Clone Name | rbasd20i22 |
---|---|
Clone Library Name | barley_pub |
>gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1119_H02, complete sequence Length = 138584 Score = 52.0 bits (26), Expect = 8e-04 Identities = 49/56 (87%), Gaps = 3/56 (5%) Strand = Plus / Plus Query: 121 aaagagctttatccttccaaaacacccacat---tatctgtcaagactatatagtt 173 ||||||||||||| | |||||||| |||||| ||||||||| |||||||||||| Sbjct: 116205 aaagagctttatcttcccaaaacatccacatcattatctgtcatgactatatagtt 116260
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 52.0 bits (26), Expect = 8e-04 Identities = 49/56 (87%), Gaps = 3/56 (5%) Strand = Plus / Plus Query: 121 aaagagctttatccttccaaaacacccacat---tatctgtcaagactatatagtt 173 ||||||||||||| | |||||||| |||||| ||||||||| |||||||||||| Sbjct: 23912370 aaagagctttatcttcccaaaacatccacatcattatctgtcatgactatatagtt 23912425
>dbj|AK120035.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-C08, full insert sequence Length = 1004 Score = 52.0 bits (26), Expect = 8e-04 Identities = 49/56 (87%), Gaps = 3/56 (5%) Strand = Plus / Minus Query: 121 aaagagctttatccttccaaaacacccacat---tatctgtcaagactatatagtt 173 ||||||||||||| | |||||||| |||||| ||||||||| |||||||||||| Sbjct: 823 aaagagctttatcttcccaaaacatccacatcattatctgtcatgactatatagtt 768
>dbj|AK067029.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092P04, full insert sequence Length = 1294 Score = 52.0 bits (26), Expect = 8e-04 Identities = 49/56 (87%), Gaps = 3/56 (5%) Strand = Plus / Minus Query: 121 aaagagctttatccttccaaaacacccacat---tatctgtcaagactatatagtt 173 ||||||||||||| | |||||||| |||||| ||||||||| |||||||||||| Sbjct: 858 aaagagctttatcttcccaaaacatccacatcattatctgtcatgactatatagtt 803
>dbj|AK061970.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-H06, full insert sequence Length = 976 Score = 52.0 bits (26), Expect = 8e-04 Identities = 49/56 (87%), Gaps = 3/56 (5%) Strand = Plus / Minus Query: 121 aaagagctttatccttccaaaacacccacat---tatctgtcaagactatatagtt 173 ||||||||||||| | |||||||| |||||| ||||||||| |||||||||||| Sbjct: 863 aaagagctttatcttcccaaaacatccacatcattatctgtcatgactatatagtt 808
>dbj|D17760.1|RICARF Oryza sativa (japonica cultivar-group) mRNA for ADP-ribosylation factor, complete cds Length = 1064 Score = 52.0 bits (26), Expect = 8e-04 Identities = 49/56 (87%), Gaps = 3/56 (5%) Strand = Plus / Minus Query: 121 aaagagctttatccttccaaaacacccacat---tatctgtcaagactatatagtt 173 ||||||||||||| | |||||||| |||||| ||||||||| |||||||||||| Sbjct: 845 aaagagctttatcttcccaaaacatccacatcattatctgtcatgactatatagtt 790
>gb|AC025821.7| Homo sapiens BAC clone RP11-472F4 from 4, complete sequence Length = 178378 Score = 42.1 bits (21), Expect = 0.81 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 tcacaaagagctttatccttc 137 ||||||||||||||||||||| Sbjct: 5321 tcacaaagagctttatccttc 5341
>gb|AC167250.2| Mus musculus BAC clone RP23-69D2 from chromosome 9, complete sequence Length = 221255 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 aaagagctttatccttccaaaaca 144 |||||||||| ||||||||||||| Sbjct: 110226 aaagagctttttccttccaaaaca 110203
>gb|AC121891.2| Mus musculus BAC clone RP24-155I9 from 8, complete sequence Length = 165890 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ggagtggctgagtacagagc 33 |||||||||||||||||||| Sbjct: 164419 ggagtggctgagtacagagc 164438
>gb|AC160937.1| Mus musculus BAC clone RP23-123M3 from chromosome 8, complete sequence Length = 212654 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ggagtggctgagtacagagc 33 |||||||||||||||||||| Sbjct: 59844 ggagtggctgagtacagagc 59863
>gb|AC024579.5| Homo sapiens chromosome 5 clone CTD-2582M21, complete sequence Length = 149870 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 124 gagctttatccttccaaaacaccc 147 |||||||||||||||||| ||||| Sbjct: 135873 gagctttatccttccaaatcaccc 135850
>gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, complete sequence Length = 133790 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 gagctttatccttccaaaacaccc 147 |||||||||||||||||| ||||| Sbjct: 111557 gagctttatccttccaaatcaccc 111580
>gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5, complete sequence Length = 203043 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 124 gagctttatccttccaaaacaccc 147 |||||||||||||||||| ||||| Sbjct: 23533 gagctttatccttccaaatcaccc 23510
>emb|AL672054.5| Mouse DNA sequence from clone RP23-237I22 on chromosome X, complete sequence Length = 187770 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 caaagagctttatccttcca 139 |||||||||||||||||||| Sbjct: 12975 caaagagctttatccttcca 12994 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,472,783 Number of Sequences: 3902068 Number of extensions: 1472783 Number of successful extensions: 22416 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22378 Number of HSP's gapped (non-prelim): 32 length of query: 248 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 226 effective length of database: 17,147,199,772 effective search space: 3875267148472 effective search space used: 3875267148472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)