Clone Information

BLAST Search Result

Clone Name	rbasd20k02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK099445.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	466	e-128
2	gb\|AY107876.1\| Zea mays PCO089175 mRNA sequence	353	5e-94
3	gb\|BT024061.1\| Zea mays clone EL01N0441H04 mRNA sequence	337	3e-89
4	gb\|AC145383.3\| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genom...	147	6e-32
5	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	147	6e-32
6	emb\|AL732379.5\|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0...	147	6e-32
7	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	147	6e-32
8	emb\|AM228955.1\| Pinus sylvestris mRNA for putative ornithine ami...	82	3e-12
9	emb\|AJ278819.1\|MTR278819 Medicago truncatula mRNA for delta orni...	56	2e-04
10	gb\|AF177590.1\|AF177590 Vitis vinifera ornithine aminotransferase...	52	0.002
11	gb\|DQ224372.1\| Glycine max ornithine aminotransferase mRNA, comp...	46	0.15
12	emb\|AL157877.11\| Human DNA sequence from clone RP11-2P5 on chrom...	44	0.61
13	ref\|NM_123987.2\| Arabidopsis thaliana delta-OAT; ornithine-oxo-a...	42	2.4
14	ref\|XM_739667.1\| Plasmodium chabaudi chabaudi ornithine aminotra...	42	2.4
15	gb\|BT023421.1\| Arabidopsis thaliana At5g46180 gene, complete cds	42	2.4
16	gb\|AY505014.1\| Thermomicrobia bacterium PRI-1686 alpha-L-rhamnos...	42	2.4
17	gb\|AC106720.8\| Homo sapiens 3 BAC RP11-26M20 (Roswell Park Cance...	42	2.4
18	emb\|BX005108.8\| Zebrafish DNA sequence from clone CH211-268B13 i...	42	2.4
19	gb\|DQ066534.1\| Skunkpox virus isolate skk-pox RNA polymerase sub...	42	2.4
20	gb\|AC163331.8\| Mus musculus chromosome 5, clone RP23-50G20, comp...	40	9.5
21	gb\|AC149233.1\| Pan troglodytes chromosome X clone RP43-034P07 ma...	40	9.5
22	gb\|AC121279.7\| Mus musculus chromosome 3, clone RP23-4F17, compl...	40	9.5
23	ref\|XM_801885.1\| Trypanosoma cruzi strain CL Brener hypothetical...	40	9.5
24	ref\|XM_804108.1\| Trypanosoma cruzi strain CL Brener hypothetical...	40	9.5
25	gb\|AC164631.5\| Mus musculus 6 BAC RP23-359M3 (Roswell Park Cance...	40	9.5
26	gb\|AF262215.1\| Oryza sativa guanine nucleotide-exchange protein ...	40	9.5
27	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.5
28	gb\|AC010145.10\| Homo sapiens BAC clone RP11-355H10 from 2, compl...	40	9.5
29	gb\|AC011444.5\|AC011444 Homo sapiens chromosome 19 clone CTC-232P...	40	9.5
30	dbj\|AP006268.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.5
31	dbj\|AP004343.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.5
32	dbj\|BS000126.1\| Pan troglodytes chromosome 22 clone:PTB-128A24, ...	40	9.5
33	gb\|AC138398.9\| Mus musculus chromosome 5, clone RP23-309P20, com...	40	9.5
34	dbj\|AP001730.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	9.5
35	gb\|AC002368.1\|AC002368 Homo sapiens Xq28 BAC PAC and cosmid clon...	40	9.5
36	gb\|AC118672.3\| Genomic sequence for Oryza sativa, Nipponbare str...	40	9.5
37	gb\|AF008243.1\|AF008243 Homo sapiens cosmid clone C102H1064 from ...	40	9.5
38	dbj\|AP000160.1\| Homo sapiens genomic DNA, chromosome 21q22.2, DS...	40	9.5
39	dbj\|AP000018.2\| Homo sapiens genomic DNA of 21q22.2 Down Syndrom...	40	9.5
40	dbj\|AP001417.2\| Homo sapiens genomic DNA, chromosome 21q22.2, LB...	40	9.5

>dbj|AK099445.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021G10, full
            insert sequence
          Length = 1814

 Score =  466 bits (235), Expect = e-128
 Identities = 442/511 (86%)
 Strand = Plus / Minus

                                                                        
Query: 180  gattctggtttcttgatctgcttctgcaactgcggcaagtcatgctcaagcacatcgcta 239
            |||||||  ||||||||||||||||||| ||| |||| ||||||||||||||||||||| 
Sbjct: 1523 gattctgtcttcttgatctgcttctgcagctgtggcaggtcatgctcaagcacatcgctg 1464

                                                                        
Query: 240  agtgcctttgatgcctctgcgagctcctcgggactgatcgaaatgggaggggctaatcgg 299
            |  ||||| ||||| ||||| |||||||| |||||||| || |  ||||| ||||||| |
Sbjct: 1463 aacgccttcgatgcttctgcaagctcctcaggactgattgacagcggaggcgctaatctg 1404

                                                                        
Query: 300  attatggtgtcatgcgtgggctttgctagaatgcccctctcctttagcttgatgcaaata 359
            |||||||||||||| ||||||||||| |||| ||| |||||||| ||||||||||| || 
Sbjct: 1403 attatggtgtcatgtgtgggctttgccagaacgcctctctccttcagcttgatgcagatg 1344

                                                                        
Query: 360  tcatatgcagaagcagggtatagagctttgctgcttaggtctacagcattaagcaaacct 419
            || || |||||||||||| ||| ||||| | ||||||| || || |||||||||||||| 
Sbjct: 1343 tcgtaagcagaagcaggggataaagcttcgttgcttagatccactgcattaagcaaaccc 1284

                                                                        
Query: 420  ctcccgcgtatttccctgataatatgaggaaatttctgctgaacctcttgtaactggtcc 479
            ||||| |||| |||||| || || || || ||| |||| |||||||  |||| ||| || 
Sbjct: 1283 ctcccacgtacttcccttatgatttgcgggaatctctgttgaaccttctgtagctgatct 1224

                                                                        
Query: 480  ctgaactcctgacctaactccgcggctctttcaacaagaccttcatctttgaccactttc 539
            |||||||| || |||||||  || || |||||||| |||||||||||| | || ||||||
Sbjct: 1223 ctgaactcttgtcctaactttgcagccctttcaacgagaccttcatctgtaactactttc 1164

                                                                        
Query: 540  agtgatgcgattgccacagcacttgccaatgggtttccaccaaatgtacttccatgttct 599
            |||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1163 agtgatgcaactgccacagcacttgccaatgggttcccaccaaatgtacttccatgttct 1104

                                                                        
Query: 600  cctggcttgatacacagcatgatatccttatcagcaagaactgcactgaccggaactact 659
            ||||| |||||||||||||| ||||||||||| |||||||| |||||||| |||||||||
Sbjct: 1103 cctggtttgatacacagcataatatccttatctgcaagaaccgcactgacaggaactact 1044

                                           
Query: 660  ccagcacctagtgccttgcctagaatcacca 690
            |||||||| || |||||||||||||||||||
Sbjct: 1043 ccagcaccaagggccttgcctagaatcacca 1013

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>gb|AY107876.1| Zea mays PCO089175 mRNA sequence
          Length = 1203

 Score =  353 bits (178), Expect = 5e-94
 Identities = 438/525 (83%), Gaps = 6/525 (1%)
 Strand = Plus / Minus

                                                                       
Query: 173 tgcctccgattctggtttcttgatctgcttctgcaactgc------ggcaagtcatgctc 226
           |||||| |||||||| || || ||||||||||||| ||||      ||||||||||||||
Sbjct: 906 tgcctcagattctggcttttttatctgcttctgcagctgcagctgtggcaagtcatgctc 847

                                                                       
Query: 227 aagcacatcgctaagtgcctttgatgcctctgcgagctcctcgggactgatcgaaatggg 286
            ||||| || ||||| ||||| ||||| ||||| |||||||| |||||||| |  | |||
Sbjct: 846 cagcacgtcactaagcgccttggatgcttctgcaagctcctcaggactgattgtgagggg 787

                                                                       
Query: 287 aggggctaatcggattatggtgtcatgcgtgggctttgctagaatgcccctctcctttag 346
           ||| || | ||||||||| |||||||| ||||| || |||| |||||| |||||||| | 
Sbjct: 786 aggagcaagtcggattatagtgtcatgtgtgggtttcgctaaaatgcctctctccttcaa 727

                                                                       
Query: 347 cttgatgcaaatatcatatgcagaagcagggtatagagctttgctgcttaggtctacagc 406
           ||||||||| || |||||||||||||||||  |||| || | | || |||| || || ||
Sbjct: 726 cttgatgcagatgtcatatgcagaagcaggagatagcgcgtcgttgtttagatccactgc 667

                                                                       
Query: 407 attaagcaaacctctcccgcgtatttccctgataatatgaggaaatttctgctgaacctc 466
            || |||||||| |||||||| | ||| || |  || ||||| ||||||||||| |||| 
Sbjct: 666 gttcagcaaacccctcccgcgcacttctcttaggatttgagggaatttctgctggacctt 607

                                                                       
Query: 467 ttgtaactggtccctgaactcctgacctaactccgcggctctttcaacaagaccttcatc 526
            |||||||||||||| |||||||| |||||||  || || ||||||||||||||||| ||
Sbjct: 606 ctgtaactggtccctaaactcctgtcctaactttgcagccctttcaacaagaccttcgtc 547

                                                                       
Query: 527 tttgaccactttcagtgatgcgattgccacagcacttgccaatgggtttccaccaaatgt 586
           | ||||||||||||||||||| | ||||||||| || || || || || ||||| |||||
Sbjct: 546 tctgaccactttcagtgatgcaactgccacagcgctagctaacggattcccaccgaatgt 487

                                                                       
Query: 587 acttccatgttctcctggcttgatacacagcatgatatccttatcagcaagaactgcact 646
           |||||||||||| |||||  ||||||||||||||| |||||| || ||||||||||||||
Sbjct: 486 acttccatgttcccctggtctgatacacagcatgacatccttgtctgcaagaactgcact 427

                                                        
Query: 647 gaccggaactactccagcacctagtgccttgcctagaatcaccat 691
           ||| ||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 426 gactggaacaactccagcaccgagtgctttgcctagaatcaccat 382

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>gb|BT024061.1| Zea mays clone EL01N0441H04 mRNA sequence
          Length = 1350

 Score =  337 bits (170), Expect = 3e-89
 Identities = 436/525 (83%), Gaps = 6/525 (1%)
 Strand = Plus / Minus

                                                                        
Query: 173  tgcctccgattctggtttcttgatctgcttctgcaactgc------ggcaagtcatgctc 226
            |||||| |||||||| || || ||||||||||||| ||||      ||||||||||| ||
Sbjct: 1065 tgcctcagattctggcttttttatctgcttctgcagctgcagctgtggcaagtcatgttc 1006

                                                                        
Query: 227  aagcacatcgctaagtgcctttgatgcctctgcgagctcctcgggactgatcgaaatggg 286
             ||||| || ||||| ||||| ||||| ||||| |||||||| |||||||| |  | |||
Sbjct: 1005 cagcacgtcactaagcgccttggatgcttctgcaagctcctcaggactgattgtgagggg 946

                                                                        
Query: 287  aggggctaatcggattatggtgtcatgcgtgggctttgctagaatgcccctctcctttag 346
            ||| || | ||||||||| |||||||| ||||| || |||| |||||| |||||||| | 
Sbjct: 945  aggagcaagtcggattatagtgtcatgtgtgggtttcgctaaaatgcctctctccttcaa 886

                                                                        
Query: 347  cttgatgcaaatatcatatgcagaagcagggtatagagctttgctgcttaggtctacagc 406
            ||||||||| || |||||||||||||||||  |||| || | | || |||| || || ||
Sbjct: 885  cttgatgcagatgtcatatgcagaagcaggagatagcgcgtcgttgtttagatccactgc 826

                                                                        
Query: 407  attaagcaaacctctcccgcgtatttccctgataatatgaggaaatttctgctgaacctc 466
             || |||||||| |||||||| | ||| || |  || ||||| ||||||||||| |||| 
Sbjct: 825  gttcagcaaacccctcccgcgcacttctcttaggatttgagggaatttctgctggacctt 766

                                                                        
Query: 467  ttgtaactggtccctgaactcctgacctaactccgcggctctttcaacaagaccttcatc 526
             |||||||||||||| |||||||| |||||||  || || ||||||||||||||||| ||
Sbjct: 765  ctgtaactggtccctaaactcctgtcctaactttgcagccctttcaacaagaccttcgtc 706

                                                                        
Query: 527  tttgaccactttcagtgatgcgattgccacagcacttgccaatgggtttccaccaaatgt 586
            | ||||||||||||||||||| | ||||||||| || || || || || ||||| |||||
Sbjct: 705  tctgaccactttcagtgatgcaactgccacagcgctagctaacggattcccaccgaatgt 646

                                                                        
Query: 587  acttccatgttctcctggcttgatacacagcatgatatccttatcagcaagaactgcact 646
            |||||||||||| |||||  ||||||||||||||| |||| | || ||||||||||||||
Sbjct: 645  acttccatgttcccctggtctgatacacagcatgacatccctgtctgcaagaactgcact 586

                                                         
Query: 647  gaccggaactactccagcacctagtgccttgcctagaatcaccat 691
            ||| ||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 585  gactggaacaactccagcaccgagtgctttgcctagaatcaccat 541

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>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete
             sequence
          Length = 141691

 Score =  147 bits (74), Expect = 6e-32
 Identities = 179/214 (83%)
 Strand = Plus / Plus

                                                                         
Query: 285   ggaggggctaatcggattatggtgtcatgcgtgggctttgctagaatgcccctctccttt 344
             ||||| ||||||| ||||||||||||||| ||||||||||| |||| ||| |||||||| 
Sbjct: 77895 ggaggcgctaatctgattatggtgtcatgtgtgggctttgccagaacgcctctctccttc 77954

                                                                         
Query: 345   agcttgatgcaaatatcatatgcagaagcagggtatagagctttgctgcttaggtctaca 404
             ||||||||||| || || || |||||||||||| ||| ||||| | ||||||| || || 
Sbjct: 77955 agcttgatgcagatgtcgtaagcagaagcaggggataaagcttcgttgcttagatccact 78014

                                                                         
Query: 405   gcattaagcaaacctctcccgcgtatttccctgataatatgaggaaatttctgctgaacc 464
             |||||||||||||| ||||| |||| |||||| || || || || ||| |||| ||||||
Sbjct: 78015 gcattaagcaaacccctcccacgtacttcccttatgatttgcgggaatctctgttgaacc 78074

                                               
Query: 465   tcttgtaactggtccctgaactcctgacctaact 498
             |  |||| ||| || |||||||| || |||||||
Sbjct: 78075 ttctgtagctgatctctgaactcttgtcctaact 78108



 Score =  141 bits (71), Expect = 3e-30
 Identities = 92/99 (92%)
 Strand = Plus / Plus

                                                                         
Query: 588   cttccatgttctcctggcttgatacacagcatgatatccttatcagcaagaactgcactg 647
             ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 78524 cttccatgttctcctggtttgatacacagcataatatccttatctgcaagaaccgcactg 78583

                                                    
Query: 648   accggaactactccagcacctagtgccttgcctagaatc 686
             || ||||||||||||||||| || |||||||||||||||
Sbjct: 78584 acaggaactactccagcaccaagggccttgcctagaatc 78622



 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                         
Query: 507   ctttcaacaagaccttcatctttgaccactttcagtgatgcgattgccacagcacttgcc 566
             |||||||| |||||||||||| | || |||||||||||||| | ||||||||||||||||
Sbjct: 78233 ctttcaacgagaccttcatctgtaactactttcagtgatgcaactgccacagcacttgcc 78292

                                    
Query: 567   aatgggtttccaccaaatgtact 589
             |||||||| ||||||||||||||
Sbjct: 78293 aatgggttcccaccaaatgtact 78315



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 85/97 (87%)
 Strand = Plus / Plus

                                                                         
Query: 180   gattctggtttcttgatctgcttctgcaactgcggcaagtcatgctcaagcacatcgcta 239
             |||||||  ||||||||||||||||||| ||| |||| ||||||||||||||||||||| 
Sbjct: 74009 gattctgtcttcttgatctgcttctgcagctgtggcaggtcatgctcaagcacatcgctg 74068

                                                  
Query: 240   agtgcctttgatgcctctgcgagctcctcgggactga 276
             |  ||||| ||||| ||||| |||||||| |||||||
Sbjct: 74069 aacgccttcgatgcttctgcaagctcctcaggactga 74105

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  147 bits (74), Expect = 6e-32
 Identities = 179/214 (83%)
 Strand = Plus / Plus

                                                                            
Query: 285      ggaggggctaatcggattatggtgtcatgcgtgggctttgctagaatgcccctctccttt 344
                ||||| ||||||| ||||||||||||||| ||||||||||| |||| ||| |||||||| 
Sbjct: 24702348 ggaggcgctaatctgattatggtgtcatgtgtgggctttgccagaacgcctctctccttc 24702407

                                                                            
Query: 345      agcttgatgcaaatatcatatgcagaagcagggtatagagctttgctgcttaggtctaca 404
                ||||||||||| || || || |||||||||||| ||| ||||| | ||||||| || || 
Sbjct: 24702408 agcttgatgcagatgtcgtaagcagaagcaggggataaagcttcgttgcttagatccact 24702467

                                                                            
Query: 405      gcattaagcaaacctctcccgcgtatttccctgataatatgaggaaatttctgctgaacc 464
                |||||||||||||| ||||| |||| |||||| || || || || ||| |||| ||||||
Sbjct: 24702468 gcattaagcaaacccctcccacgtacttcccttatgatttgcgggaatctctgttgaacc 24702527

                                                  
Query: 465      tcttgtaactggtccctgaactcctgacctaact 498
                |  |||| ||| || |||||||| || |||||||
Sbjct: 24702528 ttctgtagctgatctctgaactcttgtcctaact 24702561



 Score =  141 bits (71), Expect = 3e-30
 Identities = 92/99 (92%)
 Strand = Plus / Plus

                                                                            
Query: 588      cttccatgttctcctggcttgatacacagcatgatatccttatcagcaagaactgcactg 647
                ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 24702977 cttccatgttctcctggtttgatacacagcataatatccttatctgcaagaaccgcactg 24703036

                                                       
Query: 648      accggaactactccagcacctagtgccttgcctagaatc 686
                || ||||||||||||||||| || |||||||||||||||
Sbjct: 24703037 acaggaactactccagcaccaagggccttgcctagaatc 24703075



 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                            
Query: 507      ctttcaacaagaccttcatctttgaccactttcagtgatgcgattgccacagcacttgcc 566
                |||||||| |||||||||||| | || |||||||||||||| | ||||||||||||||||
Sbjct: 24702686 ctttcaacgagaccttcatctgtaactactttcagtgatgcaactgccacagcacttgcc 24702745

                                       
Query: 567      aatgggtttccaccaaatgtact 589
                |||||||| ||||||||||||||
Sbjct: 24702746 aatgggttcccaccaaatgtact 24702768



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 85/97 (87%)
 Strand = Plus / Plus

                                                                            
Query: 180      gattctggtttcttgatctgcttctgcaactgcggcaagtcatgctcaagcacatcgcta 239
                |||||||  ||||||||||||||||||| ||| |||| ||||||||||||||||||||| 
Sbjct: 24698462 gattctgtcttcttgatctgcttctgcagctgtggcaggtcatgctcaagcacatcgctg 24698521

                                                     
Query: 240      agtgcctttgatgcctctgcgagctcctcgggactga 276
                |  ||||| ||||| ||||| |||||||| |||||||
Sbjct: 24698522 aacgccttcgatgcttctgcaagctcctcaggactga 24698558



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 623     atccttatcagcaagaactgcact 646
               |||||||||| |||||||||||||
Sbjct: 7726480 atccttatcaacaagaactgcact 7726503

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>emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of library OSJNBa from
              chromosome 3 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 136470

 Score =  147 bits (74), Expect = 6e-32
 Identities = 179/214 (83%)
 Strand = Plus / Plus

                                                                          
Query: 285    ggaggggctaatcggattatggtgtcatgcgtgggctttgctagaatgcccctctccttt 344
              ||||| ||||||| ||||||||||||||| ||||||||||| |||| ||| |||||||| 
Sbjct: 133635 ggaggcgctaatctgattatggtgtcatgtgtgggctttgccagaacgcctctctccttc 133694

                                                                          
Query: 345    agcttgatgcaaatatcatatgcagaagcagggtatagagctttgctgcttaggtctaca 404
              ||||||||||| || || || |||||||||||| ||| ||||| | ||||||| || || 
Sbjct: 133695 agcttgatgcagatgtcgtaagcagaagcaggggataaagcttcgttgcttagatccact 133754

                                                                          
Query: 405    gcattaagcaaacctctcccgcgtatttccctgataatatgaggaaatttctgctgaacc 464
              |||||||||||||| ||||| |||| |||||| || || || || ||| |||| ||||||
Sbjct: 133755 gcattaagcaaacccctcccacgtacttcccttatgatttgcgggaatctctgttgaacc 133814

                                                
Query: 465    tcttgtaactggtccctgaactcctgacctaact 498
              |  |||| ||| || |||||||| || |||||||
Sbjct: 133815 ttctgtagctgatctctgaactcttgtcctaact 133848



 Score =  141 bits (71), Expect = 3e-30
 Identities = 92/99 (92%)
 Strand = Plus / Plus

                                                                          
Query: 588    cttccatgttctcctggcttgatacacagcatgatatccttatcagcaagaactgcactg 647
              ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 134264 cttccatgttctcctggtttgatacacagcataatatccttatctgcaagaaccgcactg 134323

                                                     
Query: 648    accggaactactccagcacctagtgccttgcctagaatc 686
              || ||||||||||||||||| || |||||||||||||||
Sbjct: 134324 acaggaactactccagcaccaagggccttgcctagaatc 134362



 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                          
Query: 507    ctttcaacaagaccttcatctttgaccactttcagtgatgcgattgccacagcacttgcc 566
              |||||||| |||||||||||| | || |||||||||||||| | ||||||||||||||||
Sbjct: 133973 ctttcaacgagaccttcatctgtaactactttcagtgatgcaactgccacagcacttgcc 134032

                                     
Query: 567    aatgggtttccaccaaatgtact 589
              |||||||| ||||||||||||||
Sbjct: 134033 aatgggttcccaccaaatgtact 134055



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 85/97 (87%)
 Strand = Plus / Plus

                                                                          
Query: 180    gattctggtttcttgatctgcttctgcaactgcggcaagtcatgctcaagcacatcgcta 239
              |||||||  ||||||||||||||||||| ||| |||| ||||||||||||||||||||| 
Sbjct: 129749 gattctgtcttcttgatctgcttctgcagctgtggcaggtcatgctcaagcacatcgctg 129808

                                                   
Query: 240    agtgcctttgatgcctctgcgagctcctcgggactga 276
              |  ||||| ||||| ||||| |||||||| |||||||
Sbjct: 129809 aacgccttcgatgcttctgcaagctcctcaggactga 129845

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  147 bits (74), Expect = 6e-32
 Identities = 179/214 (83%)
 Strand = Plus / Plus

                                                                            
Query: 285      ggaggggctaatcggattatggtgtcatgcgtgggctttgctagaatgcccctctccttt 344
                ||||| ||||||| ||||||||||||||| ||||||||||| |||| ||| |||||||| 
Sbjct: 24619178 ggaggcgctaatctgattatggtgtcatgtgtgggctttgccagaacgcctctctccttc 24619237

                                                                            
Query: 345      agcttgatgcaaatatcatatgcagaagcagggtatagagctttgctgcttaggtctaca 404
                ||||||||||| || || || |||||||||||| ||| ||||| | ||||||| || || 
Sbjct: 24619238 agcttgatgcagatgtcgtaagcagaagcaggggataaagcttcgttgcttagatccact 24619297

                                                                            
Query: 405      gcattaagcaaacctctcccgcgtatttccctgataatatgaggaaatttctgctgaacc 464
                |||||||||||||| ||||| |||| |||||| || || || || ||| |||| ||||||
Sbjct: 24619298 gcattaagcaaacccctcccacgtacttcccttatgatttgcgggaatctctgttgaacc 24619357

                                                  
Query: 465      tcttgtaactggtccctgaactcctgacctaact 498
                |  |||| ||| || |||||||| || |||||||
Sbjct: 24619358 ttctgtagctgatctctgaactcttgtcctaact 24619391



 Score =  141 bits (71), Expect = 3e-30
 Identities = 92/99 (92%)
 Strand = Plus / Plus

                                                                            
Query: 588      cttccatgttctcctggcttgatacacagcatgatatccttatcagcaagaactgcactg 647
                ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 24619807 cttccatgttctcctggtttgatacacagcataatatccttatctgcaagaaccgcactg 24619866

                                                       
Query: 648      accggaactactccagcacctagtgccttgcctagaatc 686
                || ||||||||||||||||| || |||||||||||||||
Sbjct: 24619867 acaggaactactccagcaccaagggccttgcctagaatc 24619905



 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                            
Query: 507      ctttcaacaagaccttcatctttgaccactttcagtgatgcgattgccacagcacttgcc 566
                |||||||| |||||||||||| | || |||||||||||||| | ||||||||||||||||
Sbjct: 24619516 ctttcaacgagaccttcatctgtaactactttcagtgatgcaactgccacagcacttgcc 24619575

                                       
Query: 567      aatgggtttccaccaaatgtact 589
                |||||||| ||||||||||||||
Sbjct: 24619576 aatgggttcccaccaaatgtact 24619598



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 85/97 (87%)
 Strand = Plus / Plus

                                                                            
Query: 180      gattctggtttcttgatctgcttctgcaactgcggcaagtcatgctcaagcacatcgcta 239
                |||||||  ||||||||||||||||||| ||| |||| ||||||||||||||||||||| 
Sbjct: 24615292 gattctgtcttcttgatctgcttctgcagctgtggcaggtcatgctcaagcacatcgctg 24615351

                                                     
Query: 240      agtgcctttgatgcctctgcgagctcctcgggactga 276
                |  ||||| ||||| ||||| |||||||| |||||||
Sbjct: 24615352 aacgccttcgatgcttctgcaagctcctcaggactga 24615388



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 623     atccttatcagcaagaactgcact 646
               |||||||||| |||||||||||||
Sbjct: 7724315 atccttatcaacaagaactgcact 7724338

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>emb|AM228955.1| Pinus sylvestris mRNA for putative ornithine aminotransferase (dOAT
            gene)
          Length = 1967

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 113/137 (82%)
 Strand = Plus / Minus

                                                                        
Query: 552  gccacagcacttgccaatgggtttccaccaaatgtacttccatgttctcctggcttgata 611
            ||||||||||| |||| ||||||||| ||||| || ||||||||||| || ||||| |  
Sbjct: 1312 gccacagcactagccagtgggtttcctccaaaagtgcttccatgttccccgggcttaaag 1253

                                                                        
Query: 612  cacagcatgatatccttatcagcaagaactgcactgaccggaactactccagcacctagt 671
            || ||||| |||||||| |||||||| || || ||||| ||||  |||||  |||||| |
Sbjct: 1252 caaagcattatatccttgtcagcaagcacagcgctgactggaagcactcccccacctaat 1193

                             
Query: 672  gccttgcctagaatcac 688
            ||||| ||||| |||||
Sbjct: 1192 gccttccctaggatcac 1176

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>emb|AJ278819.1|MTR278819 Medicago truncatula mRNA for delta ornithine aminotransferase (oat
            gene)
          Length = 1696

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 103/128 (80%)
 Strand = Plus / Minus

                                                                        
Query: 525  tctttgaccactttcagtgatgcgattgccacagcacttgccaatgggtttccaccaaat 584
            ||||||| |||||  ||||| || || || || ||||| |||||||| ||||||||||| 
Sbjct: 1102 tctttgatcacttcaagtgaggcaatggcaactgcactggccaatggatttccaccaaaa 1043

                                                                        
Query: 585  gtacttccatgttctcctggcttgatacacagcatgatatccttatcagcaagaactgca 644
            ||||||||||| | ||| || || ||||| ||||| |  || || || ||||||||||| 
Sbjct: 1042 gtacttccatgctgtccaggttttatacaaagcatcacttctttgtctgcaagaactgcg 983

                    
Query: 645  ctgaccgg 652
            || |||||
Sbjct: 982  ctaaccgg 975

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>gb|AF177590.1|AF177590 Vitis vinifera ornithine aminotransferase mRNA, complete cds
          Length = 1783

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                        
Query: 558  gcacttgccaatgggtttccaccaaatgtacttccatgttctcctggcttgatacacagc 617
            ||||| ||||| || ||| | ||||||||||||||||| ||||||||||  ||| | |||
Sbjct: 1057 gcactcgccaaaggatttactccaaatgtacttccatgctctcctggctgaatagagagc 998

                                              
Query: 618  atgatatccttatcagcaagaactgcactgaccg 651
            || | ||| || || ||||| |||||||| ||||
Sbjct: 997  attacatctttgtctgcaagcactgcactaaccg 964

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>gb|DQ224372.1| Glycine max ornithine aminotransferase mRNA, complete cds
          Length = 1766

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 86/107 (80%)
 Strand = Plus / Minus

                                                                        
Query: 540  agtgatgcgattgccacagcacttgccaatgggtttccaccaaatgtacttccatgttct 599
            ||||| || ||||| || ||||| |||| ||| |||||||| || ||||||||||| | |
Sbjct: 1076 agtgaggcaattgcaactgcactggccagtggatttccaccgaaggtacttccatgctgt 1017

                                                           
Query: 600  cctggcttgatacacagcatgatatccttatcagcaagaactgcact 646
            || || |  ||||| ||||| | ||| || || ||||||||||||||
Sbjct: 1016 ccaggttgtatacaaagcatcacatctttgtctgcaagaactgcact 970

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>emb|AL157877.11| Human DNA sequence from clone RP11-2P5 on chromosome 13 Contains the 5'
             end of a novel gene, the gene for suppressor of G2 allele
             of SKP1, S. cerevisiae, the 5' end of a gene similar to
             TPTE and PTEN homologous inositol lipid phosphatase (TPIP)
             , a pseudogene similar to part of regulator of G-protein
             signalling 17 (RGS17), the WBP4 gene for WW domain binding
             protein 4 (formin binding protein 21) and 4 CpG islands,
             complete sequence
          Length = 198567

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 76    aaatccatgttctgttattcca 97
             ||||||||||||||||||||||
Sbjct: 52696 aaatccatgttctgttattcca 52675

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>ref|NM_123987.2| Arabidopsis thaliana delta-OAT; ornithine-oxo-acid transaminase
           AT5G46180 (delta-OAT) mRNA, complete cds
          Length = 1719

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 627 ttatcagcaagaactgcactgaccggaactactccagcacctagtgccttgcctagaatc 686
           ||||||||||| |||||||| || |||| ||||||  |||||| ||| || || || |||
Sbjct: 929 ttatcagcaagcactgcacttactggaattactcctccacctaatgctttcccaagtatc 870

                
Query: 687 accat 691
           |||||
Sbjct: 869 accat 865

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>ref|XM_739667.1| Plasmodium chabaudi chabaudi ornithine aminotransferase,
           (PC001183.02.0) partial mRNA
          Length = 1245

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 567 aatgggtttccaccaaatgtacttccatgttctcctggcttgata 611
           |||||||| |||||| |||||   |||||||||||||| ||||||
Sbjct: 893 aatgggttaccaccatatgtagaaccatgttctcctggtttgata 849

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>gb|BT023421.1| Arabidopsis thaliana At5g46180 gene, complete cds
          Length = 1532

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 627 ttatcagcaagaactgcactgaccggaactactccagcacctagtgccttgcctagaatc 686
           ||||||||||| |||||||| || |||| ||||||  |||||| ||| || || || |||
Sbjct: 942 ttatcagcaagcactgcacttactggaattactcctccacctaatgctttcccaagtatc 883

                
Query: 687 accat 691
           |||||
Sbjct: 882 accat 878

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>gb|AY505014.1| Thermomicrobia bacterium PRI-1686 alpha-L-rhamnosidase B (rhmB) gene,
            complete cds
          Length = 2865

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 104  cccatctctggtcggatgaac 124
            |||||||||||||||||||||
Sbjct: 2219 cccatctctggtcggatgaac 2239

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>gb|AC106720.8| Homo sapiens 3 BAC RP11-26M20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 92354

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 514   caagaccttcatctttgaccacttt 538
             ||||| |||||||||||||||||||
Sbjct: 40245 caagagcttcatctttgaccacttt 40221

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>emb|BX005108.8| Zebrafish DNA sequence from clone CH211-268B13 in linkage group 9,
             complete sequence
          Length = 171835

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 184   ctggtttcttgatctgcttct 204
             |||||||||||||||||||||
Sbjct: 87483 ctggtttcttgatctgcttct 87463

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>gb|DQ066534.1| Skunkpox virus isolate skk-pox RNA polymerase subunit 132 gene,
          partial cds
          Length = 2177

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 3  tatttacagtgaatgtagcaa 23
          |||||||||||||||||||||
Sbjct: 67 tatttacagtgaatgtagcaa 47

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>gb|AC163331.8| Mus musculus chromosome 5, clone RP23-50G20, complete sequence
          Length = 257982

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 376    ggtatagagctttgctgcttaggt 399
              |||||||||||||||| |||||||
Sbjct: 210830 ggtatagagctttgctacttaggt 210807

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>gb|AC149233.1| Pan troglodytes chromosome X clone RP43-034P07 map human ortholog q28,
             complete sequence
          Length = 169963

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 427   gtatttccctgataatatga 446
             ||||||||||||||||||||
Sbjct: 97253 gtatttccctgataatatga 97234

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>gb|AC121279.7| Mus musculus chromosome 3, clone RP23-4F17, complete sequence
          Length = 207763

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 518    accttcatctttgaccactt 537
              ||||||||||||||||||||
Sbjct: 149949 accttcatctttgaccactt 149968

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>ref|XM_801885.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053508669.10) partial mRNA
          Length = 3072

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 574  ttccaccaaatgtacttcca 593
            ||||||||||||||||||||
Sbjct: 1051 ttccaccaaatgtacttcca 1032

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>ref|XM_804108.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053508809.40) partial mRNA
          Length = 3057

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 574  ttccaccaaatgtacttcca 593
            ||||||||||||||||||||
Sbjct: 1033 ttccaccaaatgtacttcca 1014

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>gb|AC164631.5| Mus musculus 6 BAC RP23-359M3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 237469

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    agtgcctttgatgcctctgc 259
              ||||||||||||||||||||
Sbjct: 139214 agtgcctttgatgcctctgc 139195

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>gb|AF262215.1| Oryza sativa guanine nucleotide-exchange protein GEP2 (GEP2) mRNA,
            partial cds
          Length = 5678

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 623  atccttatcagcaagaactgcact 646
            |||||||||| |||||||||||||
Sbjct: 4057 atccttatcaacaagaactgcact 4034

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 330      atgcccctctcctttagctt 349
                ||||||||||||||||||||
Sbjct: 28519842 atgcccctctcctttagctt 28519861

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>gb|AC010145.10| Homo sapiens BAC clone RP11-355H10 from 2, complete sequence
          Length = 198960

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   gaatgcccctctcctttagc 347
             ||||||||||||||||||||
Sbjct: 14930 gaatgcccctctcctttagc 14949

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>gb|AC011444.5|AC011444 Homo sapiens chromosome 19 clone CTC-232P5, complete sequence
          Length = 133925

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 473   ctggtccctgaactcctgac 492
             ||||||||||||||||||||
Sbjct: 88422 ctggtccctgaactcctgac 88441

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>dbj|AP006268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0037D09
          Length = 140470

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   atgcccctctcctttagctt 349
             ||||||||||||||||||||
Sbjct: 85594 atgcccctctcctttagctt 85613

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>dbj|AP004343.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0618H09
          Length = 142306

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   atgcccctctcctttagctt 349
             ||||||||||||||||||||
Sbjct: 77383 atgcccctctcctttagctt 77402

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>dbj|BS000126.1| Pan troglodytes chromosome 22 clone:PTB-128A24, map 22, complete
              sequences
          Length = 207747

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     tgaaaaatccatgttctgtt 91
              ||||||||||||||||||||
Sbjct: 130297 tgaaaaatccatgttctgtt 130278

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>gb|AC138398.9| Mus musculus chromosome 5, clone RP23-309P20, complete sequence
          Length = 190846

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 376   ggtatagagctttgctgcttaggt 399
             |||||||||||||||| |||||||
Sbjct: 53409 ggtatagagctttgctacttaggt 53432

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>dbj|AP001730.1| Homo sapiens genomic DNA, chromosome 21q, section 74/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     tgaaaaatccatgttctgtt 91
              ||||||||||||||||||||
Sbjct: 293458 tgaaaaatccatgttctgtt 293439

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>gb|AC002368.1|AC002368 Homo sapiens Xq28 BAC PAC and cosmid clones containing FMR2 gene exons
             1,2, and 3, complete sequence
          Length = 324816

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 427   gtatttccctgataatatga 446
             ||||||||||||||||||||
Sbjct: 56214 gtatttccctgataatatga 56195

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>gb|AC118672.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0078P24, from chromosome 3, complete sequence
          Length = 146930

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 623    atccttatcagcaagaactgcact 646
              |||||||||| |||||||||||||
Sbjct: 126314 atccttatcaacaagaactgcact 126291

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>gb|AF008243.1|AF008243 Homo sapiens cosmid clone C102H1064 from 21q22.2, complete sequence
          Length = 34037

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 72   tgaaaaatccatgttctgtt 91
            ||||||||||||||||||||
Sbjct: 4781 tgaaaaatccatgttctgtt 4800

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>dbj|AP000160.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone
             D47-S479, segment 12/16, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    tgaaaaatccatgttctgtt 91
             ||||||||||||||||||||
Sbjct: 40875 tgaaaaatccatgttctgtt 40856

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>dbj|AP000018.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 9/13
          Length = 100000

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    tgaaaaatccatgttctgtt 91
             ||||||||||||||||||||
Sbjct: 75271 tgaaaaatccatgttctgtt 75252

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>dbj|AP001417.2| Homo sapiens genomic DNA, chromosome 21q22.2, LB7T-ERG region,
             clone:D40
          Length = 89723

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    tgaaaaatccatgttctgtt 91
             ||||||||||||||||||||
Sbjct: 24023 tgaaaaatccatgttctgtt 24004


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,372,803
Number of Sequences: 3902068
Number of extensions: 6372803
Number of successful extensions: 231206
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 230896
Number of HSP's gapped (non-prelim): 308
length of query: 693
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 670
effective length of database: 17,143,297,704
effective search space: 11486009461680
effective search space used: 11486009461680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result