ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20i22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome... 52 8e-04
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 52 8e-04
3dbj|AK120035.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
4dbj|AK067029.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
5dbj|AK061970.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
6dbj|D17760.1|RICARF Oryza sativa (japonica cultivar-group) mRNA ... 52 8e-04
7gb|AC025821.7| Homo sapiens BAC clone RP11-472F4 from 4, complet... 42 0.81
8gb|AC167250.2| Mus musculus BAC clone RP23-69D2 from chromosome ... 40 3.2
9gb|AC121891.2| Mus musculus BAC clone RP24-155I9 from 8, complet... 40 3.2
10gb|AC160937.1| Mus musculus BAC clone RP23-123M3 from chromosome... 40 3.2
11gb|AC024579.5| Homo sapiens chromosome 5 clone CTD-2582M21, comp... 40 3.2
12gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, comple... 40 3.2
13gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5,... 40 3.2
14emb|AL672054.5| Mouse DNA sequence from clone RP23-237I22 on chr... 40 3.2

>gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1119_H02,
              complete sequence
          Length = 138584

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 49/56 (87%), Gaps = 3/56 (5%)
 Strand = Plus / Plus

                                                                      
Query: 121    aaagagctttatccttccaaaacacccacat---tatctgtcaagactatatagtt 173
              ||||||||||||| | |||||||| ||||||   ||||||||| ||||||||||||
Sbjct: 116205 aaagagctttatcttcccaaaacatccacatcattatctgtcatgactatatagtt 116260



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 49/56 (87%), Gaps = 3/56 (5%)
 Strand = Plus / Plus

                                                                        
Query: 121      aaagagctttatccttccaaaacacccacat---tatctgtcaagactatatagtt 173
                ||||||||||||| | |||||||| ||||||   ||||||||| ||||||||||||
Sbjct: 23912370 aaagagctttatcttcccaaaacatccacatcattatctgtcatgactatatagtt 23912425



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>dbj|AK120035.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-C08, full
           insert sequence
          Length = 1004

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 49/56 (87%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                   
Query: 121 aaagagctttatccttccaaaacacccacat---tatctgtcaagactatatagtt 173
           ||||||||||||| | |||||||| ||||||   ||||||||| ||||||||||||
Sbjct: 823 aaagagctttatcttcccaaaacatccacatcattatctgtcatgactatatagtt 768



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>dbj|AK067029.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092P04, full
           insert sequence
          Length = 1294

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 49/56 (87%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                   
Query: 121 aaagagctttatccttccaaaacacccacat---tatctgtcaagactatatagtt 173
           ||||||||||||| | |||||||| ||||||   ||||||||| ||||||||||||
Sbjct: 858 aaagagctttatcttcccaaaacatccacatcattatctgtcatgactatatagtt 803



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>dbj|AK061970.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-H06, full
           insert sequence
          Length = 976

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 49/56 (87%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                   
Query: 121 aaagagctttatccttccaaaacacccacat---tatctgtcaagactatatagtt 173
           ||||||||||||| | |||||||| ||||||   ||||||||| ||||||||||||
Sbjct: 863 aaagagctttatcttcccaaaacatccacatcattatctgtcatgactatatagtt 808



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>dbj|D17760.1|RICARF Oryza sativa (japonica cultivar-group) mRNA for ADP-ribosylation
           factor, complete cds
          Length = 1064

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 49/56 (87%), Gaps = 3/56 (5%)
 Strand = Plus / Minus

                                                                   
Query: 121 aaagagctttatccttccaaaacacccacat---tatctgtcaagactatatagtt 173
           ||||||||||||| | |||||||| ||||||   ||||||||| ||||||||||||
Sbjct: 845 aaagagctttatcttcccaaaacatccacatcattatctgtcatgactatatagtt 790



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>gb|AC025821.7| Homo sapiens BAC clone RP11-472F4 from 4, complete sequence
          Length = 178378

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 117  tcacaaagagctttatccttc 137
            |||||||||||||||||||||
Sbjct: 5321 tcacaaagagctttatccttc 5341



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>gb|AC167250.2| Mus musculus BAC clone RP23-69D2 from chromosome 9, complete sequence
          Length = 221255

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 121    aaagagctttatccttccaaaaca 144
              |||||||||| |||||||||||||
Sbjct: 110226 aaagagctttttccttccaaaaca 110203



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>gb|AC121891.2| Mus musculus BAC clone RP24-155I9 from 8, complete sequence
          Length = 165890

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     ggagtggctgagtacagagc 33
              ||||||||||||||||||||
Sbjct: 164419 ggagtggctgagtacagagc 164438



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>gb|AC160937.1| Mus musculus BAC clone RP23-123M3 from chromosome 8, complete sequence
          Length = 212654

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    ggagtggctgagtacagagc 33
             ||||||||||||||||||||
Sbjct: 59844 ggagtggctgagtacagagc 59863



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>gb|AC024579.5| Homo sapiens chromosome 5 clone CTD-2582M21, complete sequence
          Length = 149870

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 124    gagctttatccttccaaaacaccc 147
              |||||||||||||||||| |||||
Sbjct: 135873 gagctttatccttccaaatcaccc 135850



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>gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, complete sequence
          Length = 133790

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 124    gagctttatccttccaaaacaccc 147
              |||||||||||||||||| |||||
Sbjct: 111557 gagctttatccttccaaatcaccc 111580



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>gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5, complete sequence
          Length = 203043

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 124   gagctttatccttccaaaacaccc 147
             |||||||||||||||||| |||||
Sbjct: 23533 gagctttatccttccaaatcaccc 23510



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>emb|AL672054.5| Mouse DNA sequence from clone RP23-237I22 on chromosome X, complete
             sequence
          Length = 187770

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   caaagagctttatccttcca 139
             ||||||||||||||||||||
Sbjct: 12975 caaagagctttatccttcca 12994


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,472,783
Number of Sequences: 3902068
Number of extensions: 1472783
Number of successful extensions: 22416
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22378
Number of HSP's gapped (non-prelim): 32
length of query: 248
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 226
effective length of database: 17,147,199,772
effective search space: 3875267148472
effective search space used: 3875267148472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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