ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20k03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR381587.14| Zebrafish DNA sequence from clone CH211-142C4, ... 42 0.85
2gb|AC140033.3| Medicago truncatula clone mth2-24f11, complete se... 42 0.85
3gb|AC140544.21| Medicago truncatula clone mth2-17g16, complete s... 42 0.85
4emb|BX247884.6| Zebrafish DNA sequence from clone CH211-174M1 in... 42 0.85
5gb|AC132871.7| Mus musculus chromosome 1, clone RP24-387A12, com... 40 3.3
6emb|AL353779.11| Human DNA sequence from clone RP1-43O17 on chro... 40 3.3
7emb|Y14763.1|LEY14763 Lycopersicon esculentum mRNA for glutathio... 40 3.3
8dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 3.3
9emb|AL928611.9| Mouse DNA sequence from clone RP23-263O5 on chro... 40 3.3

>emb|CR381587.14| Zebrafish DNA sequence from clone CH211-142C4, complete sequence
          Length = 169210

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 178   agataaatgatttatactctg 198
             |||||||||||||||||||||
Sbjct: 83560 agataaatgatttatactctg 83540



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>gb|AC140033.3| Medicago truncatula clone mth2-24f11, complete sequence
          Length = 120384

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 183   aatgatttatactctgactat 203
             |||||||||||||||||||||
Sbjct: 35956 aatgatttatactctgactat 35936



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>gb|AC140544.21| Medicago truncatula clone mth2-17g16, complete sequence
          Length = 118777

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 183   aatgatttatactctgactat 203
             |||||||||||||||||||||
Sbjct: 81873 aatgatttatactctgactat 81853



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>emb|BX247884.6| Zebrafish DNA sequence from clone CH211-174M1 in linkage group 1,
             complete sequence
          Length = 108530

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 178   agataaatgatttatactctg 198
             |||||||||||||||||||||
Sbjct: 57113 agataaatgatttatactctg 57133



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>gb|AC132871.7| Mus musculus chromosome 1, clone RP24-387A12, complete sequence
          Length = 188649

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      cagactaacatatacactaa 20
              ||||||||||||||||||||
Sbjct: 120137 cagactaacatatacactaa 120156



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>emb|AL353779.11| Human DNA sequence from clone RP1-43O17 on chromosome 1 Contains the
            LEP7 gene for late envelope protein 7, two small proline
            rich-like (epidermal differentiation complex) 1B (SPRL1B)
            pseudogenes, the gene for a novel protein, the LEP6 gene
            for late envelope protein 6, the LEP5 gene for late
            envelope protein 5, the LEP4 gene for late envelope
            protein 4 and the LEP3 gene for late envelope protein 3,
            complete sequence
          Length = 96013

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 173  atattagataaatgatttatactctgac 200
            ||||||||||||||| ||||| ||||||
Sbjct: 7842 atattagataaatgaattataatctgac 7815



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>emb|Y14763.1|LEY14763 Lycopersicon esculentum mRNA for glutathione peroxidase, partial
          Length = 536

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 49  tatttgntattagaacaatatta 71
           |||||| ||||||||||||||||
Sbjct: 419 tatttgatattagaacaatatta 441



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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 180     ataaatgatttatactctga 199
               ||||||||||||||||||||
Sbjct: 2721689 ataaatgatttatactctga 2721708



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>emb|AL928611.9| Mouse DNA sequence from clone RP23-263O5 on chromosome 2, complete
              sequence
          Length = 199317

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    tattagataaatgatttata 193
              ||||||||||||||||||||
Sbjct: 174606 tattagataaatgatttata 174587


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,544,169
Number of Sequences: 3902068
Number of extensions: 1544169
Number of successful extensions: 24434
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24413
Number of HSP's gapped (non-prelim): 21
length of query: 258
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 236
effective length of database: 17,147,199,772
effective search space: 4046739146192
effective search space used: 4046739146192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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