ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20j15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473075.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1746 Score = 214 bits (108), Expect = 3e-52 Identities = 297/360 (82%) Strand = Plus / Minus Query: 259 ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 318 ||||| ||||| |||| ||| |||||||||| ||| || ||||||||||| || || Sbjct: 1721 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 1662 Query: 319 agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 378 || |||| || | ||||||||| || ||| ||||||||||||| || | ||||||||| Sbjct: 1661 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 1602 Query: 379 cgagagtacgacaggttcagcgagaccaaagacgtcaggcccgagattatctccaaggtc 438 ||||||| ||||| |||||| |||||||| | || |||| || || | ||| |||| Sbjct: 1601 cgagagttcgacacgttcagggagaccaaggcagtgaggcgggaaatcagctctaaggat 1542 Query: 439 ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 498 ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| ||| Sbjct: 1541 ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 1482 Query: 499 atgttcttcactccagcgtcggtgattaacccgccgcaggcctccagagactgcagaccc 558 || |||||||||||||| || || |||||||| |||||| |||| || ||||| ||| | Sbjct: 1481 atattcttcactccagcatctgtaattaacccaccgcagacctcaagggactgtagattc 1422 Query: 559 ttgaaacatctgaagcagcttgtcccagcatcagttatacgagctccaaaaagatcaagg 618 |||||| || | |||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1421 ttgaaatatttcaagcagtttgtcccagcatcagttatacgagctccaaatagatcaagg 1362
>dbj|AK105091.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-F06, full insert sequence Length = 1431 Score = 214 bits (108), Expect = 3e-52 Identities = 297/360 (82%) Strand = Plus / Minus Query: 259 ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 318 ||||| ||||| |||| ||| |||||||||| ||| || ||||||||||| || || Sbjct: 1097 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 1038 Query: 319 agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 378 || |||| || | ||||||||| || ||| ||||||||||||| || | ||||||||| Sbjct: 1037 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 978 Query: 379 cgagagtacgacaggttcagcgagaccaaagacgtcaggcccgagattatctccaaggtc 438 ||||||| ||||| |||||| |||||||| | || |||| || || | ||| |||| Sbjct: 977 cgagagttcgacacgttcagggagaccaaggcagtgaggcgggaaatcagctctaaggat 918 Query: 439 ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 498 ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| ||| Sbjct: 917 ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 858 Query: 499 atgttcttcactccagcgtcggtgattaacccgccgcaggcctccagagactgcagaccc 558 || |||||||||||||| || || |||||||| |||||| |||| || ||||| ||| | Sbjct: 857 atattcttcactccagcatctgtaattaacccaccgcagacctcaagggactgtagattc 798 Query: 559 ttgaaacatctgaagcagcttgtcccagcatcagttatacgagctccaaaaagatcaagg 618 |||||| || | |||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct: 797 ttgaaatatttcaagcagtttgtcccagcatcagttatacgagctccaaatagatcaagg 738 Score = 48.1 bits (24), Expect = 0.036 Identities = 42/48 (87%) Strand = Plus / Minus Query: 16 aaatgcggaggaagcacgacgcatttacagttgtttcttcgcatcagc 63 |||||| ||||||||||| | ||||||||||||| |||| ||||||| Sbjct: 1378 aaatgcagaggaagcacgccatatttacagttgttccttcccatcagc 1331
>dbj|AK099404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H05, full insert sequence Length = 2375 Score = 214 bits (108), Expect = 3e-52 Identities = 297/360 (82%) Strand = Plus / Minus Query: 259 ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 318 ||||| ||||| |||| ||| |||||||||| ||| || ||||||||||| || || Sbjct: 2032 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 1973 Query: 319 agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 378 || |||| || | ||||||||| || ||| ||||||||||||| || | ||||||||| Sbjct: 1972 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 1913 Query: 379 cgagagtacgacaggttcagcgagaccaaagacgtcaggcccgagattatctccaaggtc 438 ||||||| ||||| |||||| |||||||| | || |||| || || | ||| |||| Sbjct: 1912 cgagagttcgacacgttcagggagaccaaggcagtgaggcgggaaatcagctctaaggat 1853 Query: 439 ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 498 ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| ||| Sbjct: 1852 ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 1793 Query: 499 atgttcttcactccagcgtcggtgattaacccgccgcaggcctccagagactgcagaccc 558 || |||||||||||||| || || |||||||| |||||| |||| || ||||| ||| | Sbjct: 1792 atattcttcactccagcatctgtaattaacccaccgcagacctcaagggactgtagattc 1733 Query: 559 ttgaaacatctgaagcagcttgtcccagcatcagttatacgagctccaaaaagatcaagg 618 |||||| || | |||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1732 ttgaaatatttcaagcagtttgtcccagcatcagttatacgagctccaaatagatcaagg 1673 Score = 48.1 bits (24), Expect = 0.036 Identities = 42/48 (87%) Strand = Plus / Minus Query: 16 aaatgcggaggaagcacgacgcatttacagttgtttcttcgcatcagc 63 |||||| ||||||||||| | ||||||||||||| |||| ||||||| Sbjct: 2313 aaatgcagaggaagcacgccatatttacagttgttccttcccatcagc 2266
>dbj|AK101695.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060B12, full insert sequence Length = 2265 Score = 206 bits (104), Expect = 7e-50 Identities = 296/360 (82%) Strand = Plus / Minus Query: 259 ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 318 ||||| ||||| |||| ||| |||||||||| ||| || ||||||||||| || || Sbjct: 1926 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 1867 Query: 319 agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 378 || |||| || | ||||||||| || ||| ||||||||||||| || | ||||||||| Sbjct: 1866 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 1807 Query: 379 cgagagtacgacaggttcagcgagaccaaagacgtcaggcccgagattatctccaaggtc 438 ||||||| ||||| |||||| |||||||| | || |||| || || | ||| || | Sbjct: 1806 cgagagttcgacacgttcagggagaccaaggcagtgaggcgggaaatcagctctaatgat 1747 Query: 439 ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 498 ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| ||| Sbjct: 1746 ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 1687 Query: 499 atgttcttcactccagcgtcggtgattaacccgccgcaggcctccagagactgcagaccc 558 || |||||||||||||| || || |||||||| |||||| |||| || ||||| ||| | Sbjct: 1686 atattcttcactccagcatctgtaattaacccaccgcagacctcaagggactgtagattc 1627 Query: 559 ttgaaacatctgaagcagcttgtcccagcatcagttatacgagctccaaaaagatcaagg 618 |||||| || | |||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1626 ttgaaatatttcaagcagtttgtcccagcatcagttatacgagctccaaatagatcaagg 1567 Score = 48.1 bits (24), Expect = 0.036 Identities = 42/48 (87%) Strand = Plus / Minus Query: 16 aaatgcggaggaagcacgacgcatttacagttgtttcttcgcatcagc 63 |||||| ||||||||||| | ||||||||||||| |||| ||||||| Sbjct: 2207 aaatgcagaggaagcacgccatatttacagttgttccttcccatcagc 2160
>gb|AY103901.1| Zea mays PCO142939 mRNA sequence Length = 1490 Score = 200 bits (101), Expect = 4e-48 Identities = 290/353 (82%) Strand = Plus / Minus Query: 256 aggttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgag 315 ||||||||||||||| ||||| | ||||| | | ||||| ||||||||| |||| || Sbjct: 1343 aggttggggagggcgaccagccggagcttatccatctcgcttgccgtcaccctgcaggac 1284 Query: 316 tcgagcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgac 375 || || || || |||||||||||||||||||| |||| ||||||||||| | ||| || Sbjct: 1283 tccagggatagggagcgcaggttctgcagcggtttcaggtggtggaggcccgagttggag 1224 Query: 376 acccgagagtacgacaggttcagcgagaccaaagacgtcaggcccgagattatctccaag 435 ||||| |||| |||| ||||| ||| || | | |||||||| ||||| | ||||| | Sbjct: 1223 acccgggagttggacacgttcaacgacactagcgcagtcaggccggagatcagctccagg 1164 Query: 436 gtcttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtcc 495 || ||||| ||||| ||||||||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 1163 gttttgtccgtgagcttgccgttttgagataggttgagcaacgtcagagctttcaggtcc 1104 Query: 496 ttgatgttcttcactccagcgtcggtgattaacccgccgcaggcctccagagactgcaga 555 |||||||||||||| ||||| || || || ||||| |||||| ||||||| ||||| | | Sbjct: 1103 ttgatgttcttcacgccagcatccgtaatcaacccaccgcagacctccagggactgaata 1044 Query: 556 cccttgaaacatctgaagcagcttgtcccagcatcagttatacgagctccaaa 608 ||||||| ||||||||||||| | |||| ||||||||| ||||||||||| Sbjct: 1043 ttcttgaaaaatctgaagcagctcatgccagaatcagttatgcgagctccaaa 991
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 107 bits (54), Expect = 4e-20 Identities = 108/126 (85%) Strand = Plus / Plus Query: 439 ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 498 ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| ||| Sbjct: 25102591 ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 25102650 Query: 499 atgttcttcactccagcgtcggtgattaacccgccgcaggcctccagagactgcagaccc 558 || |||||||||||||| || || |||||||| |||||| |||| || ||||| ||| | Sbjct: 25102651 atattcttcactccagcatctgtaattaacccaccgcagacctcaagggactgtagattc 25102710 Query: 559 ttgaaa 564 |||||| Sbjct: 25102711 ttgaaa 25102716 Score = 79.8 bits (40), Expect = 1e-11 Identities = 46/48 (95%) Strand = Plus / Plus Query: 571 aagcagcttgtcccagcatcagttatacgagctccaaaaagatcaagg 618 |||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct: 25103084 aagcagtttgtcccagcatcagttatacgagctccaaatagatcaagg 25103131 Score = 73.8 bits (37), Expect = 6e-10 Identities = 121/149 (81%) Strand = Plus / Plus Query: 259 ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 318 ||||| ||||| |||| ||| |||||||||| ||| || ||||||||||| || || Sbjct: 25102330 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 25102389 Query: 319 agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 378 || |||| || | ||||||||| || ||| ||||||||||||| || | ||||||||| Sbjct: 25102390 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 25102449 Query: 379 cgagagtacgacaggttcagcgagaccaa 407 ||||||| ||||| |||||| |||||||| Sbjct: 25102450 cgagagttcgacacgttcagggagaccaa 25102478 Score = 48.1 bits (24), Expect = 0.036 Identities = 42/48 (87%) Strand = Plus / Plus Query: 16 aaatgcggaggaagcacgacgcatttacagttgtttcttcgcatcagc 63 |||||| ||||||||||| | ||||||||||||| |||| ||||||| Sbjct: 25102049 aaatgcagaggaagcacgccatatttacagttgttccttcccatcagc 25102096
>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14, complete sequence Length = 150187 Score = 107 bits (54), Expect = 4e-20 Identities = 108/126 (85%) Strand = Plus / Plus Query: 439 ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 498 ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| ||| Sbjct: 50018 ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 50077 Query: 499 atgttcttcactccagcgtcggtgattaacccgccgcaggcctccagagactgcagaccc 558 || |||||||||||||| || || |||||||| |||||| |||| || ||||| ||| | Sbjct: 50078 atattcttcactccagcatctgtaattaacccaccgcagacctcaagggactgtagattc 50137 Query: 559 ttgaaa 564 |||||| Sbjct: 50138 ttgaaa 50143 Score = 79.8 bits (40), Expect = 1e-11 Identities = 46/48 (95%) Strand = Plus / Plus Query: 571 aagcagcttgtcccagcatcagttatacgagctccaaaaagatcaagg 618 |||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct: 50511 aagcagtttgtcccagcatcagttatacgagctccaaatagatcaagg 50558 Score = 73.8 bits (37), Expect = 6e-10 Identities = 121/149 (81%) Strand = Plus / Plus Query: 259 ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 318 ||||| ||||| |||| ||| |||||||||| ||| || ||||||||||| || || Sbjct: 49757 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 49816 Query: 319 agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 378 || |||| || | ||||||||| || ||| ||||||||||||| || | ||||||||| Sbjct: 49817 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 49876 Query: 379 cgagagtacgacaggttcagcgagaccaa 407 ||||||| ||||| |||||| |||||||| Sbjct: 49877 cgagagttcgacacgttcagggagaccaa 49905 Score = 48.1 bits (24), Expect = 0.036 Identities = 42/48 (87%) Strand = Plus / Plus Query: 16 aaatgcggaggaagcacgacgcatttacagttgtttcttcgcatcagc 63 |||||| ||||||||||| | ||||||||||||| |||| ||||||| Sbjct: 49476 aaatgcagaggaagcacgccatatttacagttgttccttcccatcagc 49523
>ref|XM_507496.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1004_A05.39 mRNA Length = 2521 Score = 79.8 bits (40), Expect = 1e-11 Identities = 271/348 (77%) Strand = Plus / Minus Query: 234 ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 293 |||||| || || ||||||| |||||||||||| | | | ||| |||||||| ||||| Sbjct: 2123 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 2064 Query: 294 gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcagcggcctcag 353 | | ||| ||| |||| || || |||||||||||||||||||||||||| | |||| Sbjct: 2063 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcagatccttcag 2004 Query: 354 atggtggaggcctgcgttcgacacccgagagtacgacaggttcagcgagaccaaagacgt 413 ||| ||||||| || || || || |||| || || | |||||||||||| |||| || Sbjct: 2003 gtggcggaggccggcattggatacacgagtgttggagacgttcagcgagactaaagcagt 1944 Query: 414 caggcccgagattatctccaaggtcttgtctgtgaggttgccgttttgggataggttcag 473 | ||| || || | ||||| ||| |||||||| ||||| |||| || || || || || Sbjct: 1943 taagccagaaatcagctccagggttttgtctgtcaggttaacgttctgagaaagattgag 1884 Query: 474 caacgtcagggctttgaggtccttgatgttcttcactccagcgtcggtgattaacccgcc 533 | |||| |||||||| |||||||| |||||||||||||| || || |||||||| || Sbjct: 1883 ttgcttcagagctttgagatccttgatattcttcactccagcatcagtaattaacccacc 1824 Query: 534 gcaggcctccagagactgcagacccttgaaacatctgaagcagcttgt 581 |||| | || ||||| | ||| ||| ||| |||||||||||||||| Sbjct: 1823 gcagacttcaagagattcaagattcttaaaaaatctgaagcagcttgt 1776
>ref|XM_506866.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1004_A05.39 mRNA Length = 2538 Score = 79.8 bits (40), Expect = 1e-11 Identities = 271/348 (77%) Strand = Plus / Minus Query: 234 ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 293 |||||| || || ||||||| |||||||||||| | | | ||| |||||||| ||||| Sbjct: 2080 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 2021 Query: 294 gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcagcggcctcag 353 | | ||| ||| |||| || || |||||||||||||||||||||||||| | |||| Sbjct: 2020 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcagatccttcag 1961 Query: 354 atggtggaggcctgcgttcgacacccgagagtacgacaggttcagcgagaccaaagacgt 413 ||| ||||||| || || || || |||| || || | |||||||||||| |||| || Sbjct: 1960 gtggcggaggccggcattggatacacgagtgttggagacgttcagcgagactaaagcagt 1901 Query: 414 caggcccgagattatctccaaggtcttgtctgtgaggttgccgttttgggataggttcag 473 | ||| || || | ||||| ||| |||||||| ||||| |||| || || || || || Sbjct: 1900 taagccagaaatcagctccagggttttgtctgtcaggttaacgttctgagaaagattgag 1841 Query: 474 caacgtcagggctttgaggtccttgatgttcttcactccagcgtcggtgattaacccgcc 533 | |||| |||||||| |||||||| |||||||||||||| || || |||||||| || Sbjct: 1840 ttgcttcagagctttgagatccttgatattcttcactccagcatcagtaattaacccacc 1781 Query: 534 gcaggcctccagagactgcagacccttgaaacatctgaagcagcttgt 581 |||| | || ||||| | ||| ||| ||| |||||||||||||||| Sbjct: 1780 gcagacttcaagagattcaagattcttaaaaaatctgaagcagcttgt 1733
>ref|XM_466700.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2507 Score = 79.8 bits (40), Expect = 1e-11 Identities = 271/348 (77%) Strand = Plus / Minus Query: 234 ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 293 |||||| || || ||||||| |||||||||||| | | | ||| |||||||| ||||| Sbjct: 2029 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 1970 Query: 294 gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcagcggcctcag 353 | | ||| ||| |||| || || |||||||||||||||||||||||||| | |||| Sbjct: 1969 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcagatccttcag 1910 Query: 354 atggtggaggcctgcgttcgacacccgagagtacgacaggttcagcgagaccaaagacgt 413 ||| ||||||| || || || || |||| || || | |||||||||||| |||| || Sbjct: 1909 gtggcggaggccggcattggatacacgagtgttggagacgttcagcgagactaaagcagt 1850 Query: 414 caggcccgagattatctccaaggtcttgtctgtgaggttgccgttttgggataggttcag 473 | ||| || || | ||||| ||| |||||||| ||||| |||| || || || || || Sbjct: 1849 taagccagaaatcagctccagggttttgtctgtcaggttaacgttctgagaaagattgag 1790 Query: 474 caacgtcagggctttgaggtccttgatgttcttcactccagcgtcggtgattaacccgcc 533 | |||| |||||||| |||||||| |||||||||||||| || || |||||||| || Sbjct: 1789 ttgcttcagagctttgagatccttgatattcttcactccagcatcagtaattaacccacc 1730 Query: 534 gcaggcctccagagactgcagacccttgaaacatctgaagcagcttgt 581 |||| | || ||||| | ||| ||| ||| |||||||||||||||| Sbjct: 1729 gcagacttcaagagattcaagattcttaaaaaatctgaagcagcttgt 1682
>dbj|AK098974.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091J20, full insert sequence Length = 2522 Score = 79.8 bits (40), Expect = 1e-11 Identities = 271/348 (77%) Strand = Plus / Minus Query: 234 ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 293 |||||| || || ||||||| |||||||||||| | | | ||| |||||||| ||||| Sbjct: 2123 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 2064 Query: 294 gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcagcggcctcag 353 | | ||| ||| |||| || || |||||||||||||||||||||||||| | |||| Sbjct: 2063 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcagatccttcag 2004 Query: 354 atggtggaggcctgcgttcgacacccgagagtacgacaggttcagcgagaccaaagacgt 413 ||| ||||||| || || || || |||| || || | |||||||||||| |||| || Sbjct: 2003 gtggcggaggccggcattggatacacgagtgttggagacgttcagcgagactaaagcagt 1944 Query: 414 caggcccgagattatctccaaggtcttgtctgtgaggttgccgttttgggataggttcag 473 | ||| || || | ||||| ||| |||||||| ||||| |||| || || || || || Sbjct: 1943 taagccagaaatcagctccagggttttgtctgtcaggttaacgttctgagaaagattgag 1884 Query: 474 caacgtcagggctttgaggtccttgatgttcttcactccagcgtcggtgattaacccgcc 533 | |||| |||||||| |||||||| |||||||||||||| || || |||||||| || Sbjct: 1883 ttgcttcagagctttgagatccttgatattcttcactccagcatcagtaattaacccacc 1824 Query: 534 gcaggcctccagagactgcagacccttgaaacatctgaagcagcttgt 581 |||| | || ||||| | ||| ||| ||| |||||||||||||||| Sbjct: 1823 gcagacttcaagagattcaagattcttaaaaaatctgaagcagcttgt 1776
>dbj|AK098853.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H15, full insert sequence Length = 2538 Score = 79.8 bits (40), Expect = 1e-11 Identities = 271/348 (77%) Strand = Plus / Minus Query: 234 ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 293 |||||| || || ||||||| |||||||||||| | | | ||| |||||||| ||||| Sbjct: 2080 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 2021 Query: 294 gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcagcggcctcag 353 | | ||| ||| |||| || || |||||||||||||||||||||||||| | |||| Sbjct: 2020 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcagatccttcag 1961 Query: 354 atggtggaggcctgcgttcgacacccgagagtacgacaggttcagcgagaccaaagacgt 413 ||| ||||||| || || || || |||| || || | |||||||||||| |||| || Sbjct: 1960 gtggcggaggccggcattggatacacgagtgttggagacgttcagcgagactaaagcagt 1901 Query: 414 caggcccgagattatctccaaggtcttgtctgtgaggttgccgttttgggataggttcag 473 | ||| || || | ||||| ||| |||||||| ||||| |||| || || || || || Sbjct: 1900 taagccagaaatcagctccagggttttgtctgtcaggttaacgttctgagaaagattgag 1841 Query: 474 caacgtcagggctttgaggtccttgatgttcttcactccagcgtcggtgattaacccgcc 533 | |||| |||||||| |||||||| |||||||||||||| || || |||||||| || Sbjct: 1840 ttgcttcagagctttgagatccttgatattcttcactccagcatcagtaattaacccacc 1781 Query: 534 gcaggcctccagagactgcagacccttgaaacatctgaagcagcttgt 581 |||| | || ||||| | ||| ||| ||| |||||||||||||||| Sbjct: 1780 gcagacttcaagagattcaagattcttaaaaaatctgaagcagcttgt 1733
>dbj|AK065051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I18, full insert sequence Length = 2507 Score = 79.8 bits (40), Expect = 1e-11 Identities = 271/348 (77%) Strand = Plus / Minus Query: 234 ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 293 |||||| || || ||||||| |||||||||||| | | | ||| |||||||| ||||| Sbjct: 2029 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 1970 Query: 294 gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcagcggcctcag 353 | | ||| ||| |||| || || |||||||||||||||||||||||||| | |||| Sbjct: 1969 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcagatccttcag 1910 Query: 354 atggtggaggcctgcgttcgacacccgagagtacgacaggttcagcgagaccaaagacgt 413 ||| ||||||| || || || || |||| || || | |||||||||||| |||| || Sbjct: 1909 gtggcggaggccggcattggatacacgagtgttggagacgttcagcgagactaaagcagt 1850 Query: 414 caggcccgagattatctccaaggtcttgtctgtgaggttgccgttttgggataggttcag 473 | ||| || || | ||||| ||| |||||||| ||||| |||| || || || || || Sbjct: 1849 taagccagaaatcagctccagggttttgtctgtcaggttaacgttctgagaaagattgag 1790 Query: 474 caacgtcagggctttgaggtccttgatgttcttcactccagcgtcggtgattaacccgcc 533 | |||| |||||||| |||||||| |||||||||||||| || || |||||||| || Sbjct: 1789 ttgcttcagagctttgagatccttgatattcttcactccagcatcagtaattaacccacc 1730 Query: 534 gcaggcctccagagactgcagacccttgaaacatctgaagcagcttgt 581 |||| | || ||||| | ||| ||| ||| |||||||||||||||| Sbjct: 1729 gcagacttcaagagattcaagattcttaaaaaatctgaagcagcttgt 1682
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 479 tcagggctttgaggtccttgatgttcttcactccagcgtcggtgattaacccgccgcag 537 |||| |||||||| |||||||| |||||||||||||| || || |||||||| |||||| Sbjct: 24187064 tcagagctttgagatccttgatattcttcactccagcatcagtaattaacccaccgcag 24187122 Score = 54.0 bits (27), Expect = 6e-04 Identities = 90/111 (81%) Strand = Plus / Plus Query: 234 ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 293 |||||| || || ||||||| |||||||||||| | | | ||| |||||||| ||||| Sbjct: 24186714 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 24186773 Query: 294 gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 344 | | ||| ||| |||| || || |||||||||||||||||||||||||| Sbjct: 24186774 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 24186824
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A05 Length = 174290 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 479 tcagggctttgaggtccttgatgttcttcactccagcgtcggtgattaacccgccgcag 537 |||| |||||||| |||||||| |||||||||||||| || || |||||||| |||||| Sbjct: 145805 tcagagctttgagatccttgatattcttcactccagcatcagtaattaacccaccgcag 145863 Score = 54.0 bits (27), Expect = 6e-04 Identities = 90/111 (81%) Strand = Plus / Plus Query: 234 ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 293 |||||| || || ||||||| |||||||||||| | | | ||| |||||||| ||||| Sbjct: 145455 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 145514 Query: 294 gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 344 | | ||| ||| |||| || || |||||||||||||||||||||||||| Sbjct: 145515 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 145565
>emb|AL158841.6| Human DNA sequence from clone RP11-183M13 on chromosome 1 Contains part of the PTGFR gene for prostaglandin F receptor (FP) and part of a novel gene, complete sequence Length = 167721 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 549 ctgcagacccttgaaacatct 569 ||||||||||||||||||||| Sbjct: 118470 ctgcagacccttgaaacatct 118490
>gb|AC005230.1|AC005230 Homo sapiens PAC clone RP5-1163L11 from 14q24.3, complete sequence Length = 112902 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 547 gactgcagacccttgaaacatctga 571 |||||||||||||| |||||||||| Sbjct: 54395 gactgcagacccttcaaacatctga 54419
>ref|NM_189191.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3582 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 tgcagcggcctcagatggtg 359 |||||||||||||||||||| Sbjct: 1671 tgcagcggcctcagatggtg 1652
>gb|AF506028.1| Poncirus trifoliata citrus tristeza virus resistance gene locus, complete sequence Length = 282699 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 595 atacgagctccaaaaagatc 614 |||||||||||||||||||| Sbjct: 2897 atacgagctccaaaaagatc 2878
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gtcgagcgacagcgagcgca 334 |||||||||||||||||||| Sbjct: 1736506 gtcgagcgacagcgagcgca 1736525
>ref|XM_389165.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG08989.1) partial mRNA Length = 5706 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 559 ttgaaacatctgaagcagcttgtc 582 ||||| |||||||||||||||||| Sbjct: 5157 ttgaaccatctgaagcagcttgtc 5134
>ref|XM_538255.2| PREDICTED: Canis familiaris similar to Elongation factor Ts, mitochondrial precursor (EF-Ts) (EF-TsMt) (LOC481134), mRNA Length = 1495 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 528 cccgccgcaggcctccagag 547 |||||||||||||||||||| Sbjct: 540 cccgccgcaggcctccagag 521
>ref|XM_777900.1| PREDICTED: Strongylocentrotus purpuratus similar to dentin sialophosphoprotein preproprotein (LOC577686), mRNA Length = 3507 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 accggaagactactccggac 244 |||||||||||||||||||| Sbjct: 3236 accggaagactactccggac 3255
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gtcgagcgacagcgagcgca 334 |||||||||||||||||||| Sbjct: 3071383 gtcgagcgacagcgagcgca 3071402
>gb|AC107403.6| Drosophila melanogaster X BAC RP98-21M21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181831 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 gcccgagattatctccaagg 436 |||||||||||||||||||| Sbjct: 52419 gcccgagattatctccaagg 52400
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 tcagtctatcatcagatcaa 120 |||||||||||||||||||| Sbjct: 2288964 tcagtctatcatcagatcaa 2288983
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gtcgagcgacagcgagcgca 334 |||||||||||||||||||| Sbjct: 2220100 gtcgagcgacagcgagcgca 2220119
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 tgcagcggcctcagatggtg 359 |||||||||||||||||||| Sbjct: 11028293 tgcagcggcctcagatggtg 11028312
>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0682B08 Length = 138376 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 tgcagcggcctcagatggtg 359 |||||||||||||||||||| Sbjct: 57175 tgcagcggcctcagatggtg 57194
>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487H02 Length = 145491 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 tgcagcggcctcagatggtg 359 |||||||||||||||||||| Sbjct: 131135 tgcagcggcctcagatggtg 131154
>gb|AC007461.8|AC007461 Homo sapiens chromosome 17, clone 84_E_24, complete sequence Length = 180385 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 536 aggcctccagagactgcaga 555 |||||||||||||||||||| Sbjct: 77910 aggcctccagagactgcaga 77891
>gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 of 74 of the complete sequence Length = 326403 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 gcccgagattatctccaagg 436 |||||||||||||||||||| Sbjct: 212973 gcccgagattatctccaagg 212954
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gtcgagcgacagcgagcgca 334 |||||||||||||||||||| Sbjct: 2838928 gtcgagcgacagcgagcgca 2838947 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,009,909 Number of Sequences: 3902068 Number of extensions: 4009909 Number of successful extensions: 68190 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67890 Number of HSP's gapped (non-prelim): 292 length of query: 639 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 616 effective length of database: 17,143,297,704 effective search space: 10560271385664 effective search space used: 10560271385664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
