ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20l01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC141888.4| Mus musculus BAC clone RP23-462H3 from chromosome... 42 0.58
2gb|AC138790.2| Mus musculus BAC clone RP23-292H23 from chromosom... 42 0.58
3dbj|AK155044.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 42 0.58
4dbj|AK057698.1| Homo sapiens cDNA FLJ33136 fis, clone UTERU1000065 40 2.3
5gb|AC012454.8| Homo sapiens BAC clone RP11-439L14 from 2, comple... 40 2.3
6ref|XM_419047.1| PREDICTED: Gallus gallus similar to Protein tyr... 38 9.1
7emb|AL133545.10| Human DNA sequence from clone RP11-386N14 on ch... 38 9.1
8emb|BX510317.5| Zebrafish DNA sequence from clone CH211-229G14 i... 38 9.1
9emb|AJ328884.1|HSA328884 Homo sapiens genomic sequence surroundi... 38 9.1

>gb|AC141888.4| Mus musculus BAC clone RP23-462H3 from chromosome 19, complete sequence
          Length = 185192

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 132    ggaaatgaagacatcgcaatacaag 156
              |||||||||||||| ||||||||||
Sbjct: 169623 ggaaatgaagacatagcaatacaag 169647



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>gb|AC138790.2| Mus musculus BAC clone RP23-292H23 from chromosome 19, complete sequence
          Length = 197765

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 132    ggaaatgaagacatcgcaatacaag 156
              |||||||||||||| ||||||||||
Sbjct: 178748 ggaaatgaagacatagcaatacaag 178724



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>dbj|AK155044.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630118H06
            product:solute carrier family 25, member 28, full insert
            sequence
          Length = 3725

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 132  ggaaatgaagacatcgcaatacaag 156
            |||||||||||||| ||||||||||
Sbjct: 1147 ggaaatgaagacatagcaatacaag 1171



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>dbj|AK057698.1| Homo sapiens cDNA FLJ33136 fis, clone UTERU1000065
          Length = 2929

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 16  gaaaccagtgctacaaatac 35
           ||||||||||||||||||||
Sbjct: 460 gaaaccagtgctacaaatac 441



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>gb|AC012454.8| Homo sapiens BAC clone RP11-439L14 from 2, complete sequence
          Length = 185512

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    gaaaccagtgctacaaatac 35
             ||||||||||||||||||||
Sbjct: 38980 gaaaccagtgctacaaatac 38961



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>ref|XM_419047.1| PREDICTED: Gallus gallus similar to Protein tyrosine phosphatase,
            non-receptor type 3 (Protein-tyrosine phosphatase H1)
            (PTP-H1) (LOC420963), mRNA
          Length = 2185

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 76   gtaaatgcaaagtagtcta 94
            |||||||||||||||||||
Sbjct: 1764 gtaaatgcaaagtagtcta 1782



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>emb|AL133545.10| Human DNA sequence from clone RP11-386N14 on chromosome X Contains the
              DUSP21 gene for dual specificity phosphatase 21, the 5' end
              of the UTX gene for ubiquitously transcribed
              tetratricopeptide repeat gene X chromosome and 3 CpG
              islands, complete sequence
          Length = 140717

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 137    tgaagacatcgcaatacaa 155
              |||||||||||||||||||
Sbjct: 119845 tgaagacatcgcaatacaa 119827



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>emb|BX510317.5| Zebrafish DNA sequence from clone CH211-229G14 in linkage group 9,
             complete sequence
          Length = 159458

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 131   gggaaatgaagacatcgcaatac 153
             |||||||||||||||| ||||||
Sbjct: 80982 gggaaatgaagacatcacaatac 81004



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>emb|AJ328884.1|HSA328884 Homo sapiens genomic sequence surrounding NotI site, clone NR1-PG8R
          Length = 1031

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 158 agtgagtcatcataggtga 176
           |||||||||||||||||||
Sbjct: 208 agtgagtcatcataggtga 226


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 979,974
Number of Sequences: 3902068
Number of extensions: 979974
Number of successful extensions: 57380
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57370
Number of HSP's gapped (non-prelim): 10
length of query: 184
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 162
effective length of database: 17,147,199,772
effective search space: 2777846363064
effective search space used: 2777846363064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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