Clone Information

BLAST Search Result

Clone Name	rbasd20j18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	MPE1_YEAST (P35728) Protein MPE1	33	0.69
2	CANB_DROME (Q9VT65) Calpain B (EC 3.4.22.-) (Calcium-activated n...	33	0.69
3	FINC_RAT (P04937) Fibronectin precursor (FN)	33	0.69
4	FINC_MOUSE (P11276) Fibronectin precursor (FN)	33	0.69
5	SPR1A_RAT (Q63532) Cornifin A (Small proline-rich protein 1A) (S...	32	1.5
6	TPO_MOUSE (P40226) Thrombopoietin precursor (Megakaryocyte colon...	31	2.0
7	KCNH2_MOUSE (O35219) Potassium voltage-gated channel subfamily H...	31	2.6
8	STTP1_RAT (Q496Z0) Stat3-interacting protein (StIP1)	31	2.6
9	KCNH2_RAT (O08962) Potassium voltage-gated channel subfamily H m...	31	2.6
10	NAT6_HUMAN (Q93015) N-acetyltransferase 6 (EC 2.3.1.-) (Fus-2 pr...	30	3.4
11	STTP1_MOUSE (Q91WG4) Stat3-interacting protein (StIP1)	30	3.4
12	OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)	30	3.4
13	CO8A1_HUMAN (P27658) Collagen alpha-1(VIII) chain precursor (End...	30	4.5
14	SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-rel...	26	5.5
15	RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif p...	30	5.9
16	Y2507_BACFR (Q64TC3) Hypothetical transport protein BF2507	30	5.9
17	PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presy...	29	7.7
18	PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presyna...	29	7.7
19	GAG_WMSV (P03330) Gag polyprotein [Contains: Core protein p15; I...	29	7.7
20	IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2	29	7.7
21	IF2_BRUME (Q8YEB3) Translation initiation factor IF-2	29	7.7
22	IF2_BRUAB (Q57AA0) Translation initiation factor IF-2	29	7.7
23	IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2	29	7.7
24	LECC_PHYAM (Q9AYP9) Lectin-C precursor (PL-C)	29	7.7
25	FINC_HUMAN (P02751) Fibronectin precursor (FN) (Cold-insoluble g...	29	7.7
26	SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-rel...	26	9.0
27	WBP11_RAT (Q5PQQ2) WW domain-binding protein 11 (Wbp-11)	29	10.0
28	WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11)	29	10.0
29	WBP11_HUMAN (Q9Y2W2) WW domain-binding protein 11 (WBP-11) (SH3 ...	29	10.0
30	CN032_BOVIN (Q5E9L3) Protein C14orf32 homolog	29	10.0
31	RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subun...	29	10.0
32	R3HD1_HUMAN (Q15032) R3H domain-containing protein 1	29	10.0
33	GAG17_DROME (P04282) Retrovirus-related Gag polyprotein from cop...	29	10.0
34	GAG_FSVGA (P03337) Gag polyprotein [Contains: Core protein p15; ...	29	10.0
35	YM38_YEAST (Q03825) Hypothetical 85.0 kDa protein in HLJ1-SMP2 i...	29	10.0
36	SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100	29	10.0
37	DYN3_HUMAN (Q9UQ16) Dynamin-3 (EC 3.6.5.5) (Dynamin, testicular)...	29	10.0
38	RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun...	29	10.0
39	RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subun...	29	10.0

>MPE1_YEAST (P35728) Protein MPE1|
          Length = 441

 Score = 32.7 bits (73), Expect = 0.69
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
 Frame = -3

Query: 388 KQRKLEGKQLYLNQPRPCVTKLPTPTGPLARSLSPVIPNVAQIG---------PIGHRPF 236
           KQ +L G     NQP     KL  PTG    + +  +P     G         P G  PF
Sbjct: 356 KQEELHGSSKDGNQPETKKMKLMDPTGTAGLNNNTSLPTSVNNGGTPVPPVPLPFGIPPF 415

Query: 235 DLMPAIPLPFLP 200
              P  P+PF+P
Sbjct: 416 ---PMFPMPFMP 424

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>CANB_DROME (Q9VT65) Calpain B (EC 3.4.22.-) (Calcium-activated neutral|
           proteinase B) (CANP B) [Contains: Calpain B catalytic
           subunit 1; Calpain B catalytic subunit 2]
          Length = 925

 Score = 32.7 bits (73), Expect = 0.69
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
 Frame = -3

Query: 370 GKQLYLNQPRPCVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIPLP-FLPGI 194
           G  LY + P   V+ LP PT P+A    P         P  + P+   P  P P  +PG+
Sbjct: 106 GSGLYPSLPSANVSSLPYPTAPMAP--YPTGMPYPTGMPQPNLPYPAAPLAPYPSAMPGL 163

Query: 193 QGGPVAANAVPTQYNPFQQN---PLYRHPSFHP 104
            G P+    +PT   P Q N   P   +P+  P
Sbjct: 164 PGMPMPYAPMPTSPAP-QHNIGFPALPYPTAPP 195

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>FINC_RAT (P04937) Fibronectin precursor (FN)|
          Length = 2477

 Score = 32.7 bits (73), Expect = 0.69
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
 Frame = -3

Query: 385  QRKLEGKQLYLNQPRPCVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRP-----FDLMPA 221
            Q+   G+Q+   +     T  PT   P+     P +PNV +   IGH P     + L P 
Sbjct: 2132 QQPSVGQQMIFEEHGFRRTTPPTAATPVRLRPRPYLPNVDEEVQIGHVPRGDVDYHLYPH 2191

Query: 220  IPLPFLPGIQGGPVAANAVPTQYNPFQQNPLY 125
            +P    P    G  A +     + PFQ++  Y
Sbjct: 2192 VP-GLNPNASTGQEALSQTTISWTPFQESSEY 2222

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>FINC_MOUSE (P11276) Fibronectin precursor (FN)|
          Length = 2477

 Score = 32.7 bits (73), Expect = 0.69
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
 Frame = -3

Query: 385  QRKLEGKQLYLNQPRPCVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRP-----FDLMPA 221
            Q+   G+Q+   +     T  PT   P+     P +PNV +   IGH P     + L P 
Sbjct: 2132 QQPSVGQQMIFEEHGFRRTTPPTAATPVRLRPRPYLPNVDEEVQIGHVPRGDVDYHLYPH 2191

Query: 220  IPLPFLPGIQGGPVAANAVPTQYNPFQQNPLY 125
            +P    P    G  A +     + PFQ++  Y
Sbjct: 2192 VP-GLNPNASTGQEALSQTTISWTPFQESSEY 2222

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>SPR1A_RAT (Q63532) Cornifin A (Small proline-rich protein 1A) (SPR1A) (SPRR1)|
          Length = 152

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -3

Query: 346 PRPCVTKLPTPTGPLA-RSLSPVIPNVAQIGPIGHRPFDLMPAIPLPFLPGIQGGP 182
           P PC  K+P P  P A     PV+P   Q  P+   P    P +P P  P +   P
Sbjct: 93  PEPCQPKVPEPCHPKAPEPCHPVVPEPCQ--PVAPEP--CQPVVPEPCPPTVTPSP 144

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>TPO_MOUSE (P40226) Thrombopoietin precursor (Megakaryocyte colony-stimulating|
           factor) (Myeloproliferative leukemia virus oncogene
           ligand) (C-mpl ligand) (ML) (Megakaryocyte growth and
           development factor) (MGDF)
          Length = 356

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -3

Query: 310 GPLARSLSPVIPNVAQIGPIGHRPFDLMPAIPLPFLPGIQGGPVAANAVPTQYNPFQQNP 131
           G LA +L   +P    + P GH PF   PA+P       Q  P+  +   T  N    +P
Sbjct: 283 GSLAFNLQGGLPPSPSLAPDGHTPFPPSPALPTTHGSPPQLHPLFPDPSTTMPNSTAPHP 342

Query: 130 --LYRHP 116
             +Y HP
Sbjct: 343 VTMYPHP 349

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>KCNH2_MOUSE (O35219) Potassium voltage-gated channel subfamily H member 2|
            (Voltage-gated potassium channel subunit Kv11.1)
            (Ether-a-go-go related gene potassium channel 1) (ERG1)
            (MERG) (Merg1) (Ether-a-go-go related protein 1)
            (Eag-related protein 1)
          Length = 1162

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
 Frame = -3

Query: 340  PCVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIP-----------LPFLPGI 194
            P  + + TP GP   S SP++P    +GP+     D +  +             P LP  
Sbjct: 1079 PAYSAVTTP-GPGPTSASPLLP----VGPVPTLTLDSLSQVSQFVAFEELPAGAPELP-- 1131

Query: 193  QGGPVAANAVPTQYNPFQQNPLYRHPS 113
            Q GP    ++P Q       PL+RH S
Sbjct: 1132 QDGPTRRLSLPGQLGALTSQPLHRHGS 1158

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>STTP1_RAT (Q496Z0) Stat3-interacting protein (StIP1)|
          Length = 821

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 305 SGKISITCDSECGTDWSHWTSAI*SNACNSSTIFTRNSRWTSCS 174
           SGKI I   S+   +   WTS + +    S T+  R   W SCS
Sbjct: 744 SGKICIYSWSKTNQETKDWTSCVETTPSQSHTLGIRRLCWKSCS 787

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>KCNH2_RAT (O08962) Potassium voltage-gated channel subfamily H member 2|
            (Voltage-gated potassium channel subunit Kv11.1)
            (Ether-a-go-go-related gene potassium channel 1) (ERG1)
            (r-ERG) (RERG) (Ether-a-go-go-related protein 1)
            (Eag-related protein 1)
          Length = 1163

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
 Frame = -3

Query: 340  PCVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIP-----------LPFLPGI 194
            P  + + TP GP   S SP++P    +GP+     D +  +             P LP  
Sbjct: 1080 PAYSAVTTP-GPGPTSTSPLLP----VGPVPTLTLDSLSQVSQFVAFEELPAGAPELP-- 1132

Query: 193  QGGPVAANAVPTQYNPFQQNPLYRHPS 113
            Q GP    ++P Q       PL+RH S
Sbjct: 1133 QDGPTRRLSLPGQLGALTSQPLHRHGS 1159

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>NAT6_HUMAN (Q93015) N-acetyltransferase 6 (EC 2.3.1.-) (Fus-2 protein) (Fusion|
           2 protein)
          Length = 286

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
 Frame = -3

Query: 316 PTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIPLP----FLPGIQGGPVAANAVPTQYN 149
           PT P  R         AQ  P G +   L P  PLP      P +  GP + + + TQY 
Sbjct: 213 PTAPSPRPPRKAPNLTAQAAPRGPKGPPLPPPPPLPECLTISPPVPSGPPSKSLLETQYQ 272

Query: 148 PFQQNPLY 125
             +  P++
Sbjct: 273 NVRGRPIF 280

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>STTP1_MOUSE (Q91WG4) Stat3-interacting protein (StIP1)|
          Length = 831

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 305 SGKISITCDSECGTDWSHWTSAI*SNACNSSTIFTRNSRWTSCS 174
           SGKI I   ++   + + WTS + +N   S ++  R   W SCS
Sbjct: 746 SGKICIYSWNKTNQEINDWTSCVETNPSQSHSLGIRRLCWKSCS 789

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>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 21/93 (22%)
 Frame = -3

Query: 346 PRPCVTKLPTPTGPL-ARSLSPVIPNVAQI-----------GPIGHRPFDLMPAIPLPFL 203
           P+  +   P+PTG   +RS+SP +     I           GP+   P       P+P  
Sbjct: 505 PQQVMRPTPSPTGSSGSRSMSPAVAQNHPISRPASNQSSSGGPMQQPPVGAGGPPPMPPH 564

Query: 202 PGIQGGP---------VAANAVPTQYNPFQQNP 131
           PG+ GGP          A+N+  +  N  QQ P
Sbjct: 565 PGMPGGPPQQQQSQQQQASNSASSASNSPQQTP 597

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>CO8A1_HUMAN (P27658) Collagen alpha-1(VIII) chain precursor (Endothelial|
           collagen)
          Length = 744

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
 Frame = -3

Query: 343 RPCVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIP---------LPFLPGIQ 191
           +P VT  P P GPL +  +P  P     GPIG       P IP         +P  PG  
Sbjct: 273 KPGVTGFPGPQGPLGKPGAPGEPGPQ--GPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFP 330

Query: 190 GG 185
           GG
Sbjct: 331 GG 332

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>SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-related protein A)|
          Length = 1090

 Score = 26.2 bits (56), Expect(2) = 5.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 211 PFLPGIQGGPVAANAVPTQYNP 146
           P LP +  GPV    +PT  NP
Sbjct: 95  PVLPSLHSGPVPRMPLPTSQNP 116



 Score = 21.9 bits (45), Expect(2) = 5.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 149 PFPAKSFIPPSVIPPHIALYFSSLSSKLQLRH 54
           P P+ SF+P +  PP +   ++  S+  Q  H
Sbjct: 120 PMPSGSFLPGANPPPPLNWQYNYPSTGPQTNH 151

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>RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif protein 12)|
           (SH3/WW domain anchor protein in the nucleus) (SWAN)
          Length = 1002

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -3

Query: 325 LPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIPLPFLPG--IQGGPVAANAVPT 158
           +P P  P      P +P  A  GP    P    PAIP P +PG  I G  +    +P+
Sbjct: 717 MPGPAMPGPAMPGPAMPGPAMPGPAMPGPAIPGPAIPGPAIPGPAIPGPTIPGAGIPS 774



 Score = 29.6 bits (65), Expect = 5.9
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -3

Query: 325 LPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIPLPFLPG--IQGGPVAANAVP 161
           +P P  P      P +P  A  GP    P    PA+P P +PG  I G  +   A+P
Sbjct: 707 MPGPAMPGPAMPGPAMPGPAMPGPAMPGPAMPGPAMPGPAIPGPAIPGPAIPGPAIP 763



 Score = 29.6 bits (65), Expect = 5.9
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -3

Query: 325 LPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIPLPFLPG--IQGGPVAANAVP 161
           +P P  P      P +P  A  GP    P    PA+P P +PG  I G  +   A+P
Sbjct: 702 IPGPAMPGPAMPGPAMPGPAMPGPAMPGPAMPGPAMPGPAMPGPAIPGPAIPGPAIP 758



 Score = 29.3 bits (64), Expect = 7.7
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = -3

Query: 325 LPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIPLPFLPG--IQGGPVAANAVP 161
           +P P  P      P +P  A  GP    P    PAIP P +PG  I G  +    +P
Sbjct: 712 MPGPAMPGPAMPGPAMPGPAMPGPAMPGPAMPGPAIPGPAIPGPAIPGPAIPGPTIP 768

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>Y2507_BACFR (Q64TC3) Hypothetical transport protein BF2507|
          Length = 562

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 295 SLSPVIPNVAQIGPIGHRPFDLMPAIPLPFLPGIQGGPVAANAVPTQYNP 146
           +L P+   +A    +G  PF + P IP P   G+ GGP+  + + +++ P
Sbjct: 383 NLIPIFLGIALGCILGSIPF-MFPGIPQPVKLGLAGGPLIVSILISRFGP 431

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>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic|
           cytomatrix protein) (Brain-derived HLMN protein)
          Length = 5038

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = -3

Query: 364 QLYLNQPRP-CVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIPLPFLPGIQG 188
           +L   QP P    K+P PT   A+   P      Q GP    P   +PA P P       
Sbjct: 354 KLPAQQPGPQTAAKVPGPTKTPAQLSGPGKTPAQQPGPTKPSPQQPIPAKPQP------Q 407

Query: 187 GPVAANAVPTQYNPFQQNPLYRHPS 113
            PVA    P Q  P +  P  +HP+
Sbjct: 408 QPVATKPQPQQPAPAKPQP--QHPT 430

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>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic|
           cytomatrix protein)
          Length = 5085

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
 Frame = -3

Query: 349 QPRP-CVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIPLPFLPGIQGGPVAA 173
           QP P    K+P PT   A+   P      Q GP    P   +PA P P        PVA 
Sbjct: 360 QPGPQTAAKVPGPTKTPAQQSGPGKTPAQQPGPTKPSPQQPIPAKPQP------QQPVAT 413

Query: 172 NAVPTQYNPFQQNPLYRHPS 113
              P Q  P +  P    P+
Sbjct: 414 KTQPQQSAPAKPQPQQPAPA 433

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>GAG_WMSV (P03330) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30; Nucleoprotein p10]
          Length = 511

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 30/97 (30%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
 Frame = -3

Query: 361 LYLNQPRPCVTKLPTPTGPLA---------RSLSPVIPNVAQIGPIGHRPFDLMPAIPLP 209
           L L++P P    LP P  P A          S  P  P           P D        
Sbjct: 134 LLLSEPPPYPAALPPPLAPPAVGPAPGQAPDSSDPEGPAAGTRSRRARSPADDSGPDSTV 193

Query: 208 FLPGIQGGPVAA--NAVPTQYNPFQQNPLYRHPSFHP 104
            LP    GP A     VP QY PF    LY   S HP
Sbjct: 194 ILPLRAIGPPAEPNGLVPLQYWPFSSADLYNWKSNHP 230

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>IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2|
          Length = 959

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -3

Query: 346 PRPCVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIPLP 209
           P+P   K P    P A S     P+VAQ  P+  RP       P P
Sbjct: 95  PQPAPVKAPATKAPAAPSAPVTKPHVAQQRPVHQRPGGQQAQRPRP 140

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>IF2_BRUME (Q8YEB3) Translation initiation factor IF-2|
          Length = 959

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -3

Query: 346 PRPCVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIPLP 209
           P+P   K P    P A S     P+VAQ  P+  RP       P P
Sbjct: 95  PQPAPVKAPATKAPAAPSAPVTKPHVAQQRPVHQRPGGQQAQRPRP 140

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>IF2_BRUAB (Q57AA0) Translation initiation factor IF-2|
          Length = 959

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -3

Query: 346 PRPCVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIPLP 209
           P+P   K P    P A S     P+VAQ  P+  RP       P P
Sbjct: 95  PQPAPVKAPATKAPAAPSAPVTKPHVAQQRPVHQRPGGQQAQRPRP 140

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>IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2|
          Length = 959

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -3

Query: 346 PRPCVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIPLP 209
           P+P   K P    P A S     P+VAQ  P+  RP       P P
Sbjct: 95  PQPAPVKAPATKAPAAPSAPVTKPHVAQQRPVHQRPGGQQAQRPRP 140

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>LECC_PHYAM (Q9AYP9) Lectin-C precursor (PL-C)|
          Length = 194

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 201 GKNGRGIAGIRSNGR-CPMGPICATFGITG 287
           GK G  + G+R++GR CP G  C+ +G  G
Sbjct: 41  GKLGAPVCGVRASGRVCPDGYCCSQWGYCG 70

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>FINC_HUMAN (P02751) Fibronectin precursor (FN) (Cold-insoluble globulin) (CIG)|
          Length = 2386

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
 Frame = -3

Query: 385  QRKLEGKQLYLNQPRPCVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIPLPF 206
            Q+   G+Q+   +     T  PT   P+     P  PNV +   IGH P + +     P 
Sbjct: 2042 QQPSVGQQMIFEEHGFRRTTPPTTATPIRHRPRPYPPNVGEEIQIGHIPREDVDYHLYPH 2101

Query: 205  LPGI----QGGPVAANAVPTQYNPFQQNPLYRHPSFHPI 101
             PG+      G  A +     + PFQ    Y   S HP+
Sbjct: 2102 GPGLNPNASTGQEALSQTTISWAPFQDTSEY-IISCHPV 2139

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>SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related protein A)|
           (Fragment)
          Length = 1078

 Score = 25.8 bits (55), Expect(2) = 9.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 149 PFPAKSFIPPSVIPPHIALYFSSLSSKLQLRH 54
           P P+ SF+P + +PP +   ++  S+  Q  H
Sbjct: 105 PMPSSSFLPEANLPPPLNWQYNYPSTASQTNH 136



 Score = 21.6 bits (44), Expect(2) = 9.0
 Identities = 8/27 (29%), Positives = 10/27 (37%)
 Frame = -3

Query: 226 PAIPLPFLPGIQGGPVAANAVPTQYNP 146
           P    P  P +  GP     +P   NP
Sbjct: 75  PVASNPVTPSLHSGPAPRMPLPASQNP 101

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>WBP11_RAT (Q5PQQ2) WW domain-binding protein 11 (Wbp-11)|
          Length = 641

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
 Frame = -3

Query: 346 PRPCVTKLPTPTGPLARSLSPVIPNVAQ----------IGPIGHRPFDLMPAIPLPFLPG 197
           P P +   P P GP  R   P  P +            + P+G  P  L P  PLP  PG
Sbjct: 474 PPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPLP-NPG 532

Query: 196 IQGGP 182
           +   P
Sbjct: 533 VLSAP 537

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>WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11)|
          Length = 641

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
 Frame = -3

Query: 346 PRPCVTKLPTPTGPLARSLSPVIPNVAQ----------IGPIGHRPFDLMPAIPLPFLPG 197
           P P +   P P GP  R   P  P +            + P+G  P  L P  PLP  PG
Sbjct: 474 PPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPLP-NPG 532

Query: 196 IQGGP 182
           +   P
Sbjct: 533 VLSAP 537

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>WBP11_HUMAN (Q9Y2W2) WW domain-binding protein 11 (WBP-11) (SH3 domain-binding|
           protein SNP70) (Npw38-binding protein) (NpwBP)
          Length = 641

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
 Frame = -3

Query: 346 PRPCVTKLPTPTGPLARSLSPVIPNVAQ----------IGPIGHRPFDLMPAIPLPFLPG 197
           P P +   P P GP  R   P  P +            + P+G  P  L P  PLP  PG
Sbjct: 474 PPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPLP-NPG 532

Query: 196 IQGGP 182
           +   P
Sbjct: 533 VLSAP 537

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>CN032_BOVIN (Q5E9L3) Protein C14orf32 homolog|
          Length = 240

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
 Frame = -3

Query: 340 PCVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIP-LPFLPGIQGGPVAANAV 164
           P  T  P P GP    + P +P     GP    P    P+ P  P   G   GP      
Sbjct: 55  PSATPSPVPFGPTPTGMYPSVP---PTGPPPGPPAPFPPSGPSCPPPGGPYPGPGPTGPY 111

Query: 163 PTQYNPFQQNP 131
           PT   PF + P
Sbjct: 112 PTPNMPFPELP 122

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>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1) (Fragment)
          Length = 467

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
 Frame = -3

Query: 346 PRPCVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRPF--DLMPAIPLPFLPGIQGGPVAA 173
           P P    +P+P G ++ S SP  P      P G+ P      P  P          P + 
Sbjct: 72  PGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 131

Query: 172 NAVPT--QYNPFQQNPLYRHPSFHP 104
           N  PT   Y+P   +     PS+ P
Sbjct: 132 NYSPTSPSYSPTSPSYSPTSPSYSP 156

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>R3HD1_HUMAN (Q15032) R3H domain-containing protein 1|
          Length = 1099

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = -3

Query: 340  PCVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIPLPFLPGIQGGPVAANAVP 161
            P ++   +P      +L  V P+    GP    P  +MP    PF+PG           P
Sbjct: 885  PIISPAQSPAPAQLSTLKTVRPS----GP----PLSIMPQFSRPFVPGQGDSRYPLLGQP 936

Query: 160  TQYNP 146
             QYNP
Sbjct: 937  LQYNP 941

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>GAG17_DROME (P04282) Retrovirus-related Gag polyprotein from copia-like|
           transposable element 17.6
          Length = 439

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -3

Query: 217 PLPFLPGIQGGPVAANAVPTQYNPFQQNPLYRHP-SFHP 104
           P PFL      P+   A      P   NPLYRHP  +HP
Sbjct: 229 PTPFLH--YNSPIPYQAPQIYQTPPTNNPLYRHPIPYHP 265

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>GAG_FSVGA (P03337) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30]
          Length = 425

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
 Frame = -3

Query: 322 PTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIPL-----PFLPGIQGGPVAANAVPT 158
           P P+ PL  SL PV+P      P    P    P I L     P  PG  G P +    PT
Sbjct: 193 PQPSAPLTSSLYPVLPKSDPPKPPVLPPDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPT 252

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>YM38_YEAST (Q03825) Hypothetical 85.0 kDa protein in HLJ1-SMP2 intergenic|
           region
          Length = 758

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 214 LPFLPGIQGGPVAANAVPTQYNPFQQNPL 128
           +P  PG  G PV  N    Q NP  QNP+
Sbjct: 529 MPLQPGNMGSPVIENPGMRQTNPSGQNPM 557

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>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100|
          Length = 1038

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = -3

Query: 349 QPRPCVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRPFDLMPAIPLPFLPGIQGGPVAAN 170
           QP P V+++P    P   S S   P+ A  GP G  PF   P+ P P       GP    
Sbjct: 76  QPSPFVSQIPGSRPPPPSSNS--FPSPAY-GPPGGAPFQRFPSPPFPTTQNPPQGPPPPQ 132

Query: 169 AVPTQYNP 146
            +    +P
Sbjct: 133 TLAGHLSP 140

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>DYN3_HUMAN (Q9UQ16) Dynamin-3 (EC 3.6.5.5) (Dynamin, testicular) (T-dynamin)|
          Length = 859

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
 Frame = -3

Query: 346 PRPCVTKLPTPTGPLARSLS-----PVIPNVAQIGPIGHRPFDLMPAIPLPFLPGIQGGP 182
           P P   + PT + PLAR  S     P IP+          PF   P  P P      G P
Sbjct: 762 PSPTTQRRPTLSAPLARPTSGRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPSSSDSFGAP 821

Query: 181 VAANAVPTQYNP 146
               + PT+  P
Sbjct: 822 PQVPSRPTRAPP 833

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>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
 Frame = -3

Query: 346  PRPCVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRPF--DLMPAIPLPFLPGIQGGPVAA 173
            P P    +P+P G ++ S SP  P      P G+ P      P  P          P + 
Sbjct: 1575 PGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1634

Query: 172  NAVPT--QYNPFQQNPLYRHPSFHP 104
            N  PT   Y+P   +     PS+ P
Sbjct: 1635 NYSPTSPSYSPTSPSYSPTSPSYSP 1659

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>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
 Frame = -3

Query: 346  PRPCVTKLPTPTGPLARSLSPVIPNVAQIGPIGHRPF--DLMPAIPLPFLPGIQGGPVAA 173
            P P    +P+P G ++ S SP  P      P G+ P      P  P          P + 
Sbjct: 1575 PGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSP 1634

Query: 172  NAVPT--QYNPFQQNPLYRHPSFHP 104
            N  PT   Y+P   +     PS+ P
Sbjct: 1635 NYSPTSPSYSPTSPSYSPTSPSYSP 1659


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,238,214
Number of Sequences: 219361
Number of extensions: 1453634
Number of successful extensions: 4572
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 4268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4534
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result