ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20i23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107932.1| Zea mays PCO078506 mRNA sequence 236 5e-59
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 220 3e-54
3dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic D... 220 3e-54
4dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic D... 220 3e-54
5dbj|AK106188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 3e-54
6dbj|AK104453.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 3e-54
7dbj|AK099185.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 3e-54
8dbj|AK060020.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 3e-54
9gb|AC118928.13| Mus musculus chromosome 16, clone RP23-416J10, c... 42 1.5
10emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genom... 42 1.5
11gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosom... 42 1.5
12gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.5
13gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, com... 40 5.8
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.8
15gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosom... 40 5.8
16emb|CT010495.9| Mouse DNA sequence from clone RP23-226G14 on chr... 40 5.8
17gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, comple... 40 5.8
18gb|BC043890.1| Xenopus laevis chondromodulin-I precursor, mRNA (... 40 5.8
19gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.8
20emb|AL445672.15| Human DNA sequence from clone RP11-66D1 on chro... 40 5.8
21emb|AL356503.18| Human DNA sequence from clone RP13-159A24 on ch... 40 5.8
22gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 5.8
23emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.8
24emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 40 5.8
25emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 40 5.8
26emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 40 5.8
27emb|AJ620335.1| Oryza sativa (indica cultivar-group) mRNA for E3... 40 5.8
28gb|AC113029.23| Mus musculus chromosome 5, clone RP23-206J17, co... 40 5.8
29gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.8
30gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 5.8
31dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
32ref|XM_577795.1| PREDICTED: Rattus norvegicus similar to LRRGT00... 40 5.8
33gb|AC154423.2| Mus musculus BAC clone RP24-221B7 from 17, comple... 40 5.8
34emb|CT806423.2| Pan troglodytes chromosome X clone CH251-25B01 m... 40 5.8
35gb|AC107776.12| Mus musculus chromosome 17, clone RP23-92G2, com... 40 5.8
36emb|AJ867287.1| Oryza sativa (indica cultivar-group) mRNA for ub... 40 5.8 
>gb|AY107932.1| Zea mays PCO078506 mRNA sequence
          Length = 920

 Score =  236 bits (119), Expect = 5e-59
 Identities = 152/163 (93%)
 Strand = Plus / Minus

                                                                       
Query: 265 gctagactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggc 324
           |||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 539 gctagactaggtagtcgtagtagaccagcagcatgttgtcggggacgatcaggggcaggc 480

                                                                       
Query: 325 tgtcgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatca 384
           |||||||||||||| |||||||| ||||||||||||||||||| ||||| | ||||||||
Sbjct: 479 tgtcgatgaagctgaggaagtgcttcacgttctccttctccagcgtcaccgtgtcgatca 420

                                                      
Query: 385 cgtcgtcgtcgccggtgagcacccacaggtccctggactggac 427
           ||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 419 cgtcgtcgtcgccggtgagcacccacaggtctctggaccggac 377



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 41/45 (91%), Gaps = 2/45 (4%)
 Strand = Plus / Minus

                                                        
Query: 162 cggcttcgctt-gccagactcgatctgcggaggatggtcggctgc 205
           ||||||||||| |||| |||||||| || ||||||||||||||||
Sbjct: 674 cggcttcgctttgcca-actcgatccgcagaggatggtcggctgc 631
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  220 bits (111), Expect = 3e-54
 Identities = 141/151 (93%)
 Strand = Plus / Minus

                                                                            
Query: 268      agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 327
                ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 39425338 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 39425279

                                                                            
Query: 328      cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 387
                ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 39425278 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 39425219

                                               
Query: 388      cgtcgtcgccggtgagcacccacaggtccct 418
                ||||||| |||||||||||||| ||||||||
Sbjct: 39425218 cgtcgtctccggtgagcacccagaggtccct 39425188



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                         
Query: 166      ttcgcttgccagactcgatctgcggaggatggtcggctgcc 206
                |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 39425440 ttcgctagccagactcaatctgcagaggatggtcggctgcc 39425400
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>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           BAC clone:B1417F08
          Length = 155536

 Score =  220 bits (111), Expect = 3e-54
 Identities = 141/151 (93%)
 Strand = Plus / Minus

                                                                       
Query: 268 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 327
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 352 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 293

                                                                       
Query: 328 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 387
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 292 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 233

                                          
Query: 388 cgtcgtcgccggtgagcacccacaggtccct 418
           ||||||| |||||||||||||| ||||||||
Sbjct: 232 cgtcgtctccggtgagcacccagaggtccct 202



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 166 ttcgcttgccagactcgatctgcggaggatggtcggctgcc 206
           |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 454 ttcgctagccagactcaatctgcagaggatggtcggctgcc 414
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>dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             fosmid clone:OSJNOa108M02
          Length = 38208

 Score =  220 bits (111), Expect = 3e-54
 Identities = 141/151 (93%)
 Strand = Plus / Minus

                                                                         
Query: 268   agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 327
             ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 35862 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 35803

                                                                         
Query: 328   cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 387
             ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 35802 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 35743

                                            
Query: 388   cgtcgtcgccggtgagcacccacaggtccct 418
             ||||||| |||||||||||||| ||||||||
Sbjct: 35742 cgtcgtctccggtgagcacccagaggtccct 35712



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 166   ttcgcttgccagactcgatctgcggaggatggtcggctgcc 206
             |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 35964 ttcgctagccagactcaatctgcagaggatggtcggctgcc 35924
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>dbj|AK106188.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D10, full
           insert sequence
          Length = 1173

 Score =  220 bits (111), Expect = 3e-54
 Identities = 141/151 (93%)
 Strand = Plus / Minus

                                                                       
Query: 268 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 327
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 951 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 892

                                                                       
Query: 328 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 387
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 891 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 832

                                          
Query: 388 cgtcgtcgccggtgagcacccacaggtccct 418
           ||||||| |||||||||||||| ||||||||
Sbjct: 831 cgtcgtctccggtgagcacccagaggtccct 801



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 166  ttcgcttgccagactcgatctgcggaggatggtcggctgcc 206
            |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 1053 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1013
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>dbj|AK104453.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H10, full
           insert sequence
          Length = 1290

 Score =  220 bits (111), Expect = 3e-54
 Identities = 141/151 (93%)
 Strand = Plus / Minus

                                                                       
Query: 268 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 327
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 951 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 892

                                                                       
Query: 328 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 387
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 891 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 832

                                          
Query: 388 cgtcgtcgccggtgagcacccacaggtccct 418
           ||||||| |||||||||||||| ||||||||
Sbjct: 831 cgtcgtctccggtgagcacccagaggtccct 801



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 166  ttcgcttgccagactcgatctgcggaggatggtcggctgcc 206
            |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 1053 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1013
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>dbj|AK099185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105K15, full
           insert sequence
          Length = 1291

 Score =  220 bits (111), Expect = 3e-54
 Identities = 141/151 (93%)
 Strand = Plus / Minus

                                                                       
Query: 268 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 327
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 952 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 893

                                                                       
Query: 328 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 387
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 892 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 833

                                          
Query: 388 cgtcgtcgccggtgagcacccacaggtccct 418
           ||||||| |||||||||||||| ||||||||
Sbjct: 832 cgtcgtctccggtgagcacccagaggtccct 802



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 166  ttcgcttgccagactcgatctgcggaggatggtcggctgcc 206
            |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 1054 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1014
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>dbj|AK060020.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-G11, full
           insert sequence
          Length = 1296

 Score =  220 bits (111), Expect = 3e-54
 Identities = 141/151 (93%)
 Strand = Plus / Minus

                                                                       
Query: 268 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 327
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 951 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 892

                                                                       
Query: 328 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 387
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 891 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 832

                                          
Query: 388 cgtcgtcgccggtgagcacccacaggtccct 418
           ||||||| |||||||||||||| ||||||||
Sbjct: 831 cgtcgtctccggtgagcacccagaggtccct 801



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 166  ttcgcttgccagactcgatctgcggaggatggtcggctgcc 206
            |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 1053 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1013
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>gb|AC118928.13| Mus musculus chromosome 16, clone RP23-416J10, complete sequence
          Length = 238516

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 65     cttcttcttctgtacacttat 85
              |||||||||||||||||||||
Sbjct: 188610 cttcttcttctgtacacttat 188630
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>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 378    tcgatcacgtcgtcgtcgccg 398
              |||||||||||||||||||||
Sbjct: 223026 tcgatcacgtcgtcgtcgccg 223006
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>gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosome 16, complete sequence
          Length = 181697

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 65     cttcttcttctgtacacttat 85
              |||||||||||||||||||||
Sbjct: 168860 cttcttcttctgtacacttat 168840
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 375     gggtcgatcacgtcgtcgtcg 395
               |||||||||||||||||||||
Sbjct: 1343975 gggtcgatcacgtcgtcgtcg 1343995
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>gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, complete sequence
          Length = 248320

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    atgaagctgtggaagtgcct 349
              ||||||||||||||||||||
Sbjct: 222590 atgaagctgtggaagtgcct 222609
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 321      aggctgtcgatgaagctgtggaag 344
                |||||||||||| |||||||||||
Sbjct: 12900182 aggctgtcgatgtagctgtggaag 12900159
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>gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosome 1, complete sequence
          Length = 200595

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 400    tgagcacccacaggtccctg 419
              ||||||||||||||||||||
Sbjct: 168559 tgagcacccacaggtccctg 168540
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>emb|CT010495.9| Mouse DNA sequence from clone RP23-226G14 on chromosome 17, complete
              sequence
          Length = 202526

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 59     caaacacttcttcttctgtacacttatt 86
              ||||||||| ||||| ||||||||||||
Sbjct: 191651 caaacacttattcttatgtacacttatt 191678
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>gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, complete sequence
          Length = 203739

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   tgagcacccacaggtccctg 419
             ||||||||||||||||||||
Sbjct: 34929 tgagcacccacaggtccctg 34910
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>gb|BC043890.1| Xenopus laevis chondromodulin-I precursor, mRNA (cDNA clone
           MGC:53801 IMAGE:5542016), complete cds
          Length = 1434

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 328 cgatgaagctgtggaagtgc 347
           ||||||||||||||||||||
Sbjct: 351 cgatgaagctgtggaagtgc 370
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 373     cggggtcgatcacgtcgtcg 392
               ||||||||||||||||||||
Sbjct: 3549017 cggggtcgatcacgtcgtcg 3548998
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>emb|AL445672.15| Human DNA sequence from clone RP11-66D1 on chromosome 9, complete
             sequence
          Length = 113031

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   cctcacgttctccttctcca 366
             ||||||||||||||||||||
Sbjct: 77755 cctcacgttctccttctcca 77736
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>emb|AL356503.18| Human DNA sequence from clone RP13-159A24 on chromosome Xq27.1-28,
             complete sequence
          Length = 147043

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   aaagccagagcaacaaataa 127
             ||||||||||||||||||||
Sbjct: 12145 aaagccagagcaacaaataa 12126
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 376     ggtcgatcacgtcgtcgtcg 395
               ||||||||||||||||||||
Sbjct: 2378644 ggtcgatcacgtcgtcgtcg 2378625
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>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 317  gggcaggctgtcgatgaagc 336
            ||||||||||||||||||||
Sbjct: 3496 gggcaggctgtcgatgaagc 3515
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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    gggcaggctgtcgatgaagc 336
              ||||||||||||||||||||
Sbjct: 116713 gggcaggctgtcgatgaagc 116732
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>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    gggcaggctgtcgatgaagc 336
              ||||||||||||||||||||
Sbjct: 111837 gggcaggctgtcgatgaagc 111856
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>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 383   cacgtcgtcgtcgccggtgagcac 406
             ||||||||||| ||||||||||||
Sbjct: 27385 cacgtcgtcgtggccggtgagcac 27362
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>emb|AJ620335.1| Oryza sativa (indica cultivar-group) mRNA for E3 ubiquitin ligase
           (ubl gene)
          Length = 762

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 399 gtgagcacccacaggtccct 418
           ||||||||||||||||||||
Sbjct: 629 gtgagcacccacaggtccct 610
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>gb|AC113029.23| Mus musculus chromosome 5, clone RP23-206J17, complete sequence
          Length = 223809

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    atgaagctgtggaagtgcct 349
              ||||||||||||||||||||
Sbjct: 178302 atgaagctgtggaagtgcct 178283
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>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0094H06, from chromosome 3, complete sequence
          Length = 118075

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 321   aggctgtcgatgaagctgtggaag 344
             |||||||||||| |||||||||||
Sbjct: 39327 aggctgtcgatgtagctgtggaag 39350
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete
              genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 385    cgtcgtcgtcgccggtgagc 404
              ||||||||||||||||||||
Sbjct: 446772 cgtcgtcgtcgccggtgagc 446791
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 321      aggctgtcgatgaagctgtggaag 344
                |||||||||||| |||||||||||
Sbjct: 12896945 aggctgtcgatgtagctgtggaag 12896922
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>ref|XM_577795.1| PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC502330), mRNA
          Length = 4653

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 156  cggccccggcttcgcttgcc 175
            ||||||||||||||||||||
Sbjct: 4559 cggccccggcttcgcttgcc 4540
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>gb|AC154423.2| Mus musculus BAC clone RP24-221B7 from 17, complete sequence
          Length = 172011

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 59    caaacacttcttcttctgtacacttatt 86
             ||||||||| ||||| ||||||||||||
Sbjct: 35208 caaacacttattcttatgtacacttatt 35181
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>emb|CT806423.2| Pan troglodytes chromosome X clone CH251-25B01 map Xq28, complete
              sequence
          Length = 220032

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    aaagccagagcaacaaataa 127
              ||||||||||||||||||||
Sbjct: 108625 aaagccagagcaacaaataa 108606
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>gb|AC107776.12| Mus musculus chromosome 17, clone RP23-92G2, complete sequence
          Length = 147077

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 59    caaacacttcttcttctgtacacttatt 86
             ||||||||| ||||| ||||||||||||
Sbjct: 97213 caaacacttattcttatgtacacttatt 97186
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>emb|AJ867287.1| Oryza sativa (indica cultivar-group) mRNA for ubiquitin ligase E3
           (ubl gene)
          Length = 762

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 399 gtgagcacccacaggtccct 418
           ||||||||||||||||||||
Sbjct: 629 gtgagcacccacaggtccct 610


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,775,893
Number of Sequences: 3902068
Number of extensions: 3775893
Number of successful extensions: 65597
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65256
Number of HSP's gapped (non-prelim): 341
length of query: 430
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 408
effective length of database: 17,147,199,772
effective search space: 6996057506976
effective search space used: 6996057506976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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