ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20k16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KR151_CAPHI (Q6R645) Keratin-associated protein 15-1 (Keratin-as... 32 0.87
2HSP71_PICAN (P53421) Heat-shock protein 70 1 (HSP72) 30 5.6
3MT3_BOVIN (P37359) Metallothionein-3 (MT-3) (Metallothionein-III... 29 9.6

>KR151_CAPHI (Q6R645) Keratin-associated protein 15-1 (Keratin-associated|
           protein 15.1)
          Length = 136

 Score = 32.3 bits (72), Expect = 0.87
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = +2

Query: 110 PCQSHYTSALKSGNIGQTKGKYIYMSTSVQVTDASKYCHHRQNRCSPTMTSS 265
           PCQ+ YT +L SGNIG   G +   ST  Q            N CSPT  SS
Sbjct: 85  PCQTIYTGSLGSGNIG--LGSFGCGSTGFQSLGCG------SNFCSPTYVSS 128



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>HSP71_PICAN (P53421) Heat-shock protein 70 1 (HSP72)|
          Length = 644

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 500 HYGGRDFYDSSPHKQANESSRNYKEDNTDGSLATR 396
           H GG DF +   +  ANE  R YK+D T    A R
Sbjct: 226 HLGGEDFDNRLVNHFANEFKRKYKKDLTTNQRALR 260



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>MT3_BOVIN (P37359) Metallothionein-3 (MT-3) (Metallothionein-III) (MT-III)|
           (Growth inhibitory factor) (GIF)
          Length = 68

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 45  SDPVRCSCKRAATFRRTCFCCCPA 116
           SDP +C     A+ +++C  CCPA
Sbjct: 17  SDPCKCEGCTCASCKKSCCSCCPA 40


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,991,552
Number of Sequences: 219361
Number of extensions: 1688693
Number of successful extensions: 4610
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4608
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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