ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20k12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_184449.2| Oryza sativa (japonica cultivar-group), mRNA 258 2e-65
2dbj|AK103127.1| Oryza sativa (japonica cultivar-group) cDNA clon... 258 2e-65
3dbj|AK058679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 258 2e-65
4dbj|D78504.1| Oryza sativa (japonica cultivar-group) mRNA, simil... 258 2e-65
5gb|BT019160.1| Zea mays clone Contig824.F mRNA sequence 180 3e-42
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
7dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
8dbj|AB006788.1| Oryza sativa (japonica cultivar-group) gene for ... 165 2e-37
9dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
10gb|AY530729.1| Zea mays Tha8 (tha8) gene, complete cds 105 1e-19
11gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 46 0.12
12ref|XM_510480.1| PREDICTED: Pan troglodytes LOC453513 (LOC453513... 42 1.8
13gb|AC007367.3| Homo sapiens BAC clone RP11-518G12 from 2, comple... 42 1.8
14ref|XM_238544.3| PREDICTED: Rattus norvegicus similar to ubiquit... 42 1.8
15gb|BC086832.1| Danio rerio zgc:103559, mRNA (cDNA clone MGC:1035... 40 7.1
16gb|BC082247.1| Homo sapiens ribosomal protein L19, mRNA (cDNA cl... 40 7.1
17ref|XM_956860.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.1
18ref|XM_329775.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.1
19gb|BC065824.1| Homo sapiens similar to ubiquitin-associated prot... 40 7.1
20gb|BC052607.1| Homo sapiens ribosomal protein L19, mRNA (cDNA cl... 40 7.1
21gb|BC062547.1| Homo sapiens cDNA clone IMAGE:6252627, **** WARNI... 40 7.1
22emb|AL008720.1|HS343C1 Human DNA sequence from clone CTA-343C1 o... 40 7.1
23gb|AY956334.1| Streptomyces aureofaciens strain CCM3239 auricin ... 40 7.1
24emb|CR749500.1| Homo sapiens mRNA; cDNA DKFZp686J168 (from clone... 40 7.1
25dbj|AK023802.1| Homo sapiens cDNA FLJ13740 fis, clone PLACE3000199 40 7.1
26dbj|AK156239.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 7.1
27ref|XM_940509.1| PREDICTED: Homo sapiens similar to ubiquitin-as... 40 7.1
28ref|XM_372574.4| PREDICTED: Homo sapiens similar to ubiquitin-as... 40 7.1
29gb|AC013553.14| Homo sapiens chromosome 15, clone RP11-325L12, c... 40 7.1
30ref|XM_579893.1| PREDICTED: Rattus norvegicus LOC498958 (LOC4989... 40 7.1
31ref|NM_001008599.1| Danio rerio zgc:103559 (zgc:103559), mRNA 40 7.1
32gb|AC134250.4| Mus musculus BAC clone RP23-406L17 from chromosom... 40 7.1
33emb|CR556706.7| Mouse DNA sequence from clone RP23-105E20 on chr... 40 7.1
34gb|DQ206589.1| Aphrocallistes vastus isolate TOA53 DNA replicati... 40 7.1
35gb|U43400.1|HHU43400 Human herpesvirus-7 (HHV7) JI, complete vir... 40 7.1
36gb|AF037218.1| Human herpesvirus 7 strain RK, complete genome 40 7.1
37emb|AL359606.1|HSM802721 Homo sapiens mRNA; cDNA DKFZp547K056 (f... 40 7.1 
>ref|NM_184449.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1767

 Score =  258 bits (130), Expect = 2e-65
 Identities = 232/266 (87%)
 Strand = Plus / Minus

                                                                        
Query: 234  tcgaggccgtaatcctcaccgaagtatttgtcgaccagcccattggccatgttcctcatc 293
            |||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||||
Sbjct: 1628 tcgaggccataatcctcaccgaagtattcgtcgaccaaaccattggccatgttcctcatc 1569

                                                                        
Query: 294  gcctcgttctcatggaactggaacctctccatggcctcgatgccgtcccccctctccaca 353
              ||||||||| ||||| || ||||||||||||||||| ||||||||| || | ||||||
Sbjct: 1568 tgctcgttctcgtggaattgaaacctctccatggcctcaatgccgtcctccatttccaca 1509

                                                                        
Query: 354  agctgtggaccctgtccattgggataccccctcatcaccagttccaggaactgaagaccg 413
            |||| ||| || ||   ||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 1508 agctttgggccttgcttattgggataccccctcatcaccagttctaggaactgaagacca 1449

                                                                        
Query: 414  agtcttgcgctctctatatcagcagacctgaccaaatttatgaatcctgggagggctcca 473
            || | |||| | |||| |||||||||||||||||| | ||| |||||||| |||||||||
Sbjct: 1448 agccctgcggtatctacatcagcagacctgaccaagtgtataaatcctggaagggctcca 1389

                                      
Query: 474  ccatttatgatcgagactagatgttc 499
            |||| || ||| | ||||||||||||
Sbjct: 1388 ccatctacgatagcgactagatgttc 1363
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>dbj|AK103127.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119N19, full
            insert sequence
          Length = 1867

 Score =  258 bits (130), Expect = 2e-65
 Identities = 232/266 (87%)
 Strand = Plus / Minus

                                                                        
Query: 234  tcgaggccgtaatcctcaccgaagtatttgtcgaccagcccattggccatgttcctcatc 293
            |||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||||
Sbjct: 1655 tcgaggccataatcctcaccgaagtattcgtcgaccaaaccattggccatgttcctcatc 1596

                                                                        
Query: 294  gcctcgttctcatggaactggaacctctccatggcctcgatgccgtcccccctctccaca 353
              ||||||||| ||||| || ||||||||||||||||| ||||||||| || | ||||||
Sbjct: 1595 tgctcgttctcgtggaattgaaacctctccatggcctcaatgccgtcctccatttccaca 1536

                                                                        
Query: 354  agctgtggaccctgtccattgggataccccctcatcaccagttccaggaactgaagaccg 413
            |||| ||| || ||   ||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 1535 agctttgggccttgcttattgggataccccctcatcaccagttctaggaactgaagacca 1476

                                                                        
Query: 414  agtcttgcgctctctatatcagcagacctgaccaaatttatgaatcctgggagggctcca 473
            || | |||| | |||| |||||||||||||||||| | ||| |||||||| |||||||||
Sbjct: 1475 agccctgcggtatctacatcagcagacctgaccaagtgtataaatcctggaagggctcca 1416

                                      
Query: 474  ccatttatgatcgagactagatgttc 499
            |||| || ||| | ||||||||||||
Sbjct: 1415 ccatctacgatagcgactagatgttc 1390
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>dbj|AK058679.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H12, full
            insert sequence
          Length = 1766

 Score =  258 bits (130), Expect = 2e-65
 Identities = 232/266 (87%)
 Strand = Plus / Minus

                                                                        
Query: 234  tcgaggccgtaatcctcaccgaagtatttgtcgaccagcccattggccatgttcctcatc 293
            |||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||||
Sbjct: 1627 tcgaggccataatcctcaccgaagtattcgtcgaccaaaccattggccatgttcctcatc 1568

                                                                        
Query: 294  gcctcgttctcatggaactggaacctctccatggcctcgatgccgtcccccctctccaca 353
              ||||||||| ||||| || ||||||||||||||||| ||||||||| || | ||||||
Sbjct: 1567 tgctcgttctcgtggaattgaaacctctccatggcctcaatgccgtcctccatttccaca 1508

                                                                        
Query: 354  agctgtggaccctgtccattgggataccccctcatcaccagttccaggaactgaagaccg 413
            |||| ||| || ||   ||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 1507 agctttgggccttgcttattgggataccccctcatcaccagttctaggaactgaagacca 1448

                                                                        
Query: 414  agtcttgcgctctctatatcagcagacctgaccaaatttatgaatcctgggagggctcca 473
            || | |||| | |||| |||||||||||||||||| | ||| |||||||| |||||||||
Sbjct: 1447 agccctgcggtatctacatcagcagacctgaccaagtgtataaatcctggaagggctcca 1388

                                      
Query: 474  ccatttatgatcgagactagatgttc 499
            |||| || ||| | ||||||||||||
Sbjct: 1387 ccatctacgatagcgactagatgttc 1362
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>dbj|D78504.1| Oryza sativa (japonica cultivar-group) mRNA, similar to yeast SRP1,
            complete cds
          Length = 1751

 Score =  258 bits (130), Expect = 2e-65
 Identities = 232/266 (87%)
 Strand = Plus / Minus

                                                                        
Query: 234  tcgaggccgtaatcctcaccgaagtatttgtcgaccagcccattggccatgttcctcatc 293
            |||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||||
Sbjct: 1603 tcgaggccataatcctcaccgaagtattcgtcgaccaaaccattggccatgttcctcatc 1544

                                                                        
Query: 294  gcctcgttctcatggaactggaacctctccatggcctcgatgccgtcccccctctccaca 353
              ||||||||| ||||| || ||||||||||||||||| ||||||||| || | ||||||
Sbjct: 1543 tgctcgttctcgtggaattgaaacctctccatggcctcaatgccgtcctccatttccaca 1484

                                                                        
Query: 354  agctgtggaccctgtccattgggataccccctcatcaccagttccaggaactgaagaccg 413
            |||| ||| || ||   ||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 1483 agctttgggccttgcttattgggataccccctcatcaccagttctaggaactgaagacca 1424

                                                                        
Query: 414  agtcttgcgctctctatatcagcagacctgaccaaatttatgaatcctgggagggctcca 473
            || | |||| | |||| |||||||||||||||||| | ||| |||||||| |||||||||
Sbjct: 1423 agccctgcggtatctacatcagcagacctgaccaagtgtataaatcctggaagggctcca 1364

                                      
Query: 474  ccatttatgatcgagactagatgttc 499
            |||| || ||| | ||||||||||||
Sbjct: 1363 ccatctacgatagcgactagatgttc 1338
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>gb|BT019160.1| Zea mays clone Contig824.F mRNA sequence
          Length = 1182

 Score =  180 bits (91), Expect = 3e-42
 Identities = 190/223 (85%)
 Strand = Plus / Minus

                                                                       
Query: 255 aagtatttgtcgaccagcccattggccatgttcctcatcgcctcgttctcatggaactgg 314
           |||||||| || ||||  ||||| ||||| |||||||||  |||||||||||||||||||
Sbjct: 841 aagtatttatcaaccaaaccattcgccatattcctcatcatctcgttctcatggaactgg 782

                                                                       
Query: 315 aacctctccatggcctcgatgccgtcccccctctccacaagctgtggaccctgtccattg 374
           ||||||||||||||||| ||||||||| |  ||||||| |||| ||| ||||| |  |  
Sbjct: 781 aacctctccatggcctcaatgccgtcctctgtctccacgagctttgggccctggctgtca 722

                                                                       
Query: 375 ggataccccctcatcaccagttccaggaactgaagaccgagtcttgcgctctctatatca 434
           || || || |||||||||||||||||||||||||| || ||||| || ||||||||||| 
Sbjct: 721 gggtatcctctcatcaccagttccaggaactgaagcccaagtctcgcactctctatatcg 662

                                                      
Query: 435 gcagacctgaccaaatttatgaatcctgggagggctccaccat 477
           || ||||| ||||||||||| |||||||| |||||||| ||||
Sbjct: 661 gccgacctcaccaaatttataaatcctggaagggctcccccat 619
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  165 bits (83), Expect = 2e-37
 Identities = 140/159 (88%)
 Strand = Plus / Minus

                                                                           
Query: 234     tcgaggccgtaatcctcaccgaagtatttgtcgaccagcccattggccatgttcctcatc 293
               |||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||||
Sbjct: 3050982 tcgaggccataatcctcaccgaagtattcgtcgaccaaaccattggccatgttcctcatc 3050923

                                                                           
Query: 294     gcctcgttctcatggaactggaacctctccatggcctcgatgccgtcccccctctccaca 353
                 ||||||||| ||||| || ||||||||||||||||| ||||||||| || | ||||||
Sbjct: 3050922 tgctcgttctcgtggaattgaaacctctccatggcctcaatgccgtcctccatttccaca 3050863

                                                      
Query: 354     agctgtggaccctgtccattgggataccccctcatcacc 392
               |||| ||| || ||   ||||||||||||||||||||||
Sbjct: 3050862 agctttgggccttgcttattgggataccccctcatcacc 3050824



 Score =  103 bits (52), Expect = 6e-19
 Identities = 97/112 (86%)
 Strand = Plus / Minus

                                                                           
Query: 388     tcaccagttccaggaactgaagaccgagtcttgcgctctctatatcagcagacctgacca 447
               |||||||||| |||||||||||||| || | |||| | |||| |||||||||||||||||
Sbjct: 3050688 tcaccagttctaggaactgaagaccaagccctgcggtatctacatcagcagacctgacca 3050629

                                                                   
Query: 448     aatttatgaatcctgggagggctccaccatttatgatcgagactagatgttc 499
               | | ||| |||||||| ||||||||||||| || ||| | ||||||||||||
Sbjct: 3050628 agtgtataaatcctggaagggctccaccatctacgatagcgactagatgttc 3050577
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>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0011G08
          Length = 139490

 Score =  165 bits (83), Expect = 2e-37
 Identities = 140/159 (88%)
 Strand = Plus / Minus

                                                                          
Query: 234    tcgaggccgtaatcctcaccgaagtatttgtcgaccagcccattggccatgttcctcatc 293
              |||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||||
Sbjct: 132499 tcgaggccataatcctcaccgaagtattcgtcgaccaaaccattggccatgttcctcatc 132440

                                                                          
Query: 294    gcctcgttctcatggaactggaacctctccatggcctcgatgccgtcccccctctccaca 353
                ||||||||| ||||| || ||||||||||||||||| ||||||||| || | ||||||
Sbjct: 132439 tgctcgttctcgtggaattgaaacctctccatggcctcaatgccgtcctccatttccaca 132380

                                                     
Query: 354    agctgtggaccctgtccattgggataccccctcatcacc 392
              |||| ||| || ||   ||||||||||||||||||||||
Sbjct: 132379 agctttgggccttgcttattgggataccccctcatcacc 132341



 Score =  103 bits (52), Expect = 6e-19
 Identities = 97/112 (86%)
 Strand = Plus / Minus

                                                                          
Query: 388    tcaccagttccaggaactgaagaccgagtcttgcgctctctatatcagcagacctgacca 447
              |||||||||| |||||||||||||| || | |||| | |||| |||||||||||||||||
Sbjct: 132205 tcaccagttctaggaactgaagaccaagccctgcggtatctacatcagcagacctgacca 132146

                                                                  
Query: 448    aatttatgaatcctgggagggctccaccatttatgatcgagactagatgttc 499
              | | ||| |||||||| ||||||||||||| || ||| | ||||||||||||
Sbjct: 132145 agtgtataaatcctggaagggctccaccatctacgatagcgactagatgttc 132094
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>dbj|AB006788.1| Oryza sativa (japonica cultivar-group) gene for importin alpha,
            complete cds
          Length = 5125

 Score =  165 bits (83), Expect = 2e-37
 Identities = 140/159 (88%)
 Strand = Plus / Minus

                                                                        
Query: 234  tcgaggccgtaatcctcaccgaagtatttgtcgaccagcccattggccatgttcctcatc 293
            |||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||||
Sbjct: 4985 tcgaggccataatcctcaccgaagtattcgtcgaccaaaccattggccatgttcctcatc 4926

                                                                        
Query: 294  gcctcgttctcatggaactggaacctctccatggcctcgatgccgtcccccctctccaca 353
              ||||||||| ||||| || ||||||||||||||||| ||||||||| || | ||||||
Sbjct: 4925 tgctcgttctcgtggaattgaaacctctccatggcctcaatgccgtcctccatttccaca 4866

                                                   
Query: 354  agctgtggaccctgtccattgggataccccctcatcacc 392
            |||| ||| || ||   ||||||||||||||||||||||
Sbjct: 4865 agctttgggccttgcttattgggataccccctcatcacc 4827



 Score =  103 bits (52), Expect = 6e-19
 Identities = 97/112 (86%)
 Strand = Plus / Minus

                                                                        
Query: 388  tcaccagttccaggaactgaagaccgagtcttgcgctctctatatcagcagacctgacca 447
            |||||||||| |||||||||||||| || | |||| | |||| |||||||||||||||||
Sbjct: 4691 tcaccagttctaggaactgaagaccaagccctgcggtatctacatcagcagacctgacca 4632

                                                                
Query: 448  aatttatgaatcctgggagggctccaccatttatgatcgagactagatgttc 499
            | | ||| |||||||| ||||||||||||| || ||| | ||||||||||||
Sbjct: 4631 agtgtataaatcctggaagggctccaccatctacgatagcgactagatgttc 4580
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>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0433F09
          Length = 150150

 Score =  165 bits (83), Expect = 2e-37
 Identities = 140/159 (88%)
 Strand = Plus / Minus

                                                                         
Query: 234   tcgaggccgtaatcctcaccgaagtatttgtcgaccagcccattggccatgttcctcatc 293
             |||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||||
Sbjct: 19022 tcgaggccataatcctcaccgaagtattcgtcgaccaaaccattggccatgttcctcatc 18963

                                                                         
Query: 294   gcctcgttctcatggaactggaacctctccatggcctcgatgccgtcccccctctccaca 353
               ||||||||| ||||| || ||||||||||||||||| ||||||||| || | ||||||
Sbjct: 18962 tgctcgttctcgtggaattgaaacctctccatggcctcaatgccgtcctccatttccaca 18903

                                                    
Query: 354   agctgtggaccctgtccattgggataccccctcatcacc 392
             |||| ||| || ||   ||||||||||||||||||||||
Sbjct: 18902 agctttgggccttgcttattgggataccccctcatcacc 18864



 Score =  103 bits (52), Expect = 6e-19
 Identities = 97/112 (86%)
 Strand = Plus / Minus

                                                                         
Query: 388   tcaccagttccaggaactgaagaccgagtcttgcgctctctatatcagcagacctgacca 447
             |||||||||| |||||||||||||| || | |||| | |||| |||||||||||||||||
Sbjct: 18728 tcaccagttctaggaactgaagaccaagccctgcggtatctacatcagcagacctgacca 18669

                                                                 
Query: 448   aatttatgaatcctgggagggctccaccatttatgatcgagactagatgttc 499
             | | ||| |||||||| ||||||||||||| || ||| | ||||||||||||
Sbjct: 18668 agtgtataaatcctggaagggctccaccatctacgatagcgactagatgttc 18617
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>gb|AY530729.1| Zea mays Tha8 (tha8) gene, complete cds
          Length = 5140

 Score =  105 bits (53), Expect = 1e-19
 Identities = 98/113 (86%)
 Strand = Plus / Plus

                                                                        
Query: 255  aagtatttgtcgaccagcccattggccatgttcctcatcgcctcgttctcatggaactgg 314
            |||||||| || ||||  ||||| ||||| |||||||||  |||||||||||||||||||
Sbjct: 4989 aagtatttatcaaccaaaccattcgccatattcctcatcatctcgttctcatggaactgg 5048

                                                                 
Query: 315  aacctctccatggcctcgatgccgtcccccctctccacaagctgtggaccctg 367
            ||||||||||||||||| ||||||||| |  ||||||| |||| ||| |||||
Sbjct: 5049 aacctctccatggcctcaatgccgtcctctgtctccacgagctttgggccctg 5101
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 37    ttccgctacaacaaccgcatcgc 59
             |||||||||||||||||||||||
Sbjct: 96238 ttccgctacaacaaccgcatcgc 96216
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>ref|XM_510480.1| PREDICTED: Pan troglodytes LOC453513 (LOC453513), mRNA
          Length = 2244

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 308  gaactggaacctctccatggcctcg 332
            |||||||||| ||||||||||||||
Sbjct: 1483 gaactggaacatctccatggcctcg 1459
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>gb|AC007367.3| Homo sapiens BAC clone RP11-518G12 from 2, complete sequence
          Length = 197278

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 134   ttacaaaaaagttgcatttta 154
             |||||||||||||||||||||
Sbjct: 93453 ttacaaaaaagttgcatttta 93433
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>ref|XM_238544.3| PREDICTED: Rattus norvegicus similar to ubiquitin associated
           protein (LOC300788), mRNA
          Length = 714

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 308 gaactggaacctctccatggcctcg 332
           |||||||||| ||||||||||||||
Sbjct: 567 gaactggaacatctccatggcctcg 543
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>gb|BC086832.1| Danio rerio zgc:103559, mRNA (cDNA clone MGC:103559 IMAGE:7241635),
           complete cds
          Length = 1654

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 acacgagcagctgctgctgg 184
           ||||||||||||||||||||
Sbjct: 422 acacgagcagctgctgctgg 441
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>gb|BC082247.1| Homo sapiens ribosomal protein L19, mRNA (cDNA clone IMAGE:6109987)
          Length = 2158

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 308  gaactggaacctctccatggcctc 331
            |||||||||| |||||||||||||
Sbjct: 1220 gaactggaacatctccatggcctc 1197
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>ref|XM_956860.1| Neurospora crassa OR74A hypothetical protein (NCU08652.1) partial
            mRNA
          Length = 2148

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 111  acagtcttgtatacattccacgat 134
            |||| |||||||||||||||||||
Sbjct: 1549 acagccttgtatacattccacgat 1572
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>ref|XM_329775.1| Neurospora crassa OR74A hypothetical protein (NCU08652.1) partial
            mRNA
          Length = 2148

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 111  acagtcttgtatacattccacgat 134
            |||| |||||||||||||||||||
Sbjct: 1549 acagccttgtatacattccacgat 1572
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>gb|BC065824.1| Homo sapiens similar to ubiquitin-associated protein 1 (predicted),
           mRNA (cDNA clone IMAGE:6471394)
          Length = 887

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 308 gaactggaacctctccatggcctc 331
           |||||||||| |||||||||||||
Sbjct: 345 gaactggaacatctccatggcctc 322
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>gb|BC052607.1| Homo sapiens ribosomal protein L19, mRNA (cDNA clone IMAGE:6258134),
            **** WARNING: chimeric clone ****
          Length = 2158

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 308  gaactggaacctctccatggcctc 331
            |||||||||| |||||||||||||
Sbjct: 1220 gaactggaacatctccatggcctc 1197
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>gb|BC062547.1| Homo sapiens cDNA clone IMAGE:6252627, **** WARNING: chimeric clone
            ****
          Length = 2158

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 308  gaactggaacctctccatggcctc 331
            |||||||||| |||||||||||||
Sbjct: 1220 gaactggaacatctccatggcctc 1197
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>emb|AL008720.1|HS343C1 Human DNA sequence from clone CTA-343C1 on chromosome 22, complete
              sequence
          Length = 198570

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    aggaactgaagaccgagtct 418
              ||||||||||||||||||||
Sbjct: 165564 aggaactgaagaccgagtct 165583
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>gb|AY956334.1| Streptomyces aureofaciens strain CCM3239 auricin biosynthesis gene
            cluster, partial sequence
          Length = 17455

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 166  cacgagcagctgctgctggg 185
            ||||||||||||||||||||
Sbjct: 5071 cacgagcagctgctgctggg 5090
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>emb|CR749500.1| Homo sapiens mRNA; cDNA DKFZp686J168 (from clone DKFZp686J168)
          Length = 7400

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 308  gaactggaacctctccatggcctc 331
            |||||||||| |||||||||||||
Sbjct: 7143 gaactggaacatctccatggcctc 7120
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>dbj|AK023802.1| Homo sapiens cDNA FLJ13740 fis, clone PLACE3000199
          Length = 5488

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 308  gaactggaacctctccatggcctc 331
            |||||||||| |||||||||||||
Sbjct: 4007 gaactggaacatctccatggcctc 3984
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>dbj|AK156239.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830013F05 product:unclassifiable, full
            insert sequence
          Length = 3113

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 175  ctgctgctgggttcacaaac 194
            ||||||||||||||||||||
Sbjct: 2304 ctgctgctgggttcacaaac 2285
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>ref|XM_940509.1| PREDICTED: Homo sapiens similar to ubiquitin-associated protein 1
            (predicted) (LOC651364), mRNA
          Length = 1681

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 308  gaactggaacctctccatggcctc 331
            |||||||||| |||||||||||||
Sbjct: 1213 gaactggaacatctccatggcctc 1190
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>ref|XM_372574.4| PREDICTED: Homo sapiens similar to ubiquitin-associated protein 1
            (predicted) (LOC390595), mRNA
          Length = 1680

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 308  gaactggaacctctccatggcctc 331
            |||||||||| |||||||||||||
Sbjct: 1212 gaactggaacatctccatggcctc 1189
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>gb|AC013553.14| Homo sapiens chromosome 15, clone RP11-325L12, complete sequence
          Length = 184864

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 308    gaactggaacctctccatggcctc 331
              |||||||||| |||||||||||||
Sbjct: 103622 gaactggaacatctccatggcctc 103645
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>ref|XM_579893.1| PREDICTED: Rattus norvegicus LOC498958 (LOC498958), mRNA
          Length = 2074

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 314 gaacctctccatggcctcga 333
           ||||||||||||||||||||
Sbjct: 615 gaacctctccatggcctcga 634
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>ref|NM_001008599.1| Danio rerio zgc:103559 (zgc:103559), mRNA
          Length = 1654

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 acacgagcagctgctgctgg 184
           ||||||||||||||||||||
Sbjct: 422 acacgagcagctgctgctgg 441
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>gb|AC134250.4| Mus musculus BAC clone RP23-406L17 from chromosome unknown, complete
             sequence
          Length = 168403

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   ctgctgctgggttcacaaac 194
             ||||||||||||||||||||
Sbjct: 62699 ctgctgctgggttcacaaac 62680
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>emb|CR556706.7| Mouse DNA sequence from clone RP23-105E20 on chromosome X, complete
             sequence
          Length = 201020

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   ctgctgctgggttcacaaac 194
             ||||||||||||||||||||
Sbjct: 17668 ctgctgctgggttcacaaac 17649
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>gb|DQ206589.1| Aphrocallistes vastus isolate TOA53 DNA replication licensing
           factor MCM7 component mRNA, partial cds
          Length = 816

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 gcccattggccatgttcctc 290
           ||||||||||||||||||||
Sbjct: 168 gcccattggccatgttcctc 187
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>gb|U43400.1|HHU43400 Human herpesvirus-7 (HHV7) JI, complete virion genome
          Length = 144861

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    attttacagtttgagtacac 168
              ||||||||||||||||||||
Sbjct: 106881 attttacagtttgagtacac 106900
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>gb|AF037218.1| Human herpesvirus 7 strain RK, complete genome
          Length = 153080

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    attttacagtttgagtacac 168
              ||||||||||||||||||||
Sbjct: 111111 attttacagtttgagtacac 111130
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>emb|AL359606.1|HSM802721 Homo sapiens mRNA; cDNA DKFZp547K056 (from clone DKFZp547K056)
          Length = 1996

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 308  gaactggaacctctccatggcctc 331
            |||||||||| |||||||||||||
Sbjct: 1741 gaactggaacatctccatggcctc 1718


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,900,075
Number of Sequences: 3902068
Number of extensions: 3900075
Number of successful extensions: 83618
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83527
Number of HSP's gapped (non-prelim): 91
length of query: 527
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 504
effective length of database: 17,143,297,704
effective search space: 8640222042816
effective search space used: 8640222042816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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