ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20j03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK066310.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
2ref|XM_474230.1| Oryza sativa (japonica cultivar-group), predic... 66 6e-08
3emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4,... 66 6e-08
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 66 6e-08
5gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, com... 42 0.93
6ref|XM_865972.1| PREDICTED: Bos taurus similar to ATP-binding ca... 42 0.93
7ref|XM_608385.2| PREDICTED: Bos taurus similar to ATP-binding ca... 42 0.93
8ref|XM_877301.1| PREDICTED: Bos taurus similar to ATP-binding ca... 42 0.93
9ref|XM_853575.1| PREDICTED: Canis familiaris similar to ATP-bind... 42 0.93
10ref|XM_534654.2| PREDICTED: Canis familiaris similar to ATP-bind... 42 0.93
11ref|XM_844280.1| PREDICTED: Canis familiaris similar to ATP-bind... 42 0.93
12gb|AC011288.4| Homo sapiens BAC clone RP11-27B1 from 7, complete... 42 0.93
13gb|AC110238.10| Mus musculus chromosome 5, clone RP23-106D12, co... 42 0.93
14emb|BX255965.12| Zebrafish DNA sequence from clone CH211-270C19,... 42 0.93
15ref|XM_509453.1| PREDICTED: Pan troglodytes similar to ABCB9 pro... 40 3.7
16ref|NM_203444.1| Homo sapiens ATP-binding cassette, sub-family B... 40 3.7
17ref|NM_203445.1| Homo sapiens ATP-binding cassette, sub-family B... 40 3.7
18ref|NM_019624.2| Homo sapiens ATP-binding cassette, sub-family B... 40 3.7
19ref|NM_019625.2| Homo sapiens ATP-binding cassette, sub-family B... 40 3.7
20gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, comp... 40 3.7
21gb|BC064384.1| Homo sapiens ATP-binding cassette, sub-family B (... 40 3.7
22gb|BC017348.2| Homo sapiens ATP-binding cassette, sub-family B (... 40 3.7
23emb|AL445219.14| Human DNA sequence from clone RP11-71L7 on chro... 40 3.7
24emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on ch... 40 3.7
25emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 i... 40 3.7
26emb|CR614075.1| full-length cDNA clone CS0DK002YI08 of HeLa cell... 40 3.7
27dbj|AK027624.1| Homo sapiens cDNA FLJ14718 fis, clone NT2RP30014... 40 3.7
28dbj|AB040953.2| Homo sapiens mRNA for KIAA1520 protein, partial cds 40 3.7
29gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Ca... 40 3.7
30gb|AF216494.1|AF216494 Homo sapiens ATP-binding cassette protein... 40 3.7
31dbj|AB177852.1| Homo sapiens mRNA for KIAA1520 splice variant 1 40 3.7
32dbj|AB112583.1| Homo sapiens TAPL mRNA for TAP-Like isoform 12C,... 40 3.7
33dbj|AB112582.1| Homo sapiens TAPL mRNA for TAP-Like isoform 12B,... 40 3.7
34dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.7
35dbj|AB045381.2| Homo sapiens mRNA for TAPL, complete cds 40 3.7

>dbj|AK066310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063E15, full
            insert sequence
          Length = 3170

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 91/109 (83%), Gaps = 6/109 (5%)
 Strand = Plus / Minus

                                                                        
Query: 179  catcatatattccacctcttatcagatggattgtgaggaacagcaac-gc-----tgctc 232
            |||||||||| ||| ||| ||||||||| |||| ||||||||| ||| ||     |||| 
Sbjct: 2848 catcatatatgccatctcctatcagatgaattgggaggaacaggaacagcaccattgctt 2789

                                                             
Query: 233  ttcacattttgctgagcctgggaagatgaccgttgcatgcgangagatg 281
            |||||||| |||||||| ||||| ||||| |||||||||||| ||||||
Sbjct: 2788 ttcacattctgctgagcttgggatgatgatcgttgcatgcgaggagatg 2740



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>ref|XM_474230.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2682

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 214  aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 273
            |||||||||| |  |||| |||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 2643 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 2584

                    
Query: 274  angagatg 281
            | ||||||
Sbjct: 2583 aggagatg 2576



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>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01,
             complete sequence
          Length = 163448

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                         
Query: 214   aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 273
             |||||||||| |  |||| |||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 90590 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 90531

                     
Query: 274   angagatg 281
             | ||||||
Sbjct: 90530 aggagatg 90523



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                            
Query: 214      aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 273
                |||||||||| |  |||| |||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 33878691 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 33878632

                        
Query: 274      angagatg 281
                | ||||||
Sbjct: 33878631 aggagatg 33878624



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>gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, complete sequence
          Length = 194380

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 52    ttccaaggaaaaaatatnaagaaa 75
             ||||||||||||||||| ||||||
Sbjct: 42422 ttccaaggaaaaaatatgaagaaa 42445



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>ref|XM_865972.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
           (MDR/TAP), member 9 isoform 2, transcript variant 3
           (LOC529923), mRNA
          Length = 2313

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 21  atgntgaagctgctgctcttctcc 44
           ||| ||||||||||||||||||||
Sbjct: 292 atggtgaagctgctgctcttctcc 315



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>ref|XM_608385.2| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
           (MDR/TAP), member 9 isoform 2, transcript variant 2
           (LOC529923), mRNA
          Length = 2184

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 21  atgntgaagctgctgctcttctcc 44
           ||| ||||||||||||||||||||
Sbjct: 292 atggtgaagctgctgctcttctcc 315



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>ref|XM_877301.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
           (MDR/TAP), member 9 isoform 2, transcript variant 4
           (LOC529923), mRNA
          Length = 2340

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 21  atgntgaagctgctgctcttctcc 44
           ||| ||||||||||||||||||||
Sbjct: 292 atggtgaagctgctgctcttctcc 315



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>ref|XM_853575.1| PREDICTED: Canis familiaris similar to ATP-binding cassette,
           sub-family B (MDR/TAP), member 9 isoform 2, transcript
           variant 4 (LOC477456), mRNA
          Length = 2505

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 21  atgntgaagctgctgctcttctcc 44
           ||| ||||||||||||||||||||
Sbjct: 496 atggtgaagctgctgctcttctcc 519



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>ref|XM_534654.2| PREDICTED: Canis familiaris similar to ATP-binding cassette,
           sub-family B (MDR/TAP), member 9 isoform 2, transcript
           variant 1 (LOC477456), mRNA
          Length = 2376

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 21  atgntgaagctgctgctcttctcc 44
           ||| ||||||||||||||||||||
Sbjct: 496 atggtgaagctgctgctcttctcc 519



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>ref|XM_844280.1| PREDICTED: Canis familiaris similar to ATP-binding cassette,
           sub-family B (MDR/TAP), member 9 isoform 2, transcript
           variant 3 (LOC477456), mRNA
          Length = 2532

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 21  atgntgaagctgctgctcttctcc 44
           ||| ||||||||||||||||||||
Sbjct: 496 atggtgaagctgctgctcttctcc 519



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>gb|AC011288.4| Homo sapiens BAC clone RP11-27B1 from 7, complete sequence
          Length = 159722

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 134   ttctagatatttgatttgatggcac 158
             ||||||||||| |||||||||||||
Sbjct: 94586 ttctagatattggatttgatggcac 94610



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>gb|AC110238.10| Mus musculus chromosome 5, clone RP23-106D12, complete sequence
          Length = 197964

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 52    ttccaaggaaaaaatatnaagaaa 75
             ||||||||||||||||| ||||||
Sbjct: 11400 ttccaaggaaaaaatatgaagaaa 11377



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>emb|BX255965.12| Zebrafish DNA sequence from clone CH211-270C19, complete sequence
          Length = 148298

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 220  agcaacgctgctcttcacatt 240
            |||||||||||||||||||||
Sbjct: 4974 agcaacgctgctcttcacatt 4994



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>ref|XM_509453.1| PREDICTED: Pan troglodytes similar to ABCB9 protein (LOC452335), mRNA
          Length = 3291

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 21   atgntgaagctgctgctcttctc 43
            ||| |||||||||||||||||||
Sbjct: 1192 atggtgaagctgctgctcttctc 1214



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>ref|NM_203444.1| Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9
           (ABCB9), transcript variant 4, mRNA
          Length = 3871

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 21  atgntgaagctgctgctcttctc 43
           ||| |||||||||||||||||||
Sbjct: 870 atggtgaagctgctgctcttctc 892



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>ref|NM_203445.1| Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9
           (ABCB9), transcript variant 3, mRNA
          Length = 3303

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 21  atgntgaagctgctgctcttctc 43
           ||| |||||||||||||||||||
Sbjct: 578 atggtgaagctgctgctcttctc 600



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>ref|NM_019624.2| Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9
           (ABCB9), transcript variant 2, mRNA
          Length = 3377

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 21  atgntgaagctgctgctcttctc 43
           ||| |||||||||||||||||||
Sbjct: 578 atggtgaagctgctgctcttctc 600



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>ref|NM_019625.2| Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9
           (ABCB9), transcript variant 1, mRNA
          Length = 3506

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 21  atgntgaagctgctgctcttctc 43
           ||| |||||||||||||||||||
Sbjct: 578 atggtgaagctgctgctcttctc 600



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>gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, complete sequence
          Length = 196843

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    gctgctcttcacattttgct 245
              ||||||||||||||||||||
Sbjct: 126157 gctgctcttcacattttgct 126138



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>gb|BC064384.1| Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member
           9, mRNA (cDNA clone MGC:74955 IMAGE:5744451), complete
           cds
          Length = 3880

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 21  atgntgaagctgctgctcttctc 43
           ||| |||||||||||||||||||
Sbjct: 870 atggtgaagctgctgctcttctc 892



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>gb|BC017348.2| Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member
           9, mRNA (cDNA clone MGC:29663 IMAGE:5014247), complete
           cds
          Length = 2445

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 21  atgntgaagctgctgctcttctc 43
           ||| |||||||||||||||||||
Sbjct: 317 atggtgaagctgctgctcttctc 339



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>emb|AL445219.14| Human DNA sequence from clone RP11-71L7 on chromosome 13 Contains a
             novel gene, complete sequence
          Length = 103728

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    atcagtattccaaggaaaaa 64
             ||||||||||||||||||||
Sbjct: 47242 atcagtattccaaggaaaaa 47223



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>emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on chromosome 10 Contains part
              of the PARD3 gene for par-3 partitioning defective 3
              homolog (C.elegans), complete sequence
          Length = 193131

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    gctgctcttcacattttgct 245
              ||||||||||||||||||||
Sbjct: 122764 gctgctcttcacattttgct 122745



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>emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 in linkage group 5,
              complete sequence
          Length = 142908

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    tctagatatttgatttgatg 154
              ||||||||||||||||||||
Sbjct: 119377 tctagatatttgatttgatg 119358



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>emb|CR614075.1| full-length cDNA clone CS0DK002YI08 of HeLa cells Cot 25-normalized
           of Homo sapiens (human)
          Length = 1772

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 21  atgntgaagctgctgctcttctc 43
           ||| |||||||||||||||||||
Sbjct: 510 atggtgaagctgctgctcttctc 532



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>dbj|AK027624.1| Homo sapiens cDNA FLJ14718 fis, clone NT2RP3001453, moderately
           similar to ANTIGEN PEPTIDE TRANSPORTER 2
          Length = 2591

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 21  atgntgaagctgctgctcttctc 43
           ||| |||||||||||||||||||
Sbjct: 495 atggtgaagctgctgctcttctc 517



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>dbj|AB040953.2| Homo sapiens mRNA for KIAA1520 protein, partial cds
          Length = 6051

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 21   atgntgaagctgctgctcttctc 43
            ||| |||||||||||||||||||
Sbjct: 3131 atggtgaagctgctgctcttctc 3153



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>gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163077

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 21    atgntgaagctgctgctcttctc 43
             ||| |||||||||||||||||||
Sbjct: 32320 atggtgaagctgctgctcttctc 32298



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>gb|AF216494.1|AF216494 Homo sapiens ATP-binding cassette protein ABCB9 (ABCB9) mRNA,
           complete cds
          Length = 3512

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 21  atgntgaagctgctgctcttctc 43
           ||| |||||||||||||||||||
Sbjct: 590 atggtgaagctgctgctcttctc 612



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>dbj|AB177852.1| Homo sapiens mRNA for KIAA1520 splice variant 1
          Length = 3440

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 21  atgntgaagctgctgctcttctc 43
           ||| |||||||||||||||||||
Sbjct: 514 atggtgaagctgctgctcttctc 536



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>dbj|AB112583.1| Homo sapiens TAPL mRNA for TAP-Like isoform 12C, complete cds
          Length = 2394

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 21  atgntgaagctgctgctcttctc 43
           ||| |||||||||||||||||||
Sbjct: 553 atggtgaagctgctgctcttctc 575



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>dbj|AB112582.1| Homo sapiens TAPL mRNA for TAP-Like isoform 12B, complete cds
          Length = 2588

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 21  atgntgaagctgctgctcttctc 43
           ||| |||||||||||||||||||
Sbjct: 553 atggtgaagctgctgctcttctc 575



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>dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-344L21, complete
              sequence
          Length = 186656

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    cttctagatatttgatttga 152
              ||||||||||||||||||||
Sbjct: 110819 cttctagatatttgatttga 110800



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>dbj|AB045381.2| Homo sapiens mRNA for TAPL, complete cds
          Length = 2398

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 21  atgntgaagctgctgctcttctc 43
           ||| |||||||||||||||||||
Sbjct: 351 atggtgaagctgctgctcttctc 373


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,442,783
Number of Sequences: 3902068
Number of extensions: 2442783
Number of successful extensions: 42539
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42480
Number of HSP's gapped (non-prelim): 59
length of query: 283
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 261
effective length of database: 17,147,199,772
effective search space: 4475419140492
effective search space used: 4475419140492
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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