>NOT1_YEAST (P25655) General negative regulator of transcription subunit 1|
          Length = 2108

 Score = 82.4 bits (202), Expect = 9e-16
 Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
 Frame = -3

Query: 512  LVTNLDTEGRYLFLNAIANQLRYPNSHTHYFSFIILYLFAEATQE----HIQEQVTRVLL 345
            L+ N   E +Y  + +I  QLRYPN HT++FSF+++ +F           +QE + R  L
Sbjct: 1972 LIQNGSIEMKYQIILSIVEQLRYPNIHTYWFSFVLMNMFKSDEWNDQKLEVQEIILRNFL 2031

Query: 344  ERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFTHCAPEIKQLFESVAK 198
            +R+IVN+PH WG+ + F +LI N   N  +  F    PEIK + + + K
Sbjct: 2032 KRIIVNKPHTWGVSVFFTQLINNNDINLLDLPFVQSVPEIKLILQQLVK 2080

>SYC_METAC (Q8TSP6) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 473

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
 Frame = -3

Query: 575 QINHSTMDIFQIEXATEIFKYLVTNLDTEGRYLFLNAIANQLRYPNSHTHYFSFI-ILYL 399
           Q  H+  D F    A  +F+ L    +     L+L A  N+      HT Y  F  +L L
Sbjct: 358 QFRHALEDDFNTPRALTVFRELSRTAN-----LYLEAGKNRKVLEKVHTLYRKFSDVLGL 412

Query: 398 FAEATQEHIQEQVTRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFTHCAPEIKQ 219
           FA+A +E I E+V R++ ER    +   WG   T  E I+   Y   ++      P +K+
Sbjct: 413 FAQAGKEEIPEEVFRLVEEREAARKKKDWGTSDTLREKIRTLGYIIQDKKE---GPNVKK 469

Query: 218 LFES 207
             ES
Sbjct: 470 AEES 473

>FSHP1_RAT (Q63517) Follicle-stimulating hormone primary response protein (FSH|
           primary response protein 1) (Leucine-rich primary
           response protein 1)
          Length = 745

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +2

Query: 50  YKTNLPASQTAHRPIRQAMTGSNYLQETRCISGRHQSHHPLLFQRLHRMTLPPTQTAV 223
           Y + +PA  +A +  R+ M+  +YL   R +        P L + +H + LP   ++V
Sbjct: 303 YHSVIPAVNSAKKECREKMSLFDYLSNDRSLPVEQLQSFPQLLENIHCLELPSQMSSV 360

>MRP7_ARATH (Q9LK62) Multidrug resistance-associated protein 7 (EC 3.6.3.44)|
            (Glutathione S-conjugate transporting ATPase 7)
            (ATP-energized glutathione S-conjugate pump 7)
          Length = 1493

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
 Frame = -1

Query: 277  TRATTFGTDPS-HTARLRLNSCLSRWQSHAVEPLEKQWMM----ALMAATNASSFL*IVA 113
            T   +F  +P   T  +RLN C SR + HA+  +E  W+      L     A S + +V+
Sbjct: 1110 TTIRSFDQEPRFRTDIMRLNDCYSRLRFHAISAME--WLCFRLDLLSTVAFALSLVILVS 1167

Query: 112  ACHGLSNGTMSGLT---CWQICFVS*YCNWILCD 20
               G+ N + +GL       +  +     W LCD
Sbjct: 1168 VPEGVINPSFAGLAVTYALNLNSLQATLIWTLCD 1201

>DOCK9_MOUSE (Q8BIK4) Dedicator of cytokinesis protein 9 (Cdc42 guanine nucleotide|
            exchange factor zizimin 1)
          Length = 2055

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
 Frame = -3

Query: 530  TEIFKYLVTNLDTEGRYL--FLNAIANQLRYPNSHTHYFSFIILYLFAEATQEHIQEQVT 357
            +E+ KYL +    EG  +  FL  I NQL                +   ATQE +   VT
Sbjct: 856  SELVKYLKSLHAMEGHVMIAFLPTILNQL--------------FRVLTRATQEEVAVNVT 901

Query: 356  RVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFTHCAPEIKQLFESVAKS 195
            RV++   +V + H  GL       +K     F  ++  + A E K + E + KS
Sbjct: 902  RVIIH--VVAQCHEEGLESHLRSYVK-----FAYKAEPYVASEYKTVHEELTKS 948

>Y228_BORBU (O51246) Hypothetical protein BB0228|
          Length = 971

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 17/65 (26%), Positives = 35/65 (53%)
 Frame = -3

Query: 509 VTNLDTEGRYLFLNAIANQLRYPNSHTHYFSFIILYLFAEATQEHIQEQVTRVLLERLIV 330
           +TN   +G Y F N I   L + N +T     +I ++ +  T++ ++E++ + L+ R I 
Sbjct: 423 ITNKLEKGIYYFENLIEKYLIFNNHYT-----LISFIPSHDTEKEMEEEIEKKLMAREIE 477

Query: 329 NRPHP 315
            + +P
Sbjct: 478 IKQNP 482


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,224,282
Number of Sequences: 219361
Number of extensions: 1776167
Number of successful extensions: 4704
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4702
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)