ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20i20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009403.1| Triticum aestivum clone wlm96.pk047.l4:fis, full ... 408 e-111
2ref|XM_470089.1| Oryza sativa (japonica cultivar-group), mRNA 133 4e-28
3dbj|AK121351.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 4e-28
4dbj|AK099527.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 4e-28
5dbj|AK062082.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 4e-28
6gb|AF174486.1|AF174486 Zea mays methylenetetrahydrofolate reduct... 123 4e-25
7gb|AY109096.1| Zea mays PCO119715 mRNA sequence 123 4e-25
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 94 3e-16
9gb|AC135594.4| Oryza sativa chromosome 3 BAC OSJNBa0024F18 genom... 94 3e-16
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
11gb|BT019001.1| Zea mays clone Contig489.F mRNA sequence 68 2e-08
12ref|XM_362588.1| Magnaporthe grisea 70-15 hypothetical protein (... 50 0.004
13dbj|AK058876.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
14gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chr... 48 0.017
15ref|XM_568023.1| Cryptococcus neoformans var. neoformans JEC21 m... 48 0.017
16gb|AC140347.3| Mus musculus BAC clone RP23-233K3 from chromosome... 44 0.27
17gb|AC154911.4| Mus musculus BAC clone RP23-25I3 from chromosome ... 44 0.27
18ref|XM_953671.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.2
19ref|XM_329903.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.2
20emb|AL450267.10| Human DNA sequence from clone RP11-344B23 on ch... 40 4.2
21emb|BX842620.1| Neurospora crassa DNA linkage group V BAC contig... 40 4.2
22gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 4.2
23gb|AC153616.8| Mus musculus 6 BAC RP23-328I7 (Roswell Park Cance... 40 4.2
24gb|AC115003.18| Mus musculus chromosome 6, clone RP24-179P9, com... 40 4.2

>gb|BT009403.1| Triticum aestivum clone wlm96.pk047.l4:fis, full insert mRNA sequence
          Length = 1653

 Score =  408 bits (206), Expect = e-111
 Identities = 296/326 (90%), Gaps = 8/326 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    cgacagatcgtattacaggattctaacgaagggcggtcaaac-------act-taagata 52
            ||||| ||| |||||||||| |||| ||||||||||||||||       ||| |||| | 
Sbjct: 1476 cgacaaatcatattacaggactctagcgaagggcggtcaaacgcagcatactgtaaggtc 1417

                                                                        
Query: 53   tcatcgaaattagatctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtc 112
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1416 tcatcgaaattagatctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtc 1357

                                                                        
Query: 113  cacaaggctgaccaggcaataggtcttctgcacctgctctagcaactccctggatgagtc 172
            ||| |||||||||| | ||||| ||||||| | ||||||||||||||||||||| |||||
Sbjct: 1356 cacgaggctgaccaagtaatagctcttctgaatctgctctagcaactccctggacgagtc 1297

                                                                        
Query: 173  accctccgggaacaggcaggcccatcccctggaccagatctcaaacgcttnatctttcca 232
             ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1296 gccctctgggaacaggcaggcccatcccctggaccagatctcaaacgcttcatctttcca 1237

                                                                        
Query: 233  aaccatgaagctcgccgagtcaacgacggtaggctggatgatctccttgccggngaacac 292
             |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1236 gaccatgaagctcgctgagtcaacgacggtaggctggatgatctccttgccggggaacac 1177

                                      
Query: 293  gccccaagtgacagcgttcacggcgt 318
             ||||| |||||||| ||||||||||
Sbjct: 1176 accccatgtgacagcattcacggcgt 1151



to top

>ref|XM_470089.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2167

 Score =  133 bits (67), Expect = 4e-28
 Identities = 206/253 (81%)
 Strand = Plus / Minus

                                                                        
Query: 66   atctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgacc 125
            ||||||||||| || || ||||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 1847 atctccttgaacgccgcgaagagatcaccgttgatgtagtcgttgtccacaagactaacc 1788

                                                                        
Query: 126  aggcaataggtcttctgcacctgctctagcaactccctggatgagtcaccctccgggaac 185
            | | | ||| ||||||| ||||  ||||| | |||||| |||||||| ||||| ||||||
Sbjct: 1787 aagaagtagctcttctggaccttgtctagtatctccctagatgagtcgccctcagggaac 1728

                                                                        
Query: 186  aggcaggcccatcccctggaccagatctcaaacgcttnatctttccaaaccatgaagctc 245
            ||||| ||||| ||| | ||||| || || || ||||  |||||||||||||| ||||| 
Sbjct: 1727 aggcaagcccaaccctttgaccaaatttcgaaagcttcgtctttccaaaccataaagctg 1668

                                                                        
Query: 246  gccgagtcaacgacggtaggctggatgatctccttgccggngaacacgccccaagtgaca 305
            || ||||||||||| || |||||||  || |||||||| | ||| || ||||| ||||| 
Sbjct: 1667 gctgagtcaacgacagttggctggactatttccttgccagggaaaacaccccatgtgacc 1608

                         
Query: 306  gcgttcacggcgt 318
            || ||||| ||||
Sbjct: 1607 gcattcacagcgt 1595



to top

>dbj|AK121351.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121O06, full
            insert sequence
          Length = 2169

 Score =  133 bits (67), Expect = 4e-28
 Identities = 206/253 (81%)
 Strand = Plus / Minus

                                                                        
Query: 66   atctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgacc 125
            ||||||||||| || || ||||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 1849 atctccttgaacgccgcgaagagatcaccgttgatgtagtcgttgtccacaagactaacc 1790

                                                                        
Query: 126  aggcaataggtcttctgcacctgctctagcaactccctggatgagtcaccctccgggaac 185
            | | | ||| ||||||| ||||  ||||| | |||||| |||||||| ||||| ||||||
Sbjct: 1789 aagaagtagctcttctggaccttgtctagtatctccctagatgagtcgccctcagggaac 1730

                                                                        
Query: 186  aggcaggcccatcccctggaccagatctcaaacgcttnatctttccaaaccatgaagctc 245
            ||||| ||||| ||| | ||||| || || || ||||  |||||||||||||| ||||| 
Sbjct: 1729 aggcaagcccaaccctttgaccaaatttcgaaagcttcgtctttccaaaccataaagctg 1670

                                                                        
Query: 246  gccgagtcaacgacggtaggctggatgatctccttgccggngaacacgccccaagtgaca 305
            || ||||||||||| || |||||||  || |||||||| | ||| || ||||| ||||| 
Sbjct: 1669 gctgagtcaacgacagttggctggactatttccttgccagggaaaacaccccatgtgacc 1610

                         
Query: 306  gcgttcacggcgt 318
            || ||||| ||||
Sbjct: 1609 gcattcacagcgt 1597



to top

>dbj|AK099527.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031C07, full
           insert sequence
          Length = 1119

 Score =  133 bits (67), Expect = 4e-28
 Identities = 206/253 (81%)
 Strand = Plus / Minus

                                                                       
Query: 66  atctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgacc 125
           ||||||||||| || || ||||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 909 atctccttgaacgccgcgaagagatcaccgttgatgtagtcgttgtccacaagactaacc 850

                                                                       
Query: 126 aggcaataggtcttctgcacctgctctagcaactccctggatgagtcaccctccgggaac 185
           | | | ||| ||||||| ||||  ||||| | |||||| |||||||| ||||| ||||||
Sbjct: 849 aagaagtagctcttctggaccttgtctagtatctccctagatgagtcgccctcagggaac 790

                                                                       
Query: 186 aggcaggcccatcccctggaccagatctcaaacgcttnatctttccaaaccatgaagctc 245
           ||||| ||||| ||| | ||||| || || || ||||  |||||||||||||| ||||| 
Sbjct: 789 aggcaagcccaaccctttgaccaaatttcgaaagcttcgtctttccaaaccataaagctg 730

                                                                       
Query: 246 gccgagtcaacgacggtaggctggatgatctccttgccggngaacacgccccaagtgaca 305
           || ||||||||||| || |||||||  || |||||||| | ||| || ||||| ||||| 
Sbjct: 729 gctgagtcaacgacagttggctggactatttccttgccagggaaaacaccccatgtgacc 670

                        
Query: 306 gcgttcacggcgt 318
           || ||||| ||||
Sbjct: 669 gcattcacagcgt 657



to top

>dbj|AK062082.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-F11, full
           insert sequence
          Length = 968

 Score =  133 bits (67), Expect = 4e-28
 Identities = 206/253 (81%)
 Strand = Plus / Minus

                                                                       
Query: 66  atctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgacc 125
           ||||||||||| || || ||||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 763 atctccttgaacgccgcgaagagatcaccgttgatgtagtcgttgtccacaagactaacc 704

                                                                       
Query: 126 aggcaataggtcttctgcacctgctctagcaactccctggatgagtcaccctccgggaac 185
           | | | ||| ||||||| ||||  ||||| | |||||| |||||||| ||||| ||||||
Sbjct: 703 aagaagtagctcttctggaccttgtctagtatctccctagatgagtcgccctcagggaac 644

                                                                       
Query: 186 aggcaggcccatcccctggaccagatctcaaacgcttnatctttccaaaccatgaagctc 245
           ||||| ||||| ||| | ||||| || || || ||||  |||||||||||||| ||||| 
Sbjct: 643 aggcaagcccaaccctttgaccaaatttcgaaagcttcgtctttccaaaccataaagctg 584

                                                                       
Query: 246 gccgagtcaacgacggtaggctggatgatctccttgccggngaacacgccccaagtgaca 305
           || ||||||||||| || |||||||  || |||||||| | ||| || ||||| ||||| 
Sbjct: 583 gctgagtcaacgacagttggctggactatttccttgccagggaaaacaccccatgtgacc 524

                        
Query: 306 gcgttcacggcgt 318
           || ||||| ||||
Sbjct: 523 gcattcacagcgt 511



to top

>gb|AF174486.1|AF174486 Zea mays methylenetetrahydrofolate reductase mRNA, complete cds
          Length = 2225

 Score =  123 bits (62), Expect = 4e-25
 Identities = 201/248 (81%)
 Strand = Plus / Minus

                                                                        
Query: 71   cttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgaccaggca 130
            |||||| |||||||| ||||||||   || |||||| ||||| || |||||||||||| |
Sbjct: 1852 cttgaaggcagcaaacaggtccccctggacgtagtcgttgtcaacgaggctgaccaggta 1793

                                                                        
Query: 131  ataggtcttctgcacctgctctagcaactccctggatgagtcaccctccgggaacaggca 190
             ||||||||||| |||| |||||| | |||||| ||||| |||||||| ||||||| |||
Sbjct: 1792 gtaggtcttctgaaccttctctagtagctccctcgatgaatcaccctcagggaacatgca 1733

                                                                        
Query: 191  ggcccatcccctggaccagatctcaaacgcttnatctttccaaaccatgaagctcgccga 250
              |||| ||||  | |||||| ||||| ||||  || ||||||||||| || || ||   
Sbjct: 1732 accccacccccgagtccagatttcaaatgcttcgtccttccaaaccataaaacttgcatg 1673

                                                                        
Query: 251  gtcaacgacggtaggctggatgatctccttgccggngaacacgccccaagtgacagcgtt 310
             || || || ||||||||||| ||||||||||| | ||| || ||||| |||||||| ||
Sbjct: 1672 atccacaaccgtaggctggataatctccttgccagggaaaacaccccacgtgacagcatt 1613

                    
Query: 311  cacggcgt 318
            ||||||||
Sbjct: 1612 cacggcgt 1605



to top

>gb|AY109096.1| Zea mays PCO119715 mRNA sequence
          Length = 2423

 Score =  123 bits (62), Expect = 4e-25
 Identities = 201/248 (81%)
 Strand = Plus / Minus

                                                                        
Query: 71   cttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgaccaggca 130
            |||||| |||||||| ||||||||   || |||||| ||||| || |||||||||||| |
Sbjct: 1835 cttgaaggcagcaaacaggtccccctggacgtagtcgttgtcaacgaggctgaccaggta 1776

                                                                        
Query: 131  ataggtcttctgcacctgctctagcaactccctggatgagtcaccctccgggaacaggca 190
             ||||||||||| |||| |||||| | |||||| ||||| |||||||| ||||||| |||
Sbjct: 1775 gtaggtcttctgaaccttctctagtagctccctcgatgaatcaccctcagggaacatgca 1716

                                                                        
Query: 191  ggcccatcccctggaccagatctcaaacgcttnatctttccaaaccatgaagctcgccga 250
              |||| ||||  | |||||| ||||| ||||  || ||||||||||| || || ||   
Sbjct: 1715 accccacccccgagtccagatttcaaatgcttcgtccttccaaaccataaaacttgcatg 1656

                                                                        
Query: 251  gtcaacgacggtaggctggatgatctccttgccggngaacacgccccaagtgacagcgtt 310
             || || || ||||||||||| ||||||||||| | ||| || ||||| |||||||| ||
Sbjct: 1655 atccacaaccgtaggctggataatctccttgccagggaaaacaccccacgtgacagcatt 1596

                    
Query: 311  cacggcgt 318
            ||||||||
Sbjct: 1595 cacggcgt 1588



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 132/161 (81%)
 Strand = Plus / Plus

                                                                            
Query: 158      ctccctggatgagtcaccctccgggaacaggcaggcccatcccctggaccagatctcaaa 217
                |||||| |||||||| ||||| ||||||||||| ||||| ||| | ||||| || || ||
Sbjct: 33864681 ctccctagatgagtcgccctcagggaacaggcaagcccaaccctttgaccaaatttcgaa 33864740

                                                                            
Query: 218      cgcttnatctttccaaaccatgaagctcgccgagtcaacgacggtaggctggatgatctc 277
                 ||||  |||||||||||||| ||||| || ||||||||||| || |||||||  || ||
Sbjct: 33864741 agcttcgtctttccaaaccataaagctggctgagtcaacgacagttggctggactatttc 33864800

                                                         
Query: 278      cttgccggngaacacgccccaagtgacagcgttcacggcgt 318
                |||||| | ||| || ||||| ||||| || ||||| ||||
Sbjct: 33864801 cttgccagggaaaacaccccatgtgaccgcattcacagcgt 33864841



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                            
Query: 66       atctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgacc 125
                ||||||||||| || || ||||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 33864258 atctccttgaacgccgcgaagagatcaccgttgatgtagtcgttgtccacaagactaacc 33864317

                                       
Query: 126      aggcaataggtcttctgcacctg 148
                | | | ||| ||||||| |||||
Sbjct: 33864318 aagaagtagctcttctggacctg 33864340



to top

>gb|AC135594.4| Oryza sativa chromosome 3 BAC OSJNBa0024F18 genomic sequence,
            complete sequence
          Length = 159795

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 132/161 (81%)
 Strand = Plus / Minus

                                                                        
Query: 158  ctccctggatgagtcaccctccgggaacaggcaggcccatcccctggaccagatctcaaa 217
            |||||| |||||||| ||||| ||||||||||| ||||| ||| | ||||| || || ||
Sbjct: 8559 ctccctagatgagtcgccctcagggaacaggcaagcccaaccctttgaccaaatttcgaa 8500

                                                                        
Query: 218  cgcttnatctttccaaaccatgaagctcgccgagtcaacgacggtaggctggatgatctc 277
             ||||  |||||||||||||| ||||| || ||||||||||| || |||||||  || ||
Sbjct: 8499 agcttcgtctttccaaaccataaagctggctgagtcaacgacagttggctggactatttc 8440

                                                     
Query: 278  cttgccggngaacacgccccaagtgacagcgttcacggcgt 318
            |||||| | ||| || ||||| ||||| || ||||| ||||
Sbjct: 8439 cttgccagggaaaacaccccatgtgaccgcattcacagcgt 8399



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                        
Query: 66   atctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgacc 125
            ||||||||||| || || ||||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 8982 atctccttgaacgccgcgaagagatcaccgttgatgtagtcgttgtccacaagactaacc 8923

                                   
Query: 126  aggcaataggtcttctgcacctg 148
            | | | ||| ||||||| |||||
Sbjct: 8922 aagaagtagctcttctggacctg 8900



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 132/161 (81%)
 Strand = Plus / Plus

                                                                            
Query: 158      ctccctggatgagtcaccctccgggaacaggcaggcccatcccctggaccagatctcaaa 217
                |||||| |||||||| ||||| ||||||||||| ||||| ||| | ||||| || || ||
Sbjct: 33955153 ctccctagatgagtcgccctcagggaacaggcaagcccaaccctttgaccaaatttcgaa 33955212

                                                                            
Query: 218      cgcttnatctttccaaaccatgaagctcgccgagtcaacgacggtaggctggatgatctc 277
                 ||||  |||||||||||||| ||||| || ||||||||||| || |||||||  || ||
Sbjct: 33955213 agcttcgtctttccaaaccataaagctggctgagtcaacgacagttggctggactatttc 33955272

                                                         
Query: 278      cttgccggngaacacgccccaagtgacagcgttcacggcgt 318
                |||||| | ||| || ||||| ||||| || ||||| ||||
Sbjct: 33955273 cttgccagggaaaacaccccatgtgaccgcattcacagcgt 33955313



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                            
Query: 66       atctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgacc 125
                ||||||||||| || || ||||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 33954730 atctccttgaacgccgcgaagagatcaccgttgatgtagtcgttgtccacaagactaacc 33954789

                                       
Query: 126      aggcaataggtcttctgcacctg 148
                | | | ||| ||||||| |||||
Sbjct: 33954790 aagaagtagctcttctggacctg 33954812



to top

>gb|BT019001.1| Zea mays clone Contig489.F mRNA sequence
          Length = 509

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                       
Query: 71  cttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaaggctgaccaggca 130
           |||||| |||||||| ||||||||   || |||||| ||||| ||||||||||||||| |
Sbjct: 407 cttgaaggcagcaaacaggtccccctggacgtagtcgttgtcaacaaggctgaccaggta 466

                                 
Query: 131 ataggtcttctgcacctgctct 152
            ||||||||||| |||| ||||
Sbjct: 467 gtaggtcttctgaaccttctct 488



to top

>ref|XM_362588.1| Magnaporthe grisea 70-15 hypothetical protein (MG08171.4) partial
            mRNA
          Length = 2073

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 272  gatctccttgccggngaacacgccccaagtgacagcgttc 311
            |||||||||||| | ||| |||||||||||||| ||||||
Sbjct: 1866 gatctccttgccagggaaaacgccccaagtgacggcgttc 1827



to top

>dbj|AK058876.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-G01, full
           insert sequence
          Length = 304

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 66  atctccttgaatgcagcaaagaggtccccgctgatgtagtcattgtccacaag 118
           ||||||||||| || || ||||| || ||| |||||||||| |||||||||||
Sbjct: 95  atctccttgaacgccgcgaagagatcaccgttgatgtagtcgttgtccacaag 43



to top

>gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 12, complete
              sequence
          Length = 906719

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 276    tccttgccggngaacacgccccaagtgacagcgtt 310
              |||||||||| ||| || |||||||||||||||||
Sbjct: 349895 tccttgccggggaagacaccccaagtgacagcgtt 349929



to top

>ref|XM_568023.1| Cryptococcus neoformans var. neoformans JEC21
            methylenetetrahydrofolate reductase (NADPH) (CNL04820)
            partial mRNA
          Length = 2382

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 276  tccttgccggngaacacgccccaagtgacagcgtt 310
            |||||||||| ||| || |||||||||||||||||
Sbjct: 1777 tccttgccggggaagacaccccaagtgacagcgtt 1743



to top

>gb|AC140347.3| Mus musculus BAC clone RP23-233K3 from chromosome 7, complete sequence
          Length = 153366

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 98     gatgtagtcattgtccacaagg 119
              ||||||||||||||||||||||
Sbjct: 100255 gatgtagtcattgtccacaagg 100234



to top

>gb|AC154911.4| Mus musculus BAC clone RP23-25I3 from chromosome 7, complete sequence
          Length = 228885

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 98     gatgtagtcattgtccacaagg 119
              ||||||||||||||||||||||
Sbjct: 205668 gatgtagtcattgtccacaagg 205647



to top

>ref|XM_953671.1| Neurospora crassa OR74A hypothetical protein (NCU09545.1) partial
            mRNA
          Length = 2046

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 276  tccttgccggngaacacgcccca 298
            |||||||||| ||||||||||||
Sbjct: 1835 tccttgccggggaacacgcccca 1813



to top

>ref|XM_329903.1| Neurospora crassa OR74A hypothetical protein (NCU09545.1) partial
            mRNA
          Length = 2046

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 276  tccttgccggngaacacgcccca 298
            |||||||||| ||||||||||||
Sbjct: 1835 tccttgccggggaacacgcccca 1813



to top

>emb|AL450267.10| Human DNA sequence from clone RP11-344B23 on chromosome 9 Contains the
             3' end of the PAX5 gene for paired box gene 5 (B-cell
             lineage specific activator protein) (BSAP), complete
             sequence
          Length = 125110

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 181   ggaacaggcaggcccatcccctgg 204
             |||| |||||||||||||||||||
Sbjct: 51971 ggaagaggcaggcccatcccctgg 51948



to top

>emb|BX842620.1| Neurospora crassa DNA linkage group V BAC contig B11E5
          Length = 191196

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 276    tccttgccggngaacacgcccca 298
              |||||||||| ||||||||||||
Sbjct: 122798 tccttgccggggaacacgcccca 122776



to top

>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 189     caggcccatcccctggaccagatc 212
               ||||||||||||| ||||||||||
Sbjct: 2852036 caggcccatcccccggaccagatc 2852059



to top

>gb|AC153616.8| Mus musculus 6 BAC RP23-328I7 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 195332

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    cttctgcacctgctctagca 156
              ||||||||||||||||||||
Sbjct: 169133 cttctgcacctgctctagca 169114



to top

>gb|AC115003.18| Mus musculus chromosome 6, clone RP24-179P9, complete sequence
          Length = 168290

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    cttctgcacctgctctagca 156
              ||||||||||||||||||||
Sbjct: 159242 cttctgcacctgctctagca 159261


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,854,811
Number of Sequences: 3902068
Number of extensions: 1854811
Number of successful extensions: 33875
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33808
Number of HSP's gapped (non-prelim): 67
length of query: 318
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 296
effective length of database: 17,147,199,772
effective search space: 5075571132512
effective search space used: 5075571132512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top