Clone Name | rbasd20l01 |
---|---|
Clone Library Name | barley_pub |
>gb|AC141888.4| Mus musculus BAC clone RP23-462H3 from chromosome 19, complete sequence Length = 185192 Score = 42.1 bits (21), Expect = 0.58 Identities = 24/25 (96%) Strand = Plus / Plus Query: 132 ggaaatgaagacatcgcaatacaag 156 |||||||||||||| |||||||||| Sbjct: 169623 ggaaatgaagacatagcaatacaag 169647
>gb|AC138790.2| Mus musculus BAC clone RP23-292H23 from chromosome 19, complete sequence Length = 197765 Score = 42.1 bits (21), Expect = 0.58 Identities = 24/25 (96%) Strand = Plus / Minus Query: 132 ggaaatgaagacatcgcaatacaag 156 |||||||||||||| |||||||||| Sbjct: 178748 ggaaatgaagacatagcaatacaag 178724
>dbj|AK155044.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630118H06 product:solute carrier family 25, member 28, full insert sequence Length = 3725 Score = 42.1 bits (21), Expect = 0.58 Identities = 24/25 (96%) Strand = Plus / Plus Query: 132 ggaaatgaagacatcgcaatacaag 156 |||||||||||||| |||||||||| Sbjct: 1147 ggaaatgaagacatagcaatacaag 1171
>dbj|AK057698.1| Homo sapiens cDNA FLJ33136 fis, clone UTERU1000065 Length = 2929 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 gaaaccagtgctacaaatac 35 |||||||||||||||||||| Sbjct: 460 gaaaccagtgctacaaatac 441
>gb|AC012454.8| Homo sapiens BAC clone RP11-439L14 from 2, complete sequence Length = 185512 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 gaaaccagtgctacaaatac 35 |||||||||||||||||||| Sbjct: 38980 gaaaccagtgctacaaatac 38961
>ref|XM_419047.1| PREDICTED: Gallus gallus similar to Protein tyrosine phosphatase, non-receptor type 3 (Protein-tyrosine phosphatase H1) (PTP-H1) (LOC420963), mRNA Length = 2185 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 gtaaatgcaaagtagtcta 94 ||||||||||||||||||| Sbjct: 1764 gtaaatgcaaagtagtcta 1782
>emb|AL133545.10| Human DNA sequence from clone RP11-386N14 on chromosome X Contains the DUSP21 gene for dual specificity phosphatase 21, the 5' end of the UTX gene for ubiquitously transcribed tetratricopeptide repeat gene X chromosome and 3 CpG islands, complete sequence Length = 140717 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 137 tgaagacatcgcaatacaa 155 ||||||||||||||||||| Sbjct: 119845 tgaagacatcgcaatacaa 119827
>emb|BX510317.5| Zebrafish DNA sequence from clone CH211-229G14 in linkage group 9, complete sequence Length = 159458 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 131 gggaaatgaagacatcgcaatac 153 |||||||||||||||| |||||| Sbjct: 80982 gggaaatgaagacatcacaatac 81004
>emb|AJ328884.1|HSA328884 Homo sapiens genomic sequence surrounding NotI site, clone NR1-PG8R Length = 1031 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 158 agtgagtcatcataggtga 176 ||||||||||||||||||| Sbjct: 208 agtgagtcatcataggtga 226 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 979,974 Number of Sequences: 3902068 Number of extensions: 979974 Number of successful extensions: 57380 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57370 Number of HSP's gapped (non-prelim): 10 length of query: 184 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 162 effective length of database: 17,147,199,772 effective search space: 2777846363064 effective search space used: 2777846363064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)