ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd20j22 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 176 bits (89), Expect = 6e-41 Identities = 140/157 (89%) Strand = Plus / Plus Query: 265 accagattatgcagtagtagagaagccatccctgacaacatggatgaaaggaggtcttga 324 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct: 32162584 accagattatgcagtagttgagaagccctccctgacaacatggatgaaaggaggtcttga 32162643 Query: 325 ttacattctacttagaagtatagacactgatggaattcggatcatttcaagtgttcttgg 384 || || | |||| ||| |||| || ||||||||||| |||||| ||||||||||||| Sbjct: 32162644 ctatatagttcttaaaagcctagatacagatggaattcgcatcattgcaagtgttcttgg 32162703 Query: 385 tcaaagtatcgctcttgatcattacatacagcaggta 421 |||||||| ||||||||||||||||||| ||||||| Sbjct: 32162704 ccaaagtattgctcttgatcattacatacggcaggta 32162740
>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0403C05 Length = 151085 Score = 176 bits (89), Expect = 6e-41 Identities = 140/157 (89%) Strand = Plus / Plus Query: 265 accagattatgcagtagtagagaagccatccctgacaacatggatgaaaggaggtcttga 324 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct: 33337 accagattatgcagtagttgagaagccctccctgacaacatggatgaaaggaggtcttga 33396 Query: 325 ttacattctacttagaagtatagacactgatggaattcggatcatttcaagtgttcttgg 384 || || | |||| ||| |||| || ||||||||||| |||||| ||||||||||||| Sbjct: 33397 ctatatagttcttaaaagcctagatacagatggaattcgcatcattgcaagtgttcttgg 33456 Query: 385 tcaaagtatcgctcttgatcattacatacagcaggta 421 |||||||| ||||||||||||||||||| ||||||| Sbjct: 33457 ccaaagtattgctcttgatcattacatacggcaggta 33493
>ref|NM_191360.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1218 Score = 167 bits (84), Expect = 6e-38 Identities = 135/152 (88%) Strand = Plus / Plus Query: 269 gattatgcagtagtagagaagccatccctgacaacatggatgaaaggaggtcttgattac 328 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || Sbjct: 664 gattatgcagtagttgagaagccctccctgacaacatggatgaaaggaggtcttgactat 723 Query: 329 attctacttagaagtatagacactgatggaattcggatcatttcaagtgttcttggtcaa 388 || | |||| ||| |||| || ||||||||||| |||||| ||||||||||||| ||| Sbjct: 724 atagttcttaaaagcctagatacagatggaattcgcatcattgcaagtgttcttggccaa 783 Query: 389 agtatcgctcttgatcattacatacagcaggt 420 ||||| ||||||||||||||||||| |||||| Sbjct: 784 agtattgctcttgatcattacatacggcaggt 815
>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence Length = 1440588 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 245 atgaaatttgtttcaaaattacc 267 ||||||||||||||||||||||| Sbjct: 1011167 atgaaatttgtttcaaaattacc 1011145
>gb|AC022017.8| Homo sapiens chromosome 10 clone RP11-210G22, complete sequence Length = 180165 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 125 acctgcataagtatataggcacccaa 150 |||||||||||||||||||| ||||| Sbjct: 121503 acctgcataagtatataggcccccaa 121478
>gb|AC093851.5| Homo sapiens chromosome 4 clone RP11-499N1, complete sequence Length = 200968 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 424 gtgattaagcaaagtcatcaaacta 448 |||||||| |||||||||||||||| Sbjct: 157162 gtgattaatcaaagtcatcaaacta 157186
>gb|AF325198.1|AF325198 Triticum aestivum LRR14 (Lrr14), TAK14 (TAK14), and LRK14 (Lrk14) genes, complete cds; and unknown gene Length = 43606 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 610 tcctatttactagcattgaca 630 ||||||||||||||||||||| Sbjct: 9501 tcctatttactagcattgaca 9521
>gb|AC074329.2|AC074329 Mus musculus strain C57BL/6J chromosome 12 clone RP23-257D2, complete sequence Length = 207872 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 agattatgcagtagtagagaa 288 ||||||||||||||||||||| Sbjct: 66409 agattatgcagtagtagagaa 66389
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region locus, strain C57BL/6 Length = 2500000 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 268 agattatgcagtagtagagaa 288 ||||||||||||||||||||| Sbjct: 972178 agattatgcagtagtagagaa 972198
>gb|U76215.1|TAU76215 Triticum aestivum NBS-LRR type protein pseudogene, complete sequence Length = 3696 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 610 tcctatttactagcattgaca 630 ||||||||||||||||||||| Sbjct: 3508 tcctatttactagcattgaca 3528
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tttgagtgaagcctcatttt 58 |||||||||||||||||||| Sbjct: 31188475 tttgagtgaagcctcatttt 31188494
>gb|AC133933.4| Mus musculus BAC clone RP24-333C16 from chromosome 18, complete sequence Length = 219699 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 603 tgaactttcctatttactagcattgaca 630 |||| ||||| ||||||||||||||||| Sbjct: 85599 tgaagtttcccatttactagcattgaca 85626
>gb|U91324.1|HUU91324 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-100B4 ~complete genomic sequence, complete sequence Length = 174826 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 atttccatgtggttgcaagg 467 |||||||||||||||||||| Sbjct: 97877 atttccatgtggttgcaagg 97858
>emb|AL157882.5| Human DNA sequence from clone RP11-202I11 on chromosome 9q21.32-22.2 Contains the 5' end of the AGTPBP1 gene for ATP/GTP binding protein 1 (NNA1, KIAA1035), a novel gene, the 5' end of a pseudogene similar to part of a novel protein (DKFZp434D0917) and a CpG island, complete sequence Length = 172903 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 ctaattacttatacaataca 105 |||||||||||||||||||| Sbjct: 81582 ctaattacttatacaataca 81601
>emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035M09, complete sequence Length = 152732 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tgaacctctattatattctc 239 |||||||||||||||||||| Sbjct: 146651 tgaacctctattatattctc 146632
>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03, complete sequence Length = 179798 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tgaacctctattatattctc 239 |||||||||||||||||||| Sbjct: 10342 tgaacctctattatattctc 10323
>gb|AC116991.2| Homo sapiens chromosome 3 clone RP11-264M9, complete sequence Length = 152794 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 gaaatttgtttcaaaattac 266 |||||||||||||||||||| Sbjct: 128864 gaaatttgtttcaaaattac 128883
>gb|AC119151.1| Homo sapiens chromosome 5 clone CTD-2582L22, complete sequence Length = 176204 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 111 tatcatgtaactgcacctgcataa 134 |||||| ||||||||||||||||| Sbjct: 76265 tatcatctaactgcacctgcataa 76288
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence Length = 128017 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tttgagtgaagcctcatttt 58 |||||||||||||||||||| Sbjct: 109116 tttgagtgaagcctcatttt 109135
>gb|AC104302.2| Homo sapiens chromosome 3 clone RP11-379L20, complete sequence Length = 206872 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 gaaatttgtttcaaaattac 266 |||||||||||||||||||| Sbjct: 169726 gaaatttgtttcaaaattac 169707
>gb|AC016553.6| Homo sapiens chromosome 5 clone CTC-305H11, complete sequence Length = 125837 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aataaaattacaacgttaat 185 |||||||||||||||||||| Sbjct: 10681 aataaaattacaacgttaat 10700
>ref|XM_702449.1| PREDICTED: Danio rerio similar to Heterogeneous nuclear ribonucleoprotein L (hnRNP L) (P/OKcl.14), transcript variant 8 (LOC573096), mRNA Length = 2090 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 attttccagagagcaaatat 73 |||||||||||||||||||| Sbjct: 2053 attttccagagagcaaatat 2034
>ref|XM_702448.1| PREDICTED: Danio rerio similar to Heterogeneous nuclear ribonucleoprotein L (hnRNP L) (P/OKcl.14), transcript variant 7 (LOC573096), mRNA Length = 2123 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 attttccagagagcaaatat 73 |||||||||||||||||||| Sbjct: 2086 attttccagagagcaaatat 2067
>ref|XM_702447.1| PREDICTED: Danio rerio similar to Heterogeneous nuclear ribonucleoprotein L (hnRNP L) (P/OKcl.14), transcript variant 6 (LOC573096), mRNA Length = 2156 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 attttccagagagcaaatat 73 |||||||||||||||||||| Sbjct: 2119 attttccagagagcaaatat 2100
>ref|XM_702446.1| PREDICTED: Danio rerio similar to Heterogeneous nuclear ribonucleoprotein L (hnRNP L) (P/OKcl.14), transcript variant 5 (LOC573096), mRNA Length = 2165 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 attttccagagagcaaatat 73 |||||||||||||||||||| Sbjct: 2128 attttccagagagcaaatat 2109
>ref|XM_702445.1| PREDICTED: Danio rerio similar to Heterogeneous nuclear ribonucleoprotein L (hnRNP L) (P/OKcl.14), transcript variant 4 (LOC573096), mRNA Length = 2008 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 attttccagagagcaaatat 73 |||||||||||||||||||| Sbjct: 1971 attttccagagagcaaatat 1952
>ref|XM_702444.1| PREDICTED: Danio rerio similar to Heterogeneous nuclear ribonucleoprotein L (hnRNP L) (P/OKcl.14), transcript variant 3 (LOC573096), mRNA Length = 1477 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 attttccagagagcaaatat 73 |||||||||||||||||||| Sbjct: 1440 attttccagagagcaaatat 1421
>ref|XM_679468.1| PREDICTED: Danio rerio similar to Heterogeneous nuclear ribonucleoprotein L (hnRNP L) (P/OKcl.14), transcript variant 1 (LOC573096), mRNA Length = 2066 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 attttccagagagcaaatat 73 |||||||||||||||||||| Sbjct: 2029 attttccagagagcaaatat 2010
>gb|AC020979.6| Homo sapiens chromosome 5 clone RP1_166C2, complete sequence Length = 82078 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aataaaattacaacgttaat 185 |||||||||||||||||||| Sbjct: 78850 aataaaattacaacgttaat 78869
>emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 in linkage group 15, complete sequence Length = 205794 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 attttccagagagcaaatat 73 |||||||||||||||||||| Sbjct: 118057 attttccagagagcaaatat 118076
>gb|AC022416.5|AC022416 Homo sapiens chromosome 5 clone CTC-489P21, complete sequence Length = 139980 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 628 acagattttccagtaatttt 647 |||||||||||||||||||| Sbjct: 70109 acagattttccagtaatttt 70090
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tgaacctctattatattctc 239 |||||||||||||||||||| Sbjct: 30742920 tgaacctctattatattctc 30742901
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 aaatttgtttcaaaattacc 267 |||||||||||||||||||| Sbjct: 26334830 aaatttgtttcaaaattacc 26334849
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tttgagtgaagcctcatttt 58 |||||||||||||||||||| Sbjct: 31278998 tttgagtgaagcctcatttt 31279017
>gb|AC007743.3| Homo sapiens BAC clone RP11-481J13 from 2, complete sequence Length = 141836 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 gagaagccatccctgacaac 303 |||||||||||||||||||| Sbjct: 57299 gagaagccatccctgacaac 57318
>emb|AL773518.3| Mouse DNA sequence from clone RP24-231F12 on chromosome 4, complete sequence Length = 205765 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 218 cctgaacctctattatattctcacgtga 245 |||||| ||||||||| ||||||||||| Sbjct: 161010 cctgaaactctattattttctcacgtga 160983
>emb|BX248135.5| Zebrafish DNA sequence from clone CH211-106J4 in linkage group 17, complete sequence Length = 152463 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 567 tttaacattacacctttact 586 |||||||||||||||||||| Sbjct: 75450 tttaacattacacctttact 75431
>emb|BX005217.5| Zebrafish DNA sequence from clone CH211-87L3 in linkage group 15, complete sequence Length = 154452 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 attttccagagagcaaatat 73 |||||||||||||||||||| Sbjct: 144954 attttccagagagcaaatat 144935
>gb|AY940097.1| Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 4 (XRCC4) gene, complete cds Length = 279061 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 628 acagattttccagtaatttt 647 |||||||||||||||||||| Sbjct: 24666 acagattttccagtaatttt 24685
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 aaatttgtttcaaaattacc 267 |||||||||||||||||||| Sbjct: 26262998 aaatttgtttcaaaattacc 26263017
>emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb0016A10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133978 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 aaatttgtttcaaaattacc 267 |||||||||||||||||||| Sbjct: 98814 aaatttgtttcaaaattacc 98833
>emb|AL845347.4|CNS08CB9 Oryza sativa chromosome 12, . BAC OSJNBb0101I10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131689 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 aaatttgtttcaaaattacc 267 |||||||||||||||||||| Sbjct: 49102 aaatttgtttcaaaattacc 49121
>gb|AC140456.4| Mus musculus BAC clone RP23-49D19 from 18, complete sequence Length = 172872 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 603 tgaactttcctatttactagcattgaca 630 |||| ||||| ||||||||||||||||| Sbjct: 7189 tgaagtttcccatttactagcattgaca 7162
>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial variable region, strain 129/Sv Length = 1382053 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 367 catttcaagtgttcttggtcaaag 390 |||||||| ||||||||||||||| Sbjct: 649369 catttcaaatgttcttggtcaaag 649346
>dbj|AP004626.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT01J10a, TM0090a, complete sequence Length = 56179 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 attcggatcatttcaagtgt 378 |||||||||||||||||||| Sbjct: 13038 attcggatcatttcaagtgt 13057 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,034,245 Number of Sequences: 3902068 Number of extensions: 6034245 Number of successful extensions: 123493 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123193 Number of HSP's gapped (non-prelim): 297 length of query: 662 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 639 effective length of database: 17,143,297,704 effective search space: 10954567232856 effective search space used: 10954567232856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
