ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20i24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107932.1| Zea mays PCO078506 mRNA sequence 228 1e-56
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 222 7e-55
3dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic D... 222 7e-55
4dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic D... 222 7e-55
5dbj|AK106188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 7e-55
6dbj|AK104453.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 7e-55
7dbj|AK099185.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 7e-55
8dbj|AK060020.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 7e-55
9emb|AL136325.6| Human DNA sequence from clone RP5-983F16 on chro... 46 0.092
10emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genom... 42 1.4
11gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.4
12gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, com... 40 5.7
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.7
14gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosom... 40 5.7
15gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, comple... 40 5.7
16gb|BC043890.1| Xenopus laevis chondromodulin-I precursor, mRNA (... 40 5.7
17emb|CR956420.2| Pig DNA sequence from clone CH242-37G9 on chromo... 40 5.7
18gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.7
19emb|AL445672.15| Human DNA sequence from clone RP11-66D1 on chro... 40 5.7
20emb|AL356503.18| Human DNA sequence from clone RP13-159A24 on ch... 40 5.7
21gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 5.7
22emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.7
23emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 40 5.7
24emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 40 5.7
25emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 40 5.7
26emb|AJ620335.1| Oryza sativa (indica cultivar-group) mRNA for E3... 40 5.7
27gb|AC113029.23| Mus musculus chromosome 5, clone RP23-206J17, co... 40 5.7
28gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.7
29gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 5.7
30dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
31ref|XM_577795.1| PREDICTED: Rattus norvegicus similar to LRRGT00... 40 5.7
32emb|CT806423.2| Pan troglodytes chromosome X clone CH251-25B01 m... 40 5.7
33emb|CR956387.14| Pig DNA sequence from clone CH242-148I13 on chr... 40 5.7
34emb|AJ867287.1| Oryza sativa (indica cultivar-group) mRNA for ub... 40 5.7 
>gb|AY107932.1| Zea mays PCO078506 mRNA sequence
          Length = 920

 Score =  228 bits (115), Expect = 1e-56
 Identities = 147/158 (93%)
 Strand = Plus / Minus

                                                                       
Query: 264 gctagactaggtagtcatagtagaccagcaggaggttgtcggggacnatgaggggcaggc 323
           |||||||||||||||| |||||||||||||| | |||||||||||| || ||||||||||
Sbjct: 539 gctagactaggtagtcgtagtagaccagcagcatgttgtcggggacgatcaggggcaggc 480

                                                                       
Query: 324 tgtcgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatca 383
           |||||||||||||| |||||||| ||||||||||||||||||| ||||| | ||||||||
Sbjct: 479 tgtcgatgaagctgaggaagtgcttcacgttctccttctccagcgtcaccgtgtcgatca 420

                                                 
Query: 384 cgtcgtcgtcgccggtgagcacccacaggtccctggac 421
           ||||||||||||||||||||||||||||||| ||||||
Sbjct: 419 cgtcgtcgtcgccggtgagcacccacaggtctctggac 382



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 41/45 (91%), Gaps = 2/45 (4%)
 Strand = Plus / Minus

                                                        
Query: 161 cggcttcgctt-gccagactcgatctgcggaggatggtcggctgc 204
           ||||||||||| |||| |||||||| || ||||||||||||||||
Sbjct: 674 cggcttcgctttgcca-actcgatccgcagaggatggtcggctgc 631
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  222 bits (112), Expect = 7e-55
 Identities = 141/151 (93%)
 Strand = Plus / Minus

                                                                            
Query: 267      agactaggtagtcatagtagaccagcaggaggttgtcggggacnatgaggggcaggctgt 326
                ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 39425338 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 39425279

                                                                            
Query: 327      cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 386
                ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 39425278 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 39425219

                                               
Query: 387      cgtcgtcgccggtgagcacccacaggtccct 417
                ||||||| |||||||||||||| ||||||||
Sbjct: 39425218 cgtcgtctccggtgagcacccagaggtccct 39425188



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                         
Query: 165      ttcgcttgccagactcgatctgcggaggatggtcggctgcc 205
                |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 39425440 ttcgctagccagactcaatctgcagaggatggtcggctgcc 39425400
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>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           BAC clone:B1417F08
          Length = 155536

 Score =  222 bits (112), Expect = 7e-55
 Identities = 141/151 (93%)
 Strand = Plus / Minus

                                                                       
Query: 267 agactaggtagtcatagtagaccagcaggaggttgtcggggacnatgaggggcaggctgt 326
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 352 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 293

                                                                       
Query: 327 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 386
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 292 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 233

                                          
Query: 387 cgtcgtcgccggtgagcacccacaggtccct 417
           ||||||| |||||||||||||| ||||||||
Sbjct: 232 cgtcgtctccggtgagcacccagaggtccct 202



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 165 ttcgcttgccagactcgatctgcggaggatggtcggctgcc 205
           |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 454 ttcgctagccagactcaatctgcagaggatggtcggctgcc 414
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>dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             fosmid clone:OSJNOa108M02
          Length = 38208

 Score =  222 bits (112), Expect = 7e-55
 Identities = 141/151 (93%)
 Strand = Plus / Minus

                                                                         
Query: 267   agactaggtagtcatagtagaccagcaggaggttgtcggggacnatgaggggcaggctgt 326
             ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 35862 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 35803

                                                                         
Query: 327   cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 386
             ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 35802 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 35743

                                            
Query: 387   cgtcgtcgccggtgagcacccacaggtccct 417
             ||||||| |||||||||||||| ||||||||
Sbjct: 35742 cgtcgtctccggtgagcacccagaggtccct 35712



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 165   ttcgcttgccagactcgatctgcggaggatggtcggctgcc 205
             |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 35964 ttcgctagccagactcaatctgcagaggatggtcggctgcc 35924
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>dbj|AK106188.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D10, full
           insert sequence
          Length = 1173

 Score =  222 bits (112), Expect = 7e-55
 Identities = 141/151 (93%)
 Strand = Plus / Minus

                                                                       
Query: 267 agactaggtagtcatagtagaccagcaggaggttgtcggggacnatgaggggcaggctgt 326
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 951 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 892

                                                                       
Query: 327 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 386
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 891 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 832

                                          
Query: 387 cgtcgtcgccggtgagcacccacaggtccct 417
           ||||||| |||||||||||||| ||||||||
Sbjct: 831 cgtcgtctccggtgagcacccagaggtccct 801



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 165  ttcgcttgccagactcgatctgcggaggatggtcggctgcc 205
            |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 1053 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1013
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>dbj|AK104453.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H10, full
           insert sequence
          Length = 1290

 Score =  222 bits (112), Expect = 7e-55
 Identities = 141/151 (93%)
 Strand = Plus / Minus

                                                                       
Query: 267 agactaggtagtcatagtagaccagcaggaggttgtcggggacnatgaggggcaggctgt 326
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 951 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 892

                                                                       
Query: 327 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 386
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 891 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 832

                                          
Query: 387 cgtcgtcgccggtgagcacccacaggtccct 417
           ||||||| |||||||||||||| ||||||||
Sbjct: 831 cgtcgtctccggtgagcacccagaggtccct 801



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 165  ttcgcttgccagactcgatctgcggaggatggtcggctgcc 205
            |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 1053 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1013
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>dbj|AK099185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105K15, full
           insert sequence
          Length = 1291

 Score =  222 bits (112), Expect = 7e-55
 Identities = 141/151 (93%)
 Strand = Plus / Minus

                                                                       
Query: 267 agactaggtagtcatagtagaccagcaggaggttgtcggggacnatgaggggcaggctgt 326
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 952 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 893

                                                                       
Query: 327 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 386
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 892 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 833

                                          
Query: 387 cgtcgtcgccggtgagcacccacaggtccct 417
           ||||||| |||||||||||||| ||||||||
Sbjct: 832 cgtcgtctccggtgagcacccagaggtccct 802



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 165  ttcgcttgccagactcgatctgcggaggatggtcggctgcc 205
            |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 1054 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1014
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>dbj|AK060020.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-G11, full
           insert sequence
          Length = 1296

 Score =  222 bits (112), Expect = 7e-55
 Identities = 141/151 (93%)
 Strand = Plus / Minus

                                                                       
Query: 267 agactaggtagtcatagtagaccagcaggaggttgtcggggacnatgaggggcaggctgt 326
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 951 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 892

                                                                       
Query: 327 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 386
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 891 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 832

                                          
Query: 387 cgtcgtcgccggtgagcacccacaggtccct 417
           ||||||| |||||||||||||| ||||||||
Sbjct: 831 cgtcgtctccggtgagcacccagaggtccct 801



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 165  ttcgcttgccagactcgatctgcggaggatggtcggctgcc 205
            |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 1053 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1013
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>emb|AL136325.6| Human DNA sequence from clone RP5-983F16 on chromosome 1p21.3-22.2
             Contains a eukaryotic translation elongation factor 1
             alpha 1 (EEF1A1) pseudogene and a CpG island, complete
             sequence
          Length = 133052

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 53    ccatcaaacacttcttgcttctg 75
             |||||||||||||||||||||||
Sbjct: 58849 ccatcaaacacttcttgcttctg 58871
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>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 377    tcgatcacgtcgtcgtcgccg 397
              |||||||||||||||||||||
Sbjct: 223026 tcgatcacgtcgtcgtcgccg 223006
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 374     gggtcgatcacgtcgtcgtcg 394
               |||||||||||||||||||||
Sbjct: 1343975 gggtcgatcacgtcgtcgtcg 1343995
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>gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, complete sequence
          Length = 248320

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 329    atgaagctgtggaagtgcct 348
              ||||||||||||||||||||
Sbjct: 222590 atgaagctgtggaagtgcct 222609
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 320      aggctgtcgatgaagctgtggaag 343
                |||||||||||| |||||||||||
Sbjct: 12900182 aggctgtcgatgtagctgtggaag 12900159
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>gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosome 1, complete sequence
          Length = 200595

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    tgagcacccacaggtccctg 418
              ||||||||||||||||||||
Sbjct: 168559 tgagcacccacaggtccctg 168540
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>gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, complete sequence
          Length = 203739

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 399   tgagcacccacaggtccctg 418
             ||||||||||||||||||||
Sbjct: 34929 tgagcacccacaggtccctg 34910
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>gb|BC043890.1| Xenopus laevis chondromodulin-I precursor, mRNA (cDNA clone
           MGC:53801 IMAGE:5542016), complete cds
          Length = 1434

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 327 cgatgaagctgtggaagtgc 346
           ||||||||||||||||||||
Sbjct: 351 cgatgaagctgtggaagtgc 370
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>emb|CR956420.2| Pig DNA sequence from clone CH242-37G9 on chromosome 17, complete
            sequence
          Length = 65276

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   aacaagtaaaaaccttcacc 46
            ||||||||||||||||||||
Sbjct: 5094 aacaagtaaaaaccttcacc 5075
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 372     cggggtcgatcacgtcgtcg 391
               ||||||||||||||||||||
Sbjct: 3549017 cggggtcgatcacgtcgtcg 3548998
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>emb|AL445672.15| Human DNA sequence from clone RP11-66D1 on chromosome 9, complete
             sequence
          Length = 113031

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   cctcacgttctccttctcca 365
             ||||||||||||||||||||
Sbjct: 77755 cctcacgttctccttctcca 77736
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>emb|AL356503.18| Human DNA sequence from clone RP13-159A24 on chromosome Xq27.1-28,
             complete sequence
          Length = 147043

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   aaagccagagcaacaaataa 126
             ||||||||||||||||||||
Sbjct: 12145 aaagccagagcaacaaataa 12126
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 375     ggtcgatcacgtcgtcgtcg 394
               ||||||||||||||||||||
Sbjct: 2378644 ggtcgatcacgtcgtcgtcg 2378625
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>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 316  gggcaggctgtcgatgaagc 335
            ||||||||||||||||||||
Sbjct: 3496 gggcaggctgtcgatgaagc 3515
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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 316    gggcaggctgtcgatgaagc 335
              ||||||||||||||||||||
Sbjct: 116713 gggcaggctgtcgatgaagc 116732
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>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 316    gggcaggctgtcgatgaagc 335
              ||||||||||||||||||||
Sbjct: 111837 gggcaggctgtcgatgaagc 111856
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>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 382   cacgtcgtcgtcgccggtgagcac 405
             ||||||||||| ||||||||||||
Sbjct: 27385 cacgtcgtcgtggccggtgagcac 27362
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>emb|AJ620335.1| Oryza sativa (indica cultivar-group) mRNA for E3 ubiquitin ligase
           (ubl gene)
          Length = 762

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 398 gtgagcacccacaggtccct 417
           ||||||||||||||||||||
Sbjct: 629 gtgagcacccacaggtccct 610
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>gb|AC113029.23| Mus musculus chromosome 5, clone RP23-206J17, complete sequence
          Length = 223809

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 329    atgaagctgtggaagtgcct 348
              ||||||||||||||||||||
Sbjct: 178302 atgaagctgtggaagtgcct 178283
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>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0094H06, from chromosome 3, complete sequence
          Length = 118075

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 320   aggctgtcgatgaagctgtggaag 343
             |||||||||||| |||||||||||
Sbjct: 39327 aggctgtcgatgtagctgtggaag 39350
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete
              genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 384    cgtcgtcgtcgccggtgagc 403
              ||||||||||||||||||||
Sbjct: 446772 cgtcgtcgtcgccggtgagc 446791
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 320      aggctgtcgatgaagctgtggaag 343
                |||||||||||| |||||||||||
Sbjct: 12896945 aggctgtcgatgtagctgtggaag 12896922
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>ref|XM_577795.1| PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC502330), mRNA
          Length = 4653

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  cggccccggcttcgcttgcc 174
            ||||||||||||||||||||
Sbjct: 4559 cggccccggcttcgcttgcc 4540
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>emb|CT806423.2| Pan troglodytes chromosome X clone CH251-25B01 map Xq28, complete
              sequence
          Length = 220032

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    aaagccagagcaacaaataa 126
              ||||||||||||||||||||
Sbjct: 108625 aaagccagagcaacaaataa 108606
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>emb|CR956387.14| Pig DNA sequence from clone CH242-148I13 on chromosome 17, complete
            sequence
          Length = 66802

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   aacaagtaaaaaccttcacc 46
            ||||||||||||||||||||
Sbjct: 5094 aacaagtaaaaaccttcacc 5075
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>emb|AJ867287.1| Oryza sativa (indica cultivar-group) mRNA for ubiquitin ligase E3
           (ubl gene)
          Length = 762

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 398 gtgagcacccacaggtccct 417
           ||||||||||||||||||||
Sbjct: 629 gtgagcacccacaggtccct 610


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,021,643
Number of Sequences: 3902068
Number of extensions: 3021643
Number of successful extensions: 62492
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62178
Number of HSP's gapped (non-prelim): 314
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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