: 199 tagggctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacacccttcc 258
           | |||||||||||||||||||||||||||||||||| ||  |||||||||| |||||| |
Sbjct: 340 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 281

                              
Query: 259 ccttggctacccttccaga 277
           |||||||||||||||||||
Sbjct: 280 ccttggctacccttccaga 262
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>dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L11, full
           insert sequence
          Length = 777

 Score =  168 bits (85), Expect = 6e-39
 Identities = 170/199 (85%)
 Strand = Plus / Minus

                                                                       
Query: 79  tgtngacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 138
           ||| |||||||| ||| ||||| |  ||| ||||||||||||| | |||||||||||  |
Sbjct: 461 tgtagacaagaatagcgccgccaactagacttccagcaagagtgattgcccagagaagta 402

                                                                       
Query: 139 gccccgtctttcctccaacataaacgtcgccacttggagaccactcttctggtgtgtata 198
             || | ||||||||||||||| || || ||| ||| |||||| |||||||| || ||||
Sbjct: 401 aacctgcctttcctccaacatagacatcaccagttgaagaccattcttctggggtatata 342

                                                                       
Query: 199 tagggctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacacccttcc 258
           | |||||||||||||||||||||||||||||||||| ||  |||||||||| |||||| |
Sbjct: 341 ttgggctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttc 282

                              
Query: 259 ccttggctacccttccaga 277
           |||||||||||||||||||
Sbjct: 281 ccttggctacccttccaga 263
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  113 bits (57), Expect = 3e-22
 Identities = 89/100 (89%)
 Strand = Plus / Minus

                                                                           
Query: 53      gcttcaggaagccaaggcgctagtactgtngacaagaagagcaccgcccagcagaattcc 112
               |||||| ||||||||||| |||||| ||| |||||||||||||||  |||||||||||||
Sbjct: 2490122 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 2490063

                                                       
Query: 113     agcaagagtcactgcccagagaaacagccccgtctttcct 152
               || |||||| ||||||||||| |||| ||| |||||||||
Sbjct: 2490062 agaaagagtgactgcccagagcaacaaccctgtctttcct 2490023



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                         
Query: 204     ctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacacccttcccct 261
               ||||||||||||||||||||||||||||||| ||  |||||||||| |||||| ||||
Sbjct: 2487136 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 2487079



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                         
Query: 204     ctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacacccttcccct 261
               ||||| ||||||||||| ||||||||||||  ||| |||||||| || || |||||||
Sbjct: 2489753 ctgtatccatcaacattagctccatacttgctggcaaactggtagacccctttcccct 2489696



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                        
Query: 79      tgtngacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 135
               ||| |||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 2487628 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 2487572



 Score = 46.1 bits (23), Expect = 0.059
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                          
Query: 150     cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgta 208
               ||||||||||| || || ||| ||| |||||| |||||||| || ||||| ||||||||
Sbjct: 2487433 cctccaacatagacatcaccagttgaagaccattcttctggggtatatattgggctgta 2487375
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>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score =  113 bits (57), Expect = 3e-22
 Identities = 89/100 (89%)
 Strand = Plus / Minus

                                                                         
Query: 53    gcttcaggaagccaaggcgctagtactgtngacaagaagagcaccgcccagcagaattcc 112
             |||||| ||||||||||| |||||| ||| |||||||||||||||  |||||||||||||
Sbjct: 55102 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 55043

                                                     
Query: 113   agcaagagtcactgcccagagaaacagccccgtctttcct 152
             || |||||| ||||||||||| |||| ||| |||||||||
Sbjct: 55042 agaaagagtgactgcccagagcaacaaccctgtctttcct 55003



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                       
Query: 204   ctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacacccttcccct 261
             ||||||||||||||||||||||||||||||| ||  |||||||||| |||||| ||||
Sbjct: 52116 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 52059



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 204   ctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacacccttcccct 261
             ||||| ||||||||||| ||||||||||||  ||| |||||||| || || |||||||
Sbjct: 54733 ctgtatccatcaacattagctccatacttgctggcaaactggtagacccctttcccct 54676



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                      
Query: 79    tgtngacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 135
             ||| |||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 52608 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 52552



 Score = 46.1 bits (23), Expect = 0.059
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 150   cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgta 208
             ||||||||||| || || ||| ||| |||||| |||||||| || ||||| ||||||||
Sbjct: 52413 cctccaacatagacatcaccagttgaagaccattcttctggggtatatattgggctgta 52355
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>gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (PsbR) mRNA,
           complete cds
          Length = 698

 Score =  111 bits (56), Expect = 1e-21
 Identities = 148/179 (82%)
 Strand = Plus / Minus

                                                                       
Query: 84  acaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaacagcccc 143
           |||||||||||||| ||   ||||| |||||||||||| | |||||||| ||  || || 
Sbjct: 468 acaagaagagcacctccacccagaagtccagcaagagtgattgcccagacaatgagacca 409

                                                                       
Query: 144 gtctttcctccaacataaacgtcgccacttggagaccactcttctggtgtgtatataggg 203
           ||  |||||||||||||||| || ||||| |||||||| || ||||||| ||| || |||
Sbjct: 408 gtggttcctccaacataaacatcaccactaggagaccattcgtctggtgagtagatcggg 349

                                                                      
Query: 204 ctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacacccttcccctt 262
           ||||| |||||||||||||| ||||| |||||  | || ||||| |||||||| |||||
Sbjct: 348 ctgtagccatcaacatttgcaccatatttgtccacaaattggtagacaccctttccctt 290
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>emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10
          Length = 639

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                       
Query: 150 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 209
           ||||||||||| || || |||||||||||||| || ||||   |||| || |||||||| 
Sbjct: 342 cctccaacatagacatcaccacttggagaccagtcatctgtgttgtagatggggctgtat 283

                                                                
Query: 210 ccatcaacatttgctccatacttgtcggcnaactggtaaacacccttcccctt 262
           |||||||||||||||||||| |||||  | || |||||||||||||| |||||
Sbjct: 282 ccatcaacatttgctccatatttgtcaacgaattggtaaacaccctttccctt 230
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>gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA
          Length = 438

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                       
Query: 150 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 209
           ||||||||||| || || || ||||||||||| || ||||   |||| || |||||||| 
Sbjct: 197 cctccaacatagacatcaccgcttggagaccagtcatctgtgttgtagatggggctgtat 138

                                                                  
Query: 210 ccatcaacatttgctccatacttgtcggcnaactggtaaacacccttccccttgg 264
           |||||||||||||||||||| |||||  | || |||||||||||||| |||||||
Sbjct: 137 ccatcaacatttgctccatatttgtcaacgaattggtaaacaccctttcccttgg 83
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>gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA
          Length = 373

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                       
Query: 150 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 209
           ||||||||||| || || || |||| |||||| || ||||   |||| || |||||||| 
Sbjct: 133 cctccaacatanacatcaccgcttgnagaccagtcatctgtgttgtagatggggctgtat 74

                                                                  
Query: 210 ccatcaacatttgctccatacttgtcggcnaactggtaaacacccttccccttgg 264
           |||||||||||||||||||| |||||  |||| |||||||||||||| |||||||
Sbjct: 73  ccatcaacatttgctccatatttgtcaacnaattggtaaacaccctttcccttgg 19
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>emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMWG0681
          Length = 247

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 42/42 (100%)
 Strand = Plus / Minus

                                                     
Query: 240 aactggtaaacacccttccccttggctacccttccagacgca 281
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aactggtaaacacccttccccttggctacccttccagacgca 205
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>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1470_H06
          Length = 62794

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                       
Query: 204   ctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacacccttcccct 261
             ||||||||||||||||||||||||||||||| ||  |||||||||| |||||| ||||
Sbjct: 60883 ctgtacccatcaacatttgctccatacttgttggaaaactggtaaagaccctttccct 60826



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                      
Query: 79    tgtngacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 135
             ||| |||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 61375 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 61319



 Score = 46.1 bits (23), Expect = 0.059
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 150   cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgta 208
             ||||||||||| || || ||| ||| |||||| |||||||| || ||||| ||||||||
Sbjct: 61180 cctccaacatagacatcaccagttgaagaccattcttctggggtatatattgggctgta 61122
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>emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-specific ST-LS1 gene
          Length = 560

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                       
Query: 150 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 209
           ||||||||||| || || ||||||||||||||||| ||||   |||| || || ||||| 
Sbjct: 323 cctccaacatagacatcaccacttggagaccactcatctgtgttgtagatgggactgtat 264

                                                                  
Query: 210 ccatcaacatttgctccatacttgtcggcnaactggtaaacacccttccccttgg 264
           ||||||||||| |||||||| |||||  |  | ||||| |||||||| |||||||
Sbjct: 263 ccatcaacattagctccatatttgtcaacatattggtacacaccctttcccttgg 209
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>gb|AY348557.1| Trifolium pratense 10 kDa photosystem II polypeptide mRNA, complete
           cds
          Length = 584

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                       
Query: 198 atagggctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacacccttc 257
           ||||| ||||| ||||||||||| || ||||| |||||  | ||||||||||||||||| 
Sbjct: 276 ataggactgtatccatcaacattagcaccatatttgtccacaaactggtaaacacccttt 217

                
Query: 258 ccctt 262
           |||||
Sbjct: 216 ccctt 212
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>emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD protein
          Length = 540

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 93/115 (80%)
 Strand = Plus / Minus

                                                                       
Query: 150 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 209
           ||||||||||| || || |||||||||||||| || || |   |||| || || ||||| 
Sbjct: 300 cctccaacatagacatcaccacttggagaccattcatccgtgttgtagatgggactgtat 241

                                                                  
Query: 210 ccatcaacatttgctccatacttgtcggcnaactggtaaacacccttccccttgg 264
           ||||||||||| |||||||| |||||  |  | ||||| |||||||| |||||||
Sbjct: 240 ccatcaacattagctccatatttgtcaacatattggtacacaccctttcccttgg 186
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>gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypeptide of photosystem II,
           complete cds
          Length = 590

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 204 ctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacaccctt 256
           ||||| ||||||||||| || |||||||||||  | || ||||||||||||||
Sbjct: 292 ctgtaaccatcaacattggcaccatacttgtcaacaaattggtaaacaccctt 240
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>emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide precursor of photosystem II
          Length = 632

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 92/115 (80%)
 Strand = Plus / Minus

                                                                       
Query: 150 cctccaacataaacgtcgccacttggagaccactcttctggtgtgtatatagggctgtac 209
           ||||||||||| || || |||||||||||||| || || |   |||| || || ||||| 
Sbjct: 323 cctccaacatagacatcaccacttggagaccattcatccgtgttgtagatgggactgtat 264

                                                                  
Query: 210 ccatcaacatttgctccatacttgtcggcnaactggtaaacacccttccccttgg 264
           ||||||||||| || ||||| |||||  |  | ||||| |||||||| |||||||
Sbjct: 263 ccatcaacattagccccatatttgtcaacatattggtacacaccctttcccttgg 209
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>emb|X04753.1|STLS1G Potato light-inducible tissue-specific ST-LS1 gene
          Length = 3699

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 150  cctccaacataaacgtcgccacttggagaccactcttctg 189
            ||||||||||| || || ||||||||||||||||| ||||
Sbjct: 3042 cctccaacatagacatcaccacttggagaccactcatctg 3003



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 204  ctgtacccatcaacatttgctccatacttgtc 235
            ||||| ||||||||||| |||||||| |||||
Sbjct: 2892 ctgtatccatcaacattagctccatatttgtc 2861
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>dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT17N21, TM0403,
             complete sequence
          Length = 97807

 Score = 46.1 bits (23), Expect = 0.059
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                       
Query: 204   ctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacacccttcccct 261
             ||||| ||||||||||| || || ||||||||  |  |||||||||||||||| ||||
Sbjct: 84239 ctgtatccatcaacattagcaccgtacttgtccacatactggtaaacaccctttccct 84296
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>dbj|AP006396.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT26P21, TM0279b,
             complete sequence
          Length = 28275

 Score = 46.1 bits (23), Expect = 0.059
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                       
Query: 204   ctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacacccttcccct 261
             ||||| ||||||||||| || || ||||||||  |  |||||||||||||||| ||||
Sbjct: 14725 ctgtatccatcaacattagcaccgtacttgtccacatactggtaaacaccctttccct 14668
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>ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 mRNA, complete cds
          Length = 647

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 193 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacac 252
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 353 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 294

            
Query: 253 c 253
           |
Sbjct: 293 c 293
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>gb|AY096544.1| Arabidopsis thaliana putative photosystem II polypeptide
           (At1g79040) mRNA, complete cds
          Length = 454

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 193 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacac 252
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 286 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 227

            
Query: 253 c 253
           |
Sbjct: 226 c 226
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>gb|AY070103.1| Arabidopsis thaliana putative photosystem II polypeptide protein
           (At1g79040) mRNA, complete cds
          Length = 645

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 193 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacac 252
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 336 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 277

            
Query: 253 c 253
           |
Sbjct: 276 c 276
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>emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS85ZA04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 193 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacac 252
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 319 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 260

            
Query: 253 c 253
           |
Sbjct: 259 c 259
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>emb|BX813377.1|CNS0AC7S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB13ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 193 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacac 252
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 319 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 260

            
Query: 253 c 253
           |
Sbjct: 259 c 259
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>emb|BX813545.1|CNS0AC1I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB23ZD11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 576

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 193 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacac 252
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 315 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 256

            
Query: 253 c 253
           |
Sbjct: 255 c 255
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>emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS56ZH04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 193 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacac 252
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 319 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 260

            
Query: 253 c 253
           |
Sbjct: 259 c 259
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>emb|BX818517.1|CNS0AB2P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZE09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 579

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 193 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacac 252
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 318 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 259

            
Query: 253 c 253
           |
Sbjct: 258 c 258
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>emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL27ZF07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 588

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 193 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacac 252
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 321 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 262

            
Query: 253 c 253
           |
Sbjct: 261 c 261
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>gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete sequence
          Length = 611

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 193 tgtatatagggctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacac 252
           |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 353 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 294

            
Query: 253 c 253
           |
Sbjct: 293 c 293
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>emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 60S ribosomal protein L24 (RL24
            gene)
          Length = 1310

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 193  tgtatatagggctgtacccatcaacatttgctccatacttgtcggcnaactggtaaacac 252
            |||| ||||| ||||| ||||| || || ||||||||||||||| |  ||| ||||||||
Sbjct: 1028 tgtaaataggactgtatccatcgacgttagctccatacttgtcgacgtacttgtaaacac 969

             
Query: 253  c 253
            |
Sbjct: 968  c 968
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>gb|AF035554.1|AF035554 Pisaster ochraceus protein kinase C-related kinase (PRK2) mRNA,
            partial cds
          Length = 2892

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 155  aacataaacgtcgccacttgg 175
            |||||||||||||||||||||
Sbjct: 1465 aacataaacgtcgccacttgg 1485
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 211     catcaacatttgctccatac 230
               ||||||||||||||||||||
Sbjct: 1176164 catcaacatttgctccatac 1176145
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>gb|AC132830.12| Mus musculus chromosome 1, clone RP24-566B6, complete sequence
          Length = 205300

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    cactcttctggtgtgtatat 199
              ||||||||||||||||||||
Sbjct: 143554 cactcttctggtgtgtatat 143573
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>gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, complete sequence
          Length = 153145

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   acacccttccccttggctac 268
             ||||||||||||||||||||
Sbjct: 35663 acacccttccccttggctac 35644
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>gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome 18, complete sequence
          Length = 155887

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   ccagcagaattccagcaaga 119
             ||||||||||||||||||||
Sbjct: 25861 ccagcagaattccagcaaga 25880
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>gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosome 18, complete
            sequence
          Length = 215137

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  ccagcagaattccagcaaga 119
            ||||||||||||||||||||
Sbjct: 7108 ccagcagaattccagcaaga 7089
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>emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section 19 of 21): from 3608981 to
              3809670
          Length = 200690

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     ttggtttgctgcacataggc 54
              ||||||||||||||||||||
Sbjct: 125094 ttggtttgctgcacataggc 125075
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>emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O] genes
          Length = 14047

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   ttggtttgctgcacataggc 54
            ||||||||||||||||||||
Sbjct: 1312 ttggtttgctgcacataggc 1331
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>gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, complete sequence
          Length = 187624

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   taaacacccttccccttggc 265
             ||||||||||||||||||||
Sbjct: 65315 taaacacccttccccttggc 65296
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>dbj|AK083570.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:D030046K16
           product:unclassifiable, full insert sequence
          Length = 2480

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 cactcttctggtgtgtatat 199
           ||||||||||||||||||||
Sbjct: 278 cactcttctggtgtgtatat 259
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>gb|L31936.1|BNABIF11G Brassica campestris ssp. pekinensis (clone bif11) photosystem II
           10kDa polypeptide mRNA, complete cds
          Length = 551

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 193 tgtatatagggctgtacccatcaacatttgctccatacttgtcg 236
           |||| ||||| ||||| |||||||| || || ||||||||||||
Sbjct: 301 tgtagataggactgtatccatcaacgttcgcaccatacttgtcg 258


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,213,288
Number of Sequences: 3902068
Number of extensions: 2213288
Number of successful extensions: 82336
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82238
Number of HSP's gapped (non-prelim): 91
length of query: 281
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 259
effective length of database: 17,147,199,772
effective search space: 4441124740948
effective search space used: 4441124740948
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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