Clone Name | rbasd20j03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK066310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063E15, full insert sequence Length = 3170 Score = 67.9 bits (34), Expect = 2e-08 Identities = 91/109 (83%), Gaps = 6/109 (5%) Strand = Plus / Minus Query: 179 catcatatattccacctcttatcagatggattgtgaggaacagcaac-gc-----tgctc 232 |||||||||| ||| ||| ||||||||| |||| ||||||||| ||| || |||| Sbjct: 2848 catcatatatgccatctcctatcagatgaattgggaggaacaggaacagcaccattgctt 2789 Query: 233 ttcacattttgctgagcctgggaagatgaccgttgcatgcgangagatg 281 |||||||| |||||||| ||||| ||||| |||||||||||| |||||| Sbjct: 2788 ttcacattctgctgagcttgggatgatgatcgttgcatgcgaggagatg 2740
>ref|XM_474230.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2682 Score = 65.9 bits (33), Expect = 6e-08 Identities = 59/68 (86%) Strand = Plus / Minus Query: 214 aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 273 |||||||||| | |||| |||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 2643 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 2584 Query: 274 angagatg 281 | |||||| Sbjct: 2583 aggagatg 2576
>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01, complete sequence Length = 163448 Score = 65.9 bits (33), Expect = 6e-08 Identities = 59/68 (86%) Strand = Plus / Minus Query: 214 aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 273 |||||||||| | |||| |||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 90590 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 90531 Query: 274 angagatg 281 | |||||| Sbjct: 90530 aggagatg 90523
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 65.9 bits (33), Expect = 6e-08 Identities = 59/68 (86%) Strand = Plus / Minus Query: 214 aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 273 |||||||||| | |||| |||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 33878691 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 33878632 Query: 274 angagatg 281 | |||||| Sbjct: 33878631 aggagatg 33878624
>gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, complete sequence Length = 194380 Score = 42.1 bits (21), Expect = 0.93 Identities = 23/24 (95%) Strand = Plus / Plus Query: 52 ttccaaggaaaaaatatnaagaaa 75 ||||||||||||||||| |||||| Sbjct: 42422 ttccaaggaaaaaatatgaagaaa 42445
>ref|XM_865972.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 3 (LOC529923), mRNA Length = 2313 Score = 42.1 bits (21), Expect = 0.93 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctcc 44 ||| |||||||||||||||||||| Sbjct: 292 atggtgaagctgctgctcttctcc 315
>ref|XM_608385.2| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 2 (LOC529923), mRNA Length = 2184 Score = 42.1 bits (21), Expect = 0.93 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctcc 44 ||| |||||||||||||||||||| Sbjct: 292 atggtgaagctgctgctcttctcc 315
>ref|XM_877301.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 4 (LOC529923), mRNA Length = 2340 Score = 42.1 bits (21), Expect = 0.93 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctcc 44 ||| |||||||||||||||||||| Sbjct: 292 atggtgaagctgctgctcttctcc 315
>ref|XM_853575.1| PREDICTED: Canis familiaris similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 4 (LOC477456), mRNA Length = 2505 Score = 42.1 bits (21), Expect = 0.93 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctcc 44 ||| |||||||||||||||||||| Sbjct: 496 atggtgaagctgctgctcttctcc 519
>ref|XM_534654.2| PREDICTED: Canis familiaris similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 1 (LOC477456), mRNA Length = 2376 Score = 42.1 bits (21), Expect = 0.93 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctcc 44 ||| |||||||||||||||||||| Sbjct: 496 atggtgaagctgctgctcttctcc 519
>ref|XM_844280.1| PREDICTED: Canis familiaris similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 3 (LOC477456), mRNA Length = 2532 Score = 42.1 bits (21), Expect = 0.93 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctcc 44 ||| |||||||||||||||||||| Sbjct: 496 atggtgaagctgctgctcttctcc 519
>gb|AC011288.4| Homo sapiens BAC clone RP11-27B1 from 7, complete sequence Length = 159722 Score = 42.1 bits (21), Expect = 0.93 Identities = 24/25 (96%) Strand = Plus / Plus Query: 134 ttctagatatttgatttgatggcac 158 ||||||||||| ||||||||||||| Sbjct: 94586 ttctagatattggatttgatggcac 94610
>gb|AC110238.10| Mus musculus chromosome 5, clone RP23-106D12, complete sequence Length = 197964 Score = 42.1 bits (21), Expect = 0.93 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 ttccaaggaaaaaatatnaagaaa 75 ||||||||||||||||| |||||| Sbjct: 11400 ttccaaggaaaaaatatgaagaaa 11377
>emb|BX255965.12| Zebrafish DNA sequence from clone CH211-270C19, complete sequence Length = 148298 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 agcaacgctgctcttcacatt 240 ||||||||||||||||||||| Sbjct: 4974 agcaacgctgctcttcacatt 4994
>ref|XM_509453.1| PREDICTED: Pan troglodytes similar to ABCB9 protein (LOC452335), mRNA Length = 3291 Score = 40.1 bits (20), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctc 43 ||| ||||||||||||||||||| Sbjct: 1192 atggtgaagctgctgctcttctc 1214
>ref|NM_203444.1| Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9 (ABCB9), transcript variant 4, mRNA Length = 3871 Score = 40.1 bits (20), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctc 43 ||| ||||||||||||||||||| Sbjct: 870 atggtgaagctgctgctcttctc 892
>ref|NM_203445.1| Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9 (ABCB9), transcript variant 3, mRNA Length = 3303 Score = 40.1 bits (20), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctc 43 ||| ||||||||||||||||||| Sbjct: 578 atggtgaagctgctgctcttctc 600
>ref|NM_019624.2| Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9 (ABCB9), transcript variant 2, mRNA Length = 3377 Score = 40.1 bits (20), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctc 43 ||| ||||||||||||||||||| Sbjct: 578 atggtgaagctgctgctcttctc 600
>ref|NM_019625.2| Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9 (ABCB9), transcript variant 1, mRNA Length = 3506 Score = 40.1 bits (20), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctc 43 ||| ||||||||||||||||||| Sbjct: 578 atggtgaagctgctgctcttctc 600
>gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, complete sequence Length = 196843 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 gctgctcttcacattttgct 245 |||||||||||||||||||| Sbjct: 126157 gctgctcttcacattttgct 126138
>gb|BC064384.1| Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9, mRNA (cDNA clone MGC:74955 IMAGE:5744451), complete cds Length = 3880 Score = 40.1 bits (20), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctc 43 ||| ||||||||||||||||||| Sbjct: 870 atggtgaagctgctgctcttctc 892
>gb|BC017348.2| Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9, mRNA (cDNA clone MGC:29663 IMAGE:5014247), complete cds Length = 2445 Score = 40.1 bits (20), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctc 43 ||| ||||||||||||||||||| Sbjct: 317 atggtgaagctgctgctcttctc 339
>emb|AL445219.14| Human DNA sequence from clone RP11-71L7 on chromosome 13 Contains a novel gene, complete sequence Length = 103728 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 atcagtattccaaggaaaaa 64 |||||||||||||||||||| Sbjct: 47242 atcagtattccaaggaaaaa 47223
>emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on chromosome 10 Contains part of the PARD3 gene for par-3 partitioning defective 3 homolog (C.elegans), complete sequence Length = 193131 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 gctgctcttcacattttgct 245 |||||||||||||||||||| Sbjct: 122764 gctgctcttcacattttgct 122745
>emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 in linkage group 5, complete sequence Length = 142908 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 tctagatatttgatttgatg 154 |||||||||||||||||||| Sbjct: 119377 tctagatatttgatttgatg 119358
>emb|CR614075.1| full-length cDNA clone CS0DK002YI08 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1772 Score = 40.1 bits (20), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctc 43 ||| ||||||||||||||||||| Sbjct: 510 atggtgaagctgctgctcttctc 532
>dbj|AK027624.1| Homo sapiens cDNA FLJ14718 fis, clone NT2RP3001453, moderately similar to ANTIGEN PEPTIDE TRANSPORTER 2 Length = 2591 Score = 40.1 bits (20), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctc 43 ||| ||||||||||||||||||| Sbjct: 495 atggtgaagctgctgctcttctc 517
>dbj|AB040953.2| Homo sapiens mRNA for KIAA1520 protein, partial cds Length = 6051 Score = 40.1 bits (20), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctc 43 ||| ||||||||||||||||||| Sbjct: 3131 atggtgaagctgctgctcttctc 3153
>gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163077 Score = 40.1 bits (20), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 21 atgntgaagctgctgctcttctc 43 ||| ||||||||||||||||||| Sbjct: 32320 atggtgaagctgctgctcttctc 32298
>gb|AF216494.1|AF216494 Homo sapiens ATP-binding cassette protein ABCB9 (ABCB9) mRNA, complete cds Length = 3512 Score = 40.1 bits (20), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctc 43 ||| ||||||||||||||||||| Sbjct: 590 atggtgaagctgctgctcttctc 612
>dbj|AB177852.1| Homo sapiens mRNA for KIAA1520 splice variant 1 Length = 3440 Score = 40.1 bits (20), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctc 43 ||| ||||||||||||||||||| Sbjct: 514 atggtgaagctgctgctcttctc 536
>dbj|AB112583.1| Homo sapiens TAPL mRNA for TAP-Like isoform 12C, complete cds Length = 2394 Score = 40.1 bits (20), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctc 43 ||| ||||||||||||||||||| Sbjct: 553 atggtgaagctgctgctcttctc 575
>dbj|AB112582.1| Homo sapiens TAPL mRNA for TAP-Like isoform 12B, complete cds Length = 2588 Score = 40.1 bits (20), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctc 43 ||| ||||||||||||||||||| Sbjct: 553 atggtgaagctgctgctcttctc 575
>dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-344L21, complete sequence Length = 186656 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 cttctagatatttgatttga 152 |||||||||||||||||||| Sbjct: 110819 cttctagatatttgatttga 110800
>dbj|AB045381.2| Homo sapiens mRNA for TAPL, complete cds Length = 2398 Score = 40.1 bits (20), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 atgntgaagctgctgctcttctc 43 ||| ||||||||||||||||||| Sbjct: 351 atggtgaagctgctgctcttctc 373 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,442,783 Number of Sequences: 3902068 Number of extensions: 2442783 Number of successful extensions: 42539 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42480 Number of HSP's gapped (non-prelim): 59 length of query: 283 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 261 effective length of database: 17,147,199,772 effective search space: 4475419140492 effective search space used: 4475419140492 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)