ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20i20 |
|---|---|
| Clone Library Name | barley_pub |
>MTHR_ORYSA (Q75HE6) Probable methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 594 Score = 159 bits (401), Expect = 2e-39 Identities = 74/84 (88%), Positives = 81/84 (96%) Frame = -3 Query: 316 AVNAVTWGVFXGKEIIQPTVVDSASFMVWKDXAFEIWSRGWACLFPEGDSSRELLEQVQK 137 AVNAVTWGVF GKEI+QPTVVDSASFMVWKD AFEIWS+GWACLFPEGDSSRE+L++VQK Sbjct: 511 AVNAVTWGVFPGKEIVQPTVVDSASFMVWKDEAFEIWSKGWACLFPEGDSSREILDKVQK 570 Query: 136 TYCLVSLVDNDYISGDLFAAFKEI 65 +Y LVSLVDNDYI+GDLFAAFKEI Sbjct: 571 SYFLVSLVDNDYINGDLFAAFKEI 594
>MTHR1_MAIZE (Q9SE94) Methylenetetrahydrofolate reductase 1 (EC 1.5.1.20)| (ZmMTHFR1) Length = 593 Score = 154 bits (389), Expect = 5e-38 Identities = 72/82 (87%), Positives = 76/82 (92%) Frame = -3 Query: 316 AVNAVTWGVFXGKEIIQPTVVDSASFMVWKDXAFEIWSRGWACLFPEGDSSRELLEQVQK 137 AVNAVTWGVF GKEIIQPTVVD ASFMVWKD AFEIW+RGW C+FPEGDSSRELLE+VQK Sbjct: 511 AVNAVTWGVFPGKEIIQPTVVDHASFMVWKDEAFEIWTRGWGCMFPEGDSSRELLEKVQK 570 Query: 136 TYCLVSLVDNDYISGDLFAAFK 71 TY LVSLVDNDY+ GDLFAAFK Sbjct: 571 TYYLVSLVDNDYVQGDLFAAFK 592
>MTHR2_ARATH (O80585) Methylenetetrahydrofolate reductase 2 (EC 1.5.1.20)| (AtMTHFR2) Length = 594 Score = 126 bits (316), Expect = 2e-29 Identities = 58/83 (69%), Positives = 68/83 (81%) Frame = -3 Query: 313 VNAVTWGVFXGKEIIQPTVVDSASFMVWKDXAFEIWSRGWACLFPEGDSSRELLEQVQKT 134 VNAVTWGVF KEIIQPT+VD ASF VWKD AFE WSR WA L+PE D SR LLE+V+ + Sbjct: 512 VNAVTWGVFPAKEIIQPTIVDPASFNVWKDEAFETWSRSWANLYPEADPSRNLLEEVKNS 571 Query: 133 YCLVSLVDNDYISGDLFAAFKEI 65 Y LVSLV+NDYI+GD+FA F ++ Sbjct: 572 YYLVSLVENDYINGDIFAVFADL 594
>MTHR1_ARATH (Q9SE60) Methylenetetrahydrofolate reductase 1 (EC 1.5.1.20)| (AtMTHFR1) Length = 592 Score = 125 bits (314), Expect = 3e-29 Identities = 57/80 (71%), Positives = 68/80 (85%) Frame = -3 Query: 313 VNAVTWGVFXGKEIIQPTVVDSASFMVWKDXAFEIWSRGWACLFPEGDSSRELLEQVQKT 134 VNAVTWGVF KE+IQPT+VD ASF VWKD AFEIWSR WA L+PE D SR+LLE+V+ + Sbjct: 512 VNAVTWGVFPAKEVIQPTIVDPASFKVWKDEAFEIWSRSWANLYPEDDPSRKLLEEVKNS 571 Query: 133 YCLVSLVDNDYISGDLFAAF 74 Y LVSLVDN+YI+GD+F+ F Sbjct: 572 YYLVSLVDNNYINGDIFSVF 591
>MTHR_HUMAN (P42898) Methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 656 Score = 89.7 bits (221), Expect = 2e-18 Identities = 39/70 (55%), Positives = 49/70 (70%) Frame = -3 Query: 310 NAVTWGVFXGKEIIQPTVVDSASFMVWKDXAFEIWSRGWACLFPEGDSSRELLEQVQKTY 131 NAVTWG+F G+EIIQPTVVD SFM WKD AF +W W L+ E SR +++ + Y Sbjct: 557 NAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNY 616 Query: 130 CLVSLVDNDY 101 LV+LVDND+ Sbjct: 617 FLVNLVDNDF 626
>MTHR_MACFA (Q60HE5) Methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 656 Score = 89.4 bits (220), Expect = 2e-18 Identities = 39/70 (55%), Positives = 49/70 (70%) Frame = -3 Query: 310 NAVTWGVFXGKEIIQPTVVDSASFMVWKDXAFEIWSRGWACLFPEGDSSRELLEQVQKTY 131 NAVTWG+F G+EIIQPTVVD SFM WKD AF +W W L+ E SR +++ + Y Sbjct: 557 NAVTWGIFPGREIIQPTVVDPISFMFWKDEAFALWIEQWGKLYEEESPSRTIIQYIHDNY 616 Query: 130 CLVSLVDNDY 101 LV+LVDND+ Sbjct: 617 FLVNLVDNDF 626
>MTHR_MOUSE (Q9WU20) Methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 654 Score = 87.4 bits (215), Expect = 8e-18 Identities = 38/70 (54%), Positives = 49/70 (70%) Frame = -3 Query: 310 NAVTWGVFXGKEIIQPTVVDSASFMVWKDXAFEIWSRGWACLFPEGDSSRELLEQVQKTY 131 NAVTWG+F G+EIIQPTVVD SFM WKD AF +W W L+ E SR +++ + Y Sbjct: 556 NAVTWGIFPGREIIQPTVVDPISFMFWKDEAFALWIEQWGKLYEEESPSRMIIQYIHDNY 615 Query: 130 CLVSLVDNDY 101 LV+LVDN++ Sbjct: 616 FLVNLVDNEF 625
>MTHR_CAEEL (Q17693) Probable methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 663 Score = 75.9 bits (185), Expect = 2e-14 Identities = 33/69 (47%), Positives = 45/69 (65%) Frame = -3 Query: 307 AVTWGVFXGKEIIQPTVVDSASFMVWKDXAFEIWSRGWACLFPEGDSSRELLEQVQKTYC 128 AVTWGVF G EI QPTVVD SF W+D A+++W W +P+ S +++ V + Sbjct: 576 AVTWGVFPGSEIAQPTVVDPLSFRAWRDEAYQMWMAQWGDFYPKESKSYGVIKAVHDEFR 635 Query: 127 LVSLVDNDY 101 LV+LVDND+ Sbjct: 636 LVTLVDNDF 644
>MTHR1_SCHPO (Q10258) Methylenetetrahydrofolate reductase 1 (EC 1.5.1.20)| Length = 603 Score = 74.7 bits (182), Expect = 5e-14 Identities = 38/83 (45%), Positives = 53/83 (63%), Gaps = 1/83 (1%) Frame = -3 Query: 310 NAVTWGVFXGKEIIQPTVVDSASFMVWKDXAFEIWSRGWACLFPEGDSSRELLEQVQKTY 131 NAVTWGVF +EIIQPT+V+S SF+ WKD A+ + WA + SR+LL + K + Sbjct: 506 NAVTWGVFPNREIIQPTIVESTSFLAWKDEAYSL-GMEWANAYSPDSISRKLLVSMMKEW 564 Query: 130 CLVSLVDNDYISG-DLFAAFKEI 65 L +VDND+ +G LF F ++ Sbjct: 565 FLCVIVDNDFQNGQSLFDVFNKM 587
>MTHR1_YEAST (P46151) Methylenetetrahydrofolate reductase 1 (EC 1.5.1.20)| Length = 657 Score = 72.8 bits (177), Expect = 2e-13 Identities = 34/74 (45%), Positives = 44/74 (59%) Frame = -3 Query: 310 NAVTWGVFXGKEIIQPTVVDSASFMVWKDXAFEIWSRGWACLFPEGDSSRELLEQVQKTY 131 + VTWGVF + Q T+++ SF W+D AF IWS WA LFP + LL V K Y Sbjct: 575 SVVTWGVFPNSPVKQTTIIEEESFKAWRDEAFSIWSE-WAKLFPRNTPANILLRLVHKDY 633 Query: 130 CLVSLVDNDYISGD 89 CLVS+V +D+ D Sbjct: 634 CLVSIVHHDFKETD 647
>MTHR2_YEAST (P53128) Methylenetetrahydrofolate reductase 2 (EC 1.5.1.20)| Length = 599 Score = 72.4 bits (176), Expect = 3e-13 Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 2/76 (2%) Frame = -3 Query: 310 NAVTWGVFXGKEIIQPTVVDSASFMVWKDXAFEIWSRGWACLFPEGDS--SRELLEQVQK 137 NAVTWG+F G+EI+QPT+V+ SF+ WK+ + I + W + D S + ++ + Sbjct: 515 NAVTWGIFPGREILQPTIVEKISFLAWKEEFYHILNE-WKLNMNKYDKPHSAQFIQSLID 573 Query: 136 TYCLVSLVDNDYISGD 89 YCLV++VDNDYIS D Sbjct: 574 DYCLVNIVDNDYISPD 589
>MTHR2_SCHPO (O74927) Methylenetetrahydrofolate reductase 2 (EC 1.5.1.20)| Length = 641 Score = 63.2 bits (152), Expect = 2e-10 Identities = 28/71 (39%), Positives = 45/71 (63%) Frame = -3 Query: 310 NAVTWGVFXGKEIIQPTVVDSASFMVWKDXAFEIWSRGWACLFPEGDSSRELLEQVQKTY 131 +AVTWGV+ G+EIIQ T++ SF W +F++W WA L+ + SR+LLE Sbjct: 559 SAVTWGVYPGREIIQSTIIAEVSFKAWLSESFQVWGE-WANLYSKNTPSRKLLENCINDR 617 Query: 130 CLVSLVDNDYI 98 LV+++ +D++ Sbjct: 618 WLVTVIHHDFM 628
>PROS_RABIT (P98118) Vitamin K-dependent protein S precursor (Fragment)| Length = 646 Score = 32.3 bits (72), Expect = 0.31 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -3 Query: 202 RGWACLFPEGDSSRELLEQVQKTYCLVSLVDNDYISGDLFAAF 74 RGW + +E+++Q QK +CLV++ Y G A F Sbjct: 422 RGWNLMKQGASGVKEIIQQKQKKHCLVTVEKGSYYPGSGIAQF 464
>YB1C_SCHPO (P87177) Hypothetical WD-repeat protein C3D6.12 in chromosome II| Length = 922 Score = 30.4 bits (67), Expect = 1.2 Identities = 21/62 (33%), Positives = 31/62 (50%) Frame = -3 Query: 271 IQPTVVDSASFMVWKDXAFEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSLVDNDYISG 92 + PT V S S D + +W +G +F E + REL EQ + T LVS +N G Sbjct: 668 VGPTFVVSGSH----DHSIRLWEQGDDLVFLEEERERELEEQYEST--LVSSYENAEADG 721 Query: 91 DL 86 ++ Sbjct: 722 EV 723
>XYLA_STRLI (Q9RFM4) Xylose isomerase (EC 5.3.1.5)| Length = 395 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -3 Query: 217 FEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSL 116 F +W+ GW L P GD++RE L+ + L L Sbjct: 13 FGLWTVGWQGLDPFGDATREALDPAESVRRLSQL 46
>XYLA_ARTS7 (P12070) Xylose isomerase (EC 5.3.1.5)| Length = 394 Score = 28.9 bits (63), Expect = 3.4 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 7/75 (9%) Frame = -3 Query: 271 IQPTVVDSASFMVWKDXAFEIWSRGWACLFPEGDSSRELLEQVQKTYCL-------VSLV 113 +QPT D +F +W+ GW P G ++R+ L+ V+ + L ++ Sbjct: 2 VQPTPADHFTF--------GLWTVGWTGADPFGVATRKNLDPVEAVHKLAELGAYGITFH 53 Query: 112 DNDYISGDLFAAFKE 68 DND I D A +E Sbjct: 54 DNDLIPFDATEAERE 68
>DXR_LEIXX (Q6AEY1) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 361 Score = 27.7 bits (60), Expect = 7.6 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +1 Query: 148 ALATPWMSHPPGTGRPIPWTR 210 +L W PGTG P+ WTR Sbjct: 247 SLGLGWPDRVPGTGLPLDWTR 267
>EMID1_HUMAN (Q96A84) EMI domain-containing protein 1 precursor (Protein Emu1)| (Emilin and multimerin domain-containing protein 1) Length = 441 Score = 27.7 bits (60), Expect = 7.6 Identities = 17/40 (42%), Positives = 19/40 (47%) Frame = +1 Query: 76 MQQRGPR*CSHCPQG*PGNRSSAPALATPWMSHPPGTGRP 195 M RGP PQG PG+ A A+ TP PPG P Sbjct: 217 MGMRGPP----GPQGPPGSPGRAGAVGTPGERGPPGPPGP 252
>PROS_BOVIN (P07224) Vitamin K-dependent protein S precursor| Length = 675 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/43 (27%), Positives = 21/43 (48%) Frame = -3 Query: 202 RGWACLFPEGDSSRELLEQVQKTYCLVSLVDNDYISGDLFAAF 74 RGW + +E++++ Q +CLV++ Y G A F Sbjct: 451 RGWNLMNQGTSGVKEIIQEKQNKHCLVNVEKGSYYPGTGVAQF 493
>ILVD_HELHP (Q7VHW3) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 572 Score = 27.7 bits (60), Expect = 7.6 Identities = 18/73 (24%), Positives = 30/73 (41%) Frame = +2 Query: 14 YRILTKGGQTLKISSKLDLLECSKEVPADVVIVHKADQAIGXXXXXXXXPG*VTLREQAG 193 Y L + G LK+++ + E KE V + ++AI G V + G Sbjct: 394 YGNLAREGAVLKVAA---VAESMKEFEGSAVCFNSQEEAIKGIAGGKVKAGNVVVIRYEG 450 Query: 194 PSPGPDLKRXIFP 232 P GP ++ + P Sbjct: 451 PKGGPGMQEMLTP 463
>XYLA_STROI (Q93RJ9) Xylose isomerase (EC 5.3.1.5)| Length = 388 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -3 Query: 217 FEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSL 116 F +W+ GW P GD++R L+ V+ L L Sbjct: 13 FGLWTVGWQGRDPFGDATRRALDPVETVQRLAEL 46
>XYLA_STRCK (Q9S3Z4) Xylose isomerase (EC 5.3.1.5)| Length = 388 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -3 Query: 217 FEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSL 116 F +W+ GW P GD++R L+ V+ L L Sbjct: 13 FGLWTVGWQGRDPFGDATRRALDPVETVQRLAEL 46
>XYLA_STRAW (Q93HF3) Xylose isomerase (EC 5.3.1.5)| Length = 388 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -3 Query: 217 FEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSL 116 F +W+ GW P GD++R L+ V+ L L Sbjct: 13 FGLWTVGWQGRDPFGDATRRALDPVETVQRLAGL 46
>XYLA_STRRU (P24300) Xylose isomerase (EC 5.3.1.5)| Length = 387 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -3 Query: 217 FEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSL 116 F +W+ GW P GD++R L+ V+ L L Sbjct: 12 FGLWTVGWQGRDPFGDATRRALDPVESVRRLAEL 45
>IKBL_RAT (Q8R2H1) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 381 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = +1 Query: 127 GNRSSAPALATPWMSHPPGTGRPIPW 204 G+R AP A P HP G GR W Sbjct: 270 GDRGPAPPRARPRAEHPRGAGRGSLW 295
>IE18_PRVIF (P11675) Immediate-early protein IE180| Length = 1461 Score = 27.3 bits (59), Expect = 9.9 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = +2 Query: 188 AGPSPGPDLKRXIFPNHEARRVNDGRLDDLLAGEHAPSDSVHG 316 AGP P P+ ++ ARR DG D+ L+G D HG Sbjct: 886 AGPDPAPERRKKKRRAPGARRPGDGEEDEGLSGSALRGDG-HG 927
>ILVD_CORJK (Q4JUN3) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 615 Score = 27.3 bits (59), Expect = 9.9 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 12/83 (14%) Frame = +2 Query: 104 VIVHKADQAIGXXXXXXXXPG*VTLREQAGPSPGPDLKRXIFP---------NHEARRVN 256 ++V ++A+ PG V + GP+ GP ++ + P E + Sbjct: 457 LVVESQEEAVRVILDKKVKPGHVVVVRYEGPAGGPGMQEMLHPTAFLKGAGLGKECALIT 516 Query: 257 DGRLDDLLAG---EHAPSDSVHG 316 DGR +G H ++ HG Sbjct: 517 DGRFSGGTSGLSVGHISPEAAHG 539 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,332,108 Number of Sequences: 219361 Number of extensions: 903675 Number of successful extensions: 2326 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2261 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2322 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
