>Y913_BACHD (Q9KED9) UPF0249 protein BH0913|
          Length = 237

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 148 FDGTSSMCCHPSYIPPLIR 204
           +DGT  + CHP+YI  ++R
Sbjct: 191 YDGTIEIMCHPAYIDEVLR 209

>KPSE_ECOL6 (P62587) Capsule polysaccharide export inner-membrane protein kpsE|
          Length = 382

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 180 WMAAHXXGAIKSNI*KHSSRALVLSPQEVPLIRQSFLXIFS 58
           WM A       ++I KH ++ ++L+P  V LI   +L IFS
Sbjct: 11  WMRARLSAISLADIQKHLAKIIILAPMAVLLI---YLAIFS 48

>KPSE5_ECOLI (P62586) Capsule polysaccharide export inner-membrane protein kpsE|
          Length = 382

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 180 WMAAHXXGAIKSNI*KHSSRALVLSPQEVPLIRQSFLXIFS 58
           WM A       ++I KH ++ ++L+P  V LI   +L IFS
Sbjct: 11  WMRARLSAISLADIQKHLAKIIILAPMAVLLI---YLAIFS 48

>STP22_YEAST (P25604) Suppressor protein STP22 of temperature-sensitive|
           alpha-factor receptor and arginine permease (Vacuolar
           protein sorting-associated protein VPS23)
          Length = 385

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 108 IKQGREMSASRYLI*WHLXXV 170
           +KQGRE++  ++L+ WH+  +
Sbjct: 360 VKQGRELARQQFLVRWHIQRI 380


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,799,697
Number of Sequences: 219361
Number of extensions: 524847
Number of successful extensions: 1308
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)