Clone Name | rbasd20j19 |
---|---|
Clone Library Name | barley_pub |
>SOS_DROME (P26675) Protein son of sevenless| Length = 1596 Score = 34.3 bits (77), Expect = 0.39 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 8/112 (7%) Frame = +3 Query: 375 SSSTTKPLKYSKSVRSKNL-------TMMQYIHSPDISYSLVLTLHFHTYEYHHQNQFQY 533 SS+TT PL + S S N+ T Y H + H Y HHQ+ + Sbjct: 1474 SSTTTSPLTPAMSPMSPNIPSHPVESTSSSYAHQLRMRQQQQQQTHPAIYSQHHQHHATH 1533 Query: 534 LGHHQNQRCHFPVLSNP-RNRPIDKVL*PCRKNRHCSPENLSRRIALSSSLY 686 L HH +Q SNP ++R K P + +P+ L + +LS++ Y Sbjct: 1534 LPHHPHQH-----HSNPTQSRSSPKEFFPIATSLEGTPK-LPPKPSLSANFY 1579
>AXN_XENLA (Q9YGY0) Axin (Axis inhibition protein) (xAxin)| Length = 842 Score = 33.1 bits (74), Expect = 0.86 Identities = 30/107 (28%), Positives = 39/107 (36%), Gaps = 4/107 (3%) Frame = +3 Query: 207 FGFRCSDCNCVPSEFRCSDCNELLPEYCLQSTLQTIRAEPQFIFPLYKQKPPLGDFSSST 386 F R S+ CV + R D +E PE L +Q + P Q P G S + Sbjct: 447 FNSRYSETGCVGMQIR--DAHEENPESILDEHVQRVMKTPGC------QSPGTGRHSPKS 498 Query: 387 TKPLKYSKSVRSKNLTMMQYIHSPDISYSLVLT----LHFHTYEYHH 515 P + +L MQ H S S LH H + YHH Sbjct: 499 RSPDGHLSKTLPGSLGTMQTGHGKHSSKSTAKVDSGNLHHHKHVYHH 545
>DISC_DROME (P23792) Protein disconnected| Length = 568 Score = 31.2 bits (69), Expect = 3.3 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 7/92 (7%) Frame = +3 Query: 309 TIRAEPQFIFP------LYKQKPPLGDFSSSTTKPLKYSKSVRSKNLTMMQYIHSPDISY 470 T +A P P L K PP+ S + S +++++ QY H + Sbjct: 459 TSQAPPTAFLPAGSPVDLAKDSPPMWSLLSEMYR----SMLLKTQH---QQYNHHHQLQQ 511 Query: 471 SLVLTLHFH-TYEYHHQNQFQYLGHHQNQRCH 563 H H T +HHQ Q +LGHH H Sbjct: 512 QHQQEQHHHLTLSHHHQEQHHHLGHHHMGHHH 543
>ADA21_HUMAN (Q9UKJ8) ADAM 21 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 21) Length = 722 Score = 31.2 bits (69), Expect = 3.3 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Frame = +3 Query: 201 CSFGFRCSDCNCVPSEFRC-SDCNEL-LPEYC 290 C+FG C DC +PS C + NE LPE+C Sbjct: 446 CAFGLCCKDCKFMPSGELCRQEVNECDLPEWC 477
>BRC1_DROME (Q01295) Broad-complex core-protein isoforms 1/2/3/4/5| Length = 727 Score = 31.2 bits (69), Expect = 3.3 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 4/106 (3%) Frame = +3 Query: 246 EFRCSDCNELLPEYC-LQSTLQTIRAEPQFIFPLYKQKPPLGDFSS---STTKPLKYSKS 413 +FRC+ CN+ L L+ +Q + P K P+ + S+ L+ KS Sbjct: 635 DFRCNPCNKNLSSLTRLKRHIQNVHMRPT--------KEPVCNICKRVYSSLNSLRNHKS 686 Query: 414 VRSKNLTMMQYIHSPDISYSLVLTLHFHTYEYHHQNQFQYLGHHQN 551 + +NL + P + + F YH Q+Q Q L HH + Sbjct: 687 IYHRNLKQPK--QEPGVGATQAAANSF----YHQQHQQQQLNHHSS 726
>TYSY_BPT4 (P00471) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)| Length = 286 Score = 31.2 bits (69), Expect = 3.3 Identities = 20/79 (25%), Positives = 34/79 (43%) Frame = +3 Query: 228 CNCVPSEFRCSDCNELLPEYCLQSTLQTIRAEPQFIFPLYKQKPPLGDFSSSTTKPLKYS 407 CN +P + S N + ++ + +R EP+ + L P ST + LKY Sbjct: 202 CNLIPGDLIFSGGNTHIYMNHVEQCKEILRREPKELCELVISGLPYKFRYLSTKEQLKYV 261 Query: 408 KSVRSKNLTMMQYIHSPDI 464 +R K+ + Y+ P I Sbjct: 262 LKLRPKDFVLNNYVSHPPI 280
>PTPRR_MOUSE (Q62132) Receptor-type tyrosine-protein phosphatase R precursor (EC| 3.1.3.48) (Protein-tyrosine-phosphatase SL) (Phosphotyrosine phosphatase 13) Length = 656 Score = 31.2 bits (69), Expect = 3.3 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +3 Query: 444 YIHSPDISYSLVLTLHFHTYEYHHQNQFQYLGHHQNQRCHFP 569 Y HS DI SL + + + YH ++ Q HHQ FP Sbjct: 44 YDHSQDIKKSLDIAQEAYKHNYHSPSEVQISKHHQIINSAFP 85
>ADA29_HUMAN (Q9UKF5) ADAM 29 precursor (A disintegrin and metalloproteinase| domain 29) Length = 820 Score = 30.8 bits (68), Expect = 4.3 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Frame = +3 Query: 201 CSFGFRCSDCNCVPSEFRC-SDCNEL-LPEYC 290 C+FG C DC +PS C + NE LPE+C Sbjct: 437 CAFGLCCKDCKFLPSGKVCRKEVNECDLPEWC 468
>ADA20_HUMAN (O43506) ADAM 20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 20) Length = 726 Score = 30.4 bits (67), Expect = 5.6 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Frame = +3 Query: 201 CSFGFRCSDCNCVPSEFRC----SDCNELLPEYC 290 C+FG C DC +PS C +C+ LPE+C Sbjct: 447 CAFGICCKDCKFLPSGTLCRQQVGECD--LPEWC 478
>Y875_RICPR (Q9ZC92) Hypothetical protein RP875| Length = 174 Score = 30.4 bits (67), Expect = 5.6 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 4/28 (14%) Frame = -3 Query: 294 EDNIQEVIH----YNLNIGTRKEHNYNL 223 EDNI+E I+ YNL + T EHNYN+ Sbjct: 101 EDNIKEAINFIVTYNLTLITLVEHNYNI 128
>ADA22_XENLA (O42596) ADAM 22 precursor (A disintegrin and metalloproteinase| domain 22) (Metalloprotease-disintegrin MDC11b) (MDC11.2) Length = 935 Score = 30.0 bits (66), Expect = 7.3 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = +3 Query: 201 CSFGFRCSDCNCVPSEFRC----SDCNELLPEYCLQSTLQ 308 CS G CS+C P E C +DC+ +PE C +T Q Sbjct: 487 CSDGLCCSNCKFNPKEMLCREAVNDCD--IPETCTGNTSQ 524
>NR4A3_RAT (P51179) Orphan nuclear receptor NR4A3 (Nuclear hormone receptor| NOR-1/NOR-2) (Neuron-derived orphan receptor 1/2) Length = 628 Score = 30.0 bits (66), Expect = 7.3 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 495 HTYEYHHQNQFQYLGHHQNQRCHFPVLSNPRNRPIDKVL 611 H Y +HH + + HHQ Q+ P P + P D+VL Sbjct: 96 HGYHHHHHHHHHHHHHHQQQQPSIP----PPSGPEDEVL 130
>NFYB6_ARATH (Q84W66) Nuclear transcription factor Y subunit B-6 (AtNF-YB-6)| (Protein LEAFY COTYLEDON 1-LIKE) Length = 234 Score = 29.6 bits (65), Expect = 9.5 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +3 Query: 414 VRSKNLTMMQYIHSPDISYSLVLTLHFHTYEYHHQNQFQYLGHHQNQR 557 V+ N TM +Y +Y V +H Y Y HQN F + G+ N + Sbjct: 169 VKRPNGTMTEYG-----AYGPVPGIHMAQYHYRHQNGFVFSGNEPNSK 211
>PSD_MANSM (Q65RD9) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)| [Contains: Phosphatidylserine decarboxylase alpha chain; Phosphatidylserine decarboxylase beta chain] Length = 301 Score = 29.6 bits (65), Expect = 9.5 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 5/97 (5%) Frame = +3 Query: 222 SDCNCVPSEFRCSDCNELLPEYCLQS-----TLQTIRAEPQFIFPLYKQKPPLGDFSSST 386 +D C+P++ + S C + E LQ+ +L+ + A + + L+K G+F ++ Sbjct: 99 TDALCLPADGKISQCGHIDDELLLQAKGHSFSLRDLLAGDEELTRLFKD----GEFVTTY 154 Query: 387 TKPLKYSKSVRSKNLTMMQYIHSPDISYSLVLTLHFH 497 P Y + N T+ + I+ P +S+ L+ H Sbjct: 155 LSPRDYHRVHMPCNGTIRKMIYVPGELFSVNPFLNTH 191
>LRP1B_MOUSE (Q9JI18) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 29.6 bits (65), Expect = 9.5 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%) Frame = +3 Query: 186 CRL*LCS-FGFRCSDCNCVPSEFRCS---DCNELLPE 284 C++ CS FRC+D C+P RC+ DC++ E Sbjct: 2586 CKVSTCSTVEFRCADGTCIPRSARCNQNMDCSDASDE 2622
>SYE_ACIAD (Q6F7C8) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 502 Score = 29.6 bits (65), Expect = 9.5 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +3 Query: 513 HQNQFQYLGHHQNQRCHFPVLSNPRNRPIDK 605 HQ +QY G CH P+L NP + K Sbjct: 223 HQLLYQYFGWDMPTLCHMPLLRNPDKSKLSK 253
>LRP2_RAT (P98158) Low-density lipoprotein receptor-related protein 2 precursor| (Megalin) (Glycoprotein 330) (gp330) Length = 4660 Score = 26.9 bits (58), Expect(2) = 9.6 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +3 Query: 213 FRCSDCNCVPSEFRCSDCNE 272 FRC+D C+PS + C N+ Sbjct: 3766 FRCADQQCIPSRWVCDQEND 3785 Score = 20.8 bits (42), Expect(2) = 9.6 Identities = 6/10 (60%), Positives = 9/10 (90%) Frame = +1 Query: 178 FRCADCNCVP 207 FRCA+ +C+P Sbjct: 3727 FRCANHHCIP 3736 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,039,763 Number of Sequences: 219361 Number of extensions: 2041950 Number of successful extensions: 5716 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5021 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5660 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7196276819 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)