Clone Information

BLAST Search Result

Clone Name	rbasd20k24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	TNNT_CAEEL (Q27371) Troponin T	34	0.33
2	FAR10_YEAST (Q06001) Factor arrest protein 10	33	0.74
3	REN3B_HUMAN (Q9BZI7) Regulator of nonsense transcripts 3B (Nonse...	33	0.74
4	RPOC_XANC5 (Q3BWZ0) DNA-directed RNA polymerase beta' chain (EC ...	33	0.97
5	RPOC_XANAC (Q8PNS9) DNA-directed RNA polymerase beta' chain (EC ...	33	0.97
6	RPOC_XYLFA (Q9PA87) DNA-directed RNA polymerase beta' chain (EC ...	33	0.97
7	POLG_CXA24 (P36290) Genome polyprotein [Contains: Coat protein V...	32	1.7
8	YR445_MIMIV (Q5UQP3) DnaJ-like protein R445	32	1.7
9	RPOC_XYLFT (Q87A33) DNA-directed RNA polymerase beta' chain (EC ...	32	1.7
10	POLG_POL2L (P06210) Genome polyprotein [Contains: Coat protein V...	32	1.7
11	POLG_POL3L (P03302) Genome polyprotein [Contains: Coat protein V...	32	1.7
12	POLG_POL32 (P06209) Genome polyprotein [Contains: Coat protein V...	32	1.7
13	POLG_CXA21 (P22055) Genome polyprotein [Contains: Coat protein V...	32	1.7
14	POLG_POL1S (P03301) Genome polyprotein [Contains: Coat protein V...	32	2.2
15	POLG_POL1M (P03300) Genome polyprotein [Contains: Coat protein V...	32	2.2
16	POLG_POL2W (P23069) Genome polyprotein [Contains: Coat protein V...	32	2.2
17	YSR4_CAEEL (Q09952) Hypothetical protein F59B10.4	31	2.8
18	RAD50_PYRFU (P58301) DNA double-strand break repair rad50 ATPase	31	2.8
19	RPOC_XANOR (Q8KTH8) DNA-directed RNA polymerase beta' chain (EC ...	31	2.8
20	RPOC_XANCP (Q8PC55) DNA-directed RNA polymerase beta' chain (EC ...	31	2.8
21	RPOC_XANC8 (Q4URD3) DNA-directed RNA polymerase beta' chain (EC ...	31	2.8
22	GIDA_BACHK (Q6HAF3) tRNA uridine 5-carboxymethylaminomethyl modi...	31	2.8
23	GIDA_BACAN (Q81JH3) tRNA uridine 5-carboxymethylaminomethyl modi...	31	2.8
24	FLOT2_CARAU (O42305) Flotillin-2 (Reggie-1) (REG-1)	30	4.8
25	IOVO_TADRA (P68157) Ovomucoid (Fragment)	30	4.8
26	IOVO_SARME (P68156) Ovomucoid (Fragment)	30	4.8
27	IOVO_NEOJU (P68155) Ovomucoid (Fragment)	30	4.8
28	IOVO_MERCU (P68154) Ovomucoid (Fragment)	30	4.8
29	IOVO_LOPSP (P68153) Ovomucoid (Fragment)	30	4.8
30	IOVO_DRONO (P05560) Ovomucoid (Fragment)	30	4.8
31	IOVO_CYACY (P68152) Ovomucoid (Fragment)	30	4.8
32	IOVO_COSCO (P05571) Ovomucoid (Fragment)	30	4.8
33	IOVO_CHLPI (P68151) Ovomucoid (Fragment)	30	4.8
34	IOVO_ANAPL (P68150) Ovomucoid (Fragment)	30	4.8
35	IOVO_ANACA (P68149) Ovomucoid (Fragment)	30	4.8
36	IOVO_ALOAE (P68148) Ovomucoid (Fragment)	30	4.8
37	IOVO_AIXSP (P68145) Ovomucoid (Fragment)	30	4.8
38	IOVO_AIXGA (P68144) Ovomucoid (Fragment)	30	4.8
39	IOVO_GALCH (P68379) Ovomucoid (Fragment)	30	6.3
40	IOVO_FULAT (P68378) Ovomucoid (Fragment)	30	6.3
41	ENGA_CHRVO (Q7NS92) GTP-binding protein engA	30	6.3
42	TCMO_SOYBN (Q42797) Trans-cinnamate 4-monooxygenase (EC 1.14.13....	30	6.3
43	PCSK5_BRACL (Q9NJ15) Proprotein convertase subtilisin/kexin type...	30	6.3
44	Y124_METJA (Q57588) Hypothetical protein MJ0124	30	8.2
45	UPF3_YEAST (P48412) Nonsense-mediated mRNA decay protein 3 (Up-f...	30	8.2
46	IOVO_TINMA (P52254) Ovomucoid (Fragment)	30	8.2
47	IOVO_CASCA (P62337) Ovomucoid (Fragment)	30	8.2
48	IOVO_CASBE (P62336) Ovomucoid (Fragment)	30	8.2

>TNNT_CAEEL (Q27371) Troponin T|
          Length = 405

 Score = 34.3 bits (77), Expect = 0.33
 Identities = 20/75 (26%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
 Frame = -2

Query: 650 SKMQSYEXTAEMQRQEIEMNERVLEDFEDW--IEEEKNEGMFFKSLGKVKKPQNNEEIKV 477
           +K+  YE    +++++IE   R L++ ++    E E++E  F +   +  + +  EE + 
Sbjct: 80  AKLLDYEQRRVLEKEQIEQELRELKEKQEKRRAEREEDERQFAERRRQDDERRRKEEDER 139

Query: 476 KAKIEAQKVREIAEE 432
           KAK +A+K+R+  E+
Sbjct: 140 KAKADAEKIRKNEEK 154

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>FAR10_YEAST (Q06001) Factor arrest protein 10|
          Length = 478

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = -2

Query: 590 ERVLEDFEDWIEEEKNEGMFFKSLGKVKKPQNNEEIK-VKAKIEAQKVREIAEESAGSK 417
           E+++E   + +++ + + MFFK   +VKK +NNE+ K ++ +IE  K R   E    S+
Sbjct: 348 EKIIEQNRNQVKQLERDHMFFKKSFEVKKRRNNEKQKSMEREIEDLKTRLEVERYKNSQ 406

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>REN3B_HUMAN (Q9BZI7) Regulator of nonsense transcripts 3B (Nonsense mRNA|
           reducing factor 3B) (Up-frameshift suppressor 3 homolog
           B) (hUpf3B) (hUpf3p-X)
          Length = 483

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = -2

Query: 632 EXTAEMQRQEIEMNERVLEDFEDWIEEEKNEGMFFKSLGKVKKPQNNEEIKVKAKIEAQK 453
           E   E +R+EIE   +  E+   W EEEK +    + L K+ +    +++K + KI+  +
Sbjct: 213 EKREERRRREIERKRQREEERRKWKEEEKRKRKDIEKLKKIDRIPERDKLKDEPKIKVHR 272

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>RPOC_XANC5 (Q3BWZ0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1404

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 13/49 (26%), Positives = 31/49 (63%)
 Frame = -2

Query: 560 IEEEKNEGMFFKSLGKVKKPQNNEEIKVKAKIEAQKVREIAEESAGSKT 414
           +E +K EGM F +  +VK+  +N  +++ AK++  ++ ++  E+ G ++
Sbjct: 517 LENKKGEGMVFANTSEVKRAYDNRVVELHAKVKV-RITQVDVEAGGKRS 564

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>RPOC_XANAC (Q8PNS9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1404

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 13/49 (26%), Positives = 31/49 (63%)
 Frame = -2

Query: 560 IEEEKNEGMFFKSLGKVKKPQNNEEIKVKAKIEAQKVREIAEESAGSKT 414
           +E +K EGM F +  +VK+  +N  +++ AK++  ++ ++  E+ G ++
Sbjct: 517 LENKKGEGMVFANTSEVKRAYDNRVVELHAKVKV-RITQVDVEAGGKRS 564

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>RPOC_XYLFA (Q9PA87) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1407

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 13/53 (24%), Positives = 33/53 (62%)
 Frame = -2

Query: 560 IEEEKNEGMFFKSLGKVKKPQNNEEIKVKAKIEAQKVREIAEESAGSKTRMNI 402
           +E +K EGM F +  ++K+  +N  +++ AK++  ++ EI  +  G +++ ++
Sbjct: 517 LENKKGEGMVFANTSELKRAYDNSVVELHAKVKV-RITEIETDDRGLRSKASL 568

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>POLG_CXA24 (P36290) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2213

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
 Frame = -2

Query: 491  EEIKVKAKIEAQKVREIAEESAGSKTRM-----NIYLALMAILGLTIANAVFATPEVEWR 327
            +E++ K K+E  K R I   S      M     N+Y A     G+   +AV   P++ W 
Sbjct: 1912 DELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVVTGSAVGCDPDLFWS 1971

Query: 326  KVAALGLIFIGLVAQVTYEQDISP 255
            K+  L    +       Y+  +SP
Sbjct: 1972 KIPVLMEEKLFAFDYTGYDASLSP 1995

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>YR445_MIMIV (Q5UQP3) DnaJ-like protein R445|
          Length = 368

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 14/55 (25%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
 Frame = -2

Query: 614 QRQEIEMNERVLEDFE---DWIEEEKNEGMFFKSLGKVKKPQNNEEIKVKAKIEA 459
           ++Q  E N+R++ + +   D+++ +K    F  S+G++K+P N +++  K +++A
Sbjct: 73  EKQRNEYNQRLIVEKQACSDYLKLKKRYNDFADSIGELKEPSNEQKLSFKEQMKA 127

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>RPOC_XYLFT (Q87A33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1407

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/71 (22%), Positives = 39/71 (54%)
 Frame = -2

Query: 560 IEEEKNEGMFFKSLGKVKKPQNNEEIKVKAKIEAQKVREIAEESAGSKTRMNIYLALMAI 381
           +E +K EGM F +  ++K+  +N  +++ AK++  ++ EI  +  G + + +      +I
Sbjct: 517 LENKKGEGMVFANTSELKRAYDNSVVELHAKVKV-RITEIETDDQGLRNKAS------SI 569

Query: 380 LGLTIANAVFA 348
           +  T+  A+ +
Sbjct: 570 VDTTVGRALLS 580

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>POLG_POL2L (P06210) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2206

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
 Frame = -2

Query: 491  EEIKVKAKIEAQKVREIAEESAGSKTRM-----NIYLALMAILGLTIANAVFATPEVEWR 327
            +E++ K K+E  K R I   S      M     N+Y A     G+   +AV   P++ W 
Sbjct: 1905 DELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVVTGSAVGCDPDLFWS 1964

Query: 326  KVAALGLIFIGLVAQVTYEQDISP 255
            K+  L    +       Y+  +SP
Sbjct: 1965 KIPVLMEEKLFAFDYTGYDASLSP 1988

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>POLG_POL3L (P03302) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2205

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
 Frame = -2

Query: 491  EEIKVKAKIEAQKVREIAEESAGSKTRM-----NIYLALMAILGLTIANAVFATPEVEWR 327
            +E++ K K+E  K R I   S      M     N+Y A     G+   +AV   P++ W 
Sbjct: 1904 DELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHRNPGVVTGSAVGCDPDLFWS 1963

Query: 326  KVAALGLIFIGLVAQVTYEQDISP 255
            K+  L    +       Y+  +SP
Sbjct: 1964 KIPVLMEEKLFAFDYTGYDASLSP 1987

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>POLG_POL32 (P06209) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2205

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
 Frame = -2

Query: 491  EEIKVKAKIEAQKVREIAEESAGSKTRM-----NIYLALMAILGLTIANAVFATPEVEWR 327
            +E++ K K+E  K R I   S      M     N+Y A     G+   +AV   P++ W 
Sbjct: 1904 DELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVVTGSAVGCDPDLFWS 1963

Query: 326  KVAALGLIFIGLVAQVTYEQDISP 255
            K+  L    +       Y+  +SP
Sbjct: 1964 KIPVLMEEKLFAFDYTGYDASLSP 1987

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>POLG_CXA21 (P22055) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2205

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
 Frame = -2

Query: 491  EEIKVKAKIEAQKVREIAEESAGSKTRM-----NIYLALMAILGLTIANAVFATPEVEWR 327
            +E++ K K+E  K R I   S      M     N+Y A     G+   +AV   P++ W 
Sbjct: 1904 DELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVVTGSAVGCDPDLFWS 1963

Query: 326  KVAALGLIFIGLVAQVTYEQDISP 255
            K+  L    +       Y+  +SP
Sbjct: 1964 KIPVLMEEKLFAFDYTGYDASLSP 1987

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>POLG_POL1S (P03301) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2208

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
 Frame = -2

Query: 491  EEIKVKAKIEAQKVREIAEESAGSKTRM-----NIYLALMAILGLTIANAVFATPEVEWR 327
            +E++ K K+E  K R I   S      M     N+Y A     G+   +AV   P++ W 
Sbjct: 1907 DELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWS 1966

Query: 326  KVAALGLIFIGLVAQVTYEQDISP 255
            K+  L    +       Y+  +SP
Sbjct: 1967 KIPVLMEEKLFAFDYTGYDASLSP 1990

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>POLG_POL1M (P03300) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2208

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
 Frame = -2

Query: 491  EEIKVKAKIEAQKVREIAEESAGSKTRM-----NIYLALMAILGLTIANAVFATPEVEWR 327
            +E++ K K+E  K R I   S      M     N+Y A     G+   +AV   P++ W 
Sbjct: 1907 DELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWS 1966

Query: 326  KVAALGLIFIGLVAQVTYEQDISP 255
            K+  L    +       Y+  +SP
Sbjct: 1967 KIPVLMEEKLFAFDYTGYDASLSP 1990

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>POLG_POL2W (P23069) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome
          Length = 2204

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = -2

Query: 491  EEIKVKAKIEAQKVREIAEESAGSKTRM-----NIYLALMAILGLTIANAVFATPEVEWR 327
            +E++ K K+E  K R I   S      M     N+Y A     G+   +AV   P++ W 
Sbjct: 1905 DELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVVTGSAVGCDPDLFWS 1964

Query: 326  KVAAL 312
            K+  L
Sbjct: 1965 KIPVL 1969

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>YSR4_CAEEL (Q09952) Hypothetical protein F59B10.4|
          Length = 267

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 410 MNIYLALMAILGLTIANAVFATPEVEWRKVAALGLIFIGLVAQVTYE 270
           +N  L L+A+LG+    +    P + W+ V  L L+F+G ++   Y+
Sbjct: 76  VNFSLVLLALLGINSKVSSMILPALVWKCVLLLFLLFLGCISVDAYQ 122

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>RAD50_PYRFU (P58301) DNA double-strand break repair rad50 ATPase|
          Length = 882

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -2

Query: 620 EMQRQEIEMNERVLE-DFEDWIEEEKNEGMFFKSLGKVKKPQNNEEIKVKAKIEAQKVRE 444
           E+ ++EI   +  LE  FE+  E E +     K L ++K+  N EE K K + + +  +E
Sbjct: 618 EITQREIAKAKETLEMSFEELAEVEADIERIEKKLSQLKQKYNEEEYKKKREEKEELEKE 677

Query: 443 IAEESAGSK 417
           +A   A  K
Sbjct: 678 LARLEAQKK 686

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>RPOC_XANOR (Q8KTH8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1405

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = -2

Query: 560 IEEEKNEGMFFKSLGKVKKPQNNEEIKVKAKIEAQKVREIAEESAGSKT 414
           +E +K EGM F +  +VK+  +N  +++ AK++ +  +   +   G +T
Sbjct: 517 LENKKGEGMVFANTSEVKRAYDNRVVELHAKVKVRITQVDVDAVDGKRT 565

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>RPOC_XANCP (Q8PC55) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1405

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = -2

Query: 560 IEEEKNEGMFFKSLGKVKKPQNNEEIKVKAKIEAQKVREIAEESAGSKT 414
           +E +K EGM F +  +VK+  +N  +++ AK++ +  +   +   G +T
Sbjct: 517 LENKKGEGMVFANTSEVKRAYDNRVVELHAKVKVRITQVDVDTVDGKRT 565

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>RPOC_XANC8 (Q4URD3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1405

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = -2

Query: 560 IEEEKNEGMFFKSLGKVKKPQNNEEIKVKAKIEAQKVREIAEESAGSKT 414
           +E +K EGM F +  +VK+  +N  +++ AK++ +  +   +   G +T
Sbjct: 517 LENKKGEGMVFANTSEVKRAYDNRVVELHAKVKVRITQVDVDTVDGKRT 565

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>GIDA_BACHK (Q6HAF3) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 629

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = -2

Query: 638 SYEXTAEMQRQEIEMNERVLEDFEDWIEEEKNEGMFFKSLGKVKKPQNNEEIKVKAKIEA 459
           +YE    +   E+E+++ V E  E  I   K EG   KSL +V++ +  E  K+   I+ 
Sbjct: 519 TYEHIHLLVPSEVELSDEVKEQVEIQI---KYEGYIEKSLQQVERMKKMENKKIPVDIDY 575

Query: 458 QKVREIAEES 429
             +  +A E+
Sbjct: 576 DAISSLASEA 585

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>GIDA_BACAN (Q81JH3) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 629

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = -2

Query: 638 SYEXTAEMQRQEIEMNERVLEDFEDWIEEEKNEGMFFKSLGKVKKPQNNEEIKVKAKIEA 459
           +YE    +   E+E+++ V E  E  I   K EG   KSL +V++ +  E  K+   I+ 
Sbjct: 519 TYEHIHLLVPSEVELSDEVKEQVEIQI---KYEGYIEKSLQQVERMKKMENKKIPVDIDY 575

Query: 458 QKVREIAEES 429
             +  +A E+
Sbjct: 576 DAISSLASEA 585

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>FLOT2_CARAU (O42305) Flotillin-2 (Reggie-1) (REG-1)|
          Length = 428

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
 Frame = -2

Query: 638 SYEXTAEMQRQEIEMNERVLEDFEDW----IEEEKNEGMFFKSLGKVKKPQNNEEIKVKA 471
           +YE  A  ++Q+I + E  +E  +      IEE++ E    + +  VK+P   E  K++ 
Sbjct: 240 AYELEAAKEQQKIRLEEIEIEVVQRKKQISIEEKEIERTEKELIATVKRPAEAEAYKMQQ 299

Query: 470 KIEAQKVREIAEESAGSK 417
             E QK++++    A S+
Sbjct: 300 LAEGQKLKKVLIAQAESE 317

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>IOVO_TADRA (P68157) Ovomucoid (Fragment)|
          Length = 54

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 444 DCRGECGVKNSDEYLPCTHGDTRSYNRKCRLCN 346
           DC G      + EY+P    D ++Y  KC  CN
Sbjct: 5   DCSGYPKPACTMEYMPLCGSDNKTYGNKCNFCN 37

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>IOVO_SARME (P68156) Ovomucoid (Fragment)|
          Length = 54

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 444 DCRGECGVKNSDEYLPCTHGDTRSYNRKCRLCN 346
           DC G      + EY+P    D ++Y  KC  CN
Sbjct: 5   DCSGYPKPACTMEYMPLCGSDNKTYGNKCNFCN 37

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>IOVO_NEOJU (P68155) Ovomucoid (Fragment)|
          Length = 54

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 444 DCRGECGVKNSDEYLPCTHGDTRSYNRKCRLCN 346
           DC G      + EY+P    D ++Y  KC  CN
Sbjct: 5   DCSGYPKPACTMEYMPLCGSDNKTYGNKCNFCN 37

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>IOVO_MERCU (P68154) Ovomucoid (Fragment)|
          Length = 54

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 444 DCRGECGVKNSDEYLPCTHGDTRSYNRKCRLCN 346
           DC G      + EY+P    D ++Y  KC  CN
Sbjct: 5   DCSGYPKPACTMEYMPLCGSDNKTYGNKCNFCN 37

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>IOVO_LOPSP (P68153) Ovomucoid (Fragment)|
          Length = 54

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 444 DCRGECGVKNSDEYLPCTHGDTRSYNRKCRLCN 346
           DC G      + EY+P    D ++Y  KC  CN
Sbjct: 5   DCSGYPKPACTMEYMPLCGSDNKTYGNKCNFCN 37

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>IOVO_DRONO (P05560) Ovomucoid (Fragment)|
          Length = 54

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 408 EYLPCTHGDTRSYNRKCRLCN 346
           EY+P    D+++YN KC  CN
Sbjct: 17  EYMPLCGSDSKTYNNKCDFCN 37

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>IOVO_CYACY (P68152) Ovomucoid (Fragment)|
          Length = 54

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 444 DCRGECGVKNSDEYLPCTHGDTRSYNRKCRLCN 346
           DC G      + EY+P    D ++Y  KC  CN
Sbjct: 5   DCSGYPKPACTMEYMPLCGSDNKTYGNKCNFCN 37

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>IOVO_COSCO (P05571) Ovomucoid (Fragment)|
          Length = 54

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 444 DCRGECGVKNSDEYLPCTHGDTRSYNRKCRLCN 346
           DC G      + EY+P    D ++Y  KC  CN
Sbjct: 5   DCSGYPKPACTMEYMPLCGSDNKTYGNKCNFCN 37

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>IOVO_CHLPI (P68151) Ovomucoid (Fragment)|
          Length = 54

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 444 DCRGECGVKNSDEYLPCTHGDTRSYNRKCRLCN 346
           DC G      + EY+P    D ++Y  KC  CN
Sbjct: 5   DCSGYPKPACTMEYMPLCGSDNKTYGNKCNFCN 37

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>IOVO_ANAPL (P68150) Ovomucoid (Fragment)|
          Length = 54

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 444 DCRGECGVKNSDEYLPCTHGDTRSYNRKCRLCN 346
           DC G      + EY+P    D ++Y  KC  CN
Sbjct: 5   DCSGYPKPACTMEYMPLCGSDNKTYGNKCNFCN 37

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>IOVO_ANACA (P68149) Ovomucoid (Fragment)|
          Length = 54

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 444 DCRGECGVKNSDEYLPCTHGDTRSYNRKCRLCN 346
           DC G      + EY+P    D ++Y  KC  CN
Sbjct: 5   DCSGYPKPACTMEYMPLCGSDNKTYGNKCNFCN 37

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>IOVO_ALOAE (P68148) Ovomucoid (Fragment)|
          Length = 54

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 444 DCRGECGVKNSDEYLPCTHGDTRSYNRKCRLCN 346
           DC G      + EY+P    D ++Y  KC  CN
Sbjct: 5   DCSGYPKPACTMEYMPLCGSDNKTYGNKCNFCN 37

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>IOVO_AIXSP (P68145) Ovomucoid (Fragment)|
          Length = 54

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 444 DCRGECGVKNSDEYLPCTHGDTRSYNRKCRLCN 346
           DC G      + EY+P    D ++Y  KC  CN
Sbjct: 5   DCSGYPKPACTMEYMPLCGSDNKTYGNKCNFCN 37

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>IOVO_AIXGA (P68144) Ovomucoid (Fragment)|
          Length = 54

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 444 DCRGECGVKNSDEYLPCTHGDTRSYNRKCRLCN 346
           DC G      + EY+P    D ++Y  KC  CN
Sbjct: 5   DCSGYPKPACTMEYMPLCGSDNKTYGNKCNFCN 37

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>IOVO_GALCH (P68379) Ovomucoid (Fragment)|
          Length = 54

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 444 DCRGECGVKNSDEYLPCTHGDTRSYNRKCRLCN 346
           DC G      S EY+P    D ++Y+ KC  CN
Sbjct: 5   DCSGYPQPACSLEYVPFCGSDNKTYSNKCDFCN 37

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>IOVO_FULAT (P68378) Ovomucoid (Fragment)|
          Length = 54

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 444 DCRGECGVKNSDEYLPCTHGDTRSYNRKCRLCN 346
           DC G      S EY+P    D ++Y+ KC  CN
Sbjct: 5   DCSGYPQPACSLEYVPFCGSDNKTYSNKCDFCN 37

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>ENGA_CHRVO (Q7NS92) GTP-binding protein engA|
          Length = 469

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 24/68 (35%), Positives = 37/68 (54%)
 Frame = -2

Query: 599 EMNERVLEDFEDWIEEEKNEGMFFKSLGKVKKPQNNEEIKVKAKIEAQKVREIAEESAGS 420
           E+ E VLE F D +EEE +    F  +G   +P   +   V A +  ++V  IA + AG+
Sbjct: 154 ELMELVLEGFPDEVEEEDSRHPKFAVIG---RPNVGKSTLVNAILGEERV--IAFDQAGT 208

Query: 419 KTRMNIYL 396
            TR +IY+
Sbjct: 209 -TRDSIYI 215

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>TCMO_SOYBN (Q42797) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic|
           acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome
           P450 73)
          Length = 506

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -2

Query: 599 EMNERVLEDFEDWIEEEKNEGMFFKSLGKVKKPQNNEEIK--VKAKIEAQKVREIAEES 429
           E+ E  L+ F+D+  +E+      K LG  K   NN E+K  +   ++AQ+  EI E++
Sbjct: 244 EVKETRLKLFKDYFVDER------KKLGSTKSTNNNNELKCAIDHILDAQRKGEINEDN 296

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>PCSK5_BRACL (Q9NJ15) Proprotein convertase subtilisin/kexin type 5 precursor (EC|
            3.4.21.-) (Proprotein convertase PC6-like) (aPC6)
          Length = 1696

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -1

Query: 504  TSKQ*GNQGEGQDRSTEGQRDCRGECGVKNSDEYLPCTHGDTRSYNRKC-RLCNTRGGME 328
            TS + G  G  + +  +    C+ +C    +D+ L C H DT  Y+  C + C  R   E
Sbjct: 860  TSCEDGEYGTEEGKCEDCNIICK-KCNGSQADQCLEC-HHDTNLYDTTCVQYCGNRRYPE 917

Query: 327  EGCCSGSNFHWPGCSG 280
             G C   +    GC G
Sbjct: 918  NGECHPCHPSCLGCIG 933

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>Y124_METJA (Q57588) Hypothetical protein MJ0124|
          Length = 1075

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 13/62 (20%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = -2

Query: 617  MQRQEIEMNERVLEDFE----DWIEEEKNEGMFFKSLGKVKKPQNNEEIKVKAKIEAQKV 450
            + +Q   + + +LE  E    DWI +  ++ ++  ++  + + +NN + K+K K   +++
Sbjct: 918  LDKQHDPIYKEILERLERLRRDWIMKRIDDKIYLNAIKNLMELKNNYDKKIKGKSSIERI 977

Query: 449  RE 444
            +E
Sbjct: 978  KE 979

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>UPF3_YEAST (P48412) Nonsense-mediated mRNA decay protein 3 (Up-frameshift|
           suppressor 3)
          Length = 387

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = -2

Query: 641 QSYEXTAEMQRQEIEMNERVLEDFEDWIEEEKNEGMFFKSLG---KVKKPQNNEEIKVKA 471
           + +  + E++ +  E  ERVL +     ++ KN+    K+     K K+ + + +I  K 
Sbjct: 240 KEFSKSIELENKIAERTERVLTELVGTGDKVKNKNKKKKNKNAKKKFKEEEASAKIPKKK 299

Query: 470 KIEAQKVREIAEESAGSKTR 411
           +   +K RE  E+S  SKT+
Sbjct: 300 RNRGKKKRENREKSTISKTK 319

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>IOVO_TINMA (P52254) Ovomucoid (Fragment)|
          Length = 51

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 444 DCRGECGVKNSDEYLPCTHGDTRSYNRKCRLCN 346
           DC G      + EY P    D ++Y+ KC  CN
Sbjct: 4   DCSGYPKPACTAEYFPLCGSDNQTYSNKCAFCN 36

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>IOVO_CASCA (P62337) Ovomucoid (Fragment)|
          Length = 54

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 414 SDEYLPCTHGDTRSYNRKCRLCN 346
           S EY+P    D+++YN KC  C+
Sbjct: 15  SPEYMPLCGSDSKTYNNKCDFCS 37

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>IOVO_CASBE (P62336) Ovomucoid (Fragment)|
          Length = 54

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 414 SDEYLPCTHGDTRSYNRKCRLCN 346
           S EY+P    D+++YN KC  C+
Sbjct: 15  SPEYMPLCGSDSKTYNNKCDFCS 37


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,763,243
Number of Sequences: 219361
Number of extensions: 1689443
Number of successful extensions: 5783
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 5471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5778
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result