ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20i16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK066310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063E15, full insert sequence Length = 3170 Score = 226 bits (114), Expect = 7e-56 Identities = 302/362 (83%), Gaps = 12/362 (3%) Strand = Plus / Minus Query: 273 catcatatattccacctcttatcagatggattgtgaggaacagcaac-gc-----tgctc 326 |||||||||| ||| ||| ||||||||| |||| ||||||||| ||| || |||| Sbjct: 2848 catcatatatgccatctcctatcagatgaattgggaggaacaggaacagcaccattgctt 2789 Query: 327 ttcacattttgctgagcctgggaagatgaccgttgcatgcgaggagatgtctcgttttta 386 |||||||| |||||||| ||||| ||||| ||||||||||||||||||| || | ||| Sbjct: 2788 ttcacattctgctgagcttgggatgatgatcgttgcatgcgaggagatgaatcttgctta 2729 Query: 387 ccgtttgtgatgggcaaagaatgcctcttcctcgggttgttgtcttgcacgtctgggctt 446 ||||| || ||||||||||| ||||| ||||| || |||||||||||||| || |||||| Sbjct: 2728 ccgttagtcatgggcaaagagtgccttttccttggattgttgtcttgcacatccgggctt 2669 Query: 447 aacttcggggataga---gcggccgcctttgctcttgcagattctgtgaactgcatgtaa 503 ||||| || |||| | || | |||||||| |||||||||||||| |||||||| ||| Sbjct: 2668 aactttggtgatacactagcagatgcctttgcccttgcagattctgtaaactgcatataa 2609 Query: 504 cttggcaatggagtgctgttgctcatgcgaggttcttgatcagcgttttcagacttggca 563 ||||||||||||||||||||||| |||||||||||||||||| | | ||||| || | Sbjct: 2608 cttggcaatggagtgctgttgcttatgcgaggttcttgatcaacatgatcagattt---a 2552 Query: 564 accttgcctgagctctctctcttcgcatgcttataatcctttgacaggttatccgtgctg 623 ||||||||||||||||||| | || || | | |||||||||||||| |||||| ||||| Sbjct: 2551 accttgcctgagctctctcgcctcccaagtctgtaatcctttgacagattatccatgctg 2492 Query: 624 ct 625 || Sbjct: 2491 ct 2490
>ref|XM_474230.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2682 Score = 224 bits (113), Expect = 3e-55 Identities = 270/321 (84%), Gaps = 6/321 (1%) Strand = Plus / Minus Query: 308 aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 367 |||||||||| | |||| |||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 2643 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 2584 Query: 368 aggagatgtctcgtttttaccgtttgtgatgggcaaagaatgcctcttcctcgggttgtt 427 |||||||| || | |||||||| || ||||||||||| ||||| ||||| || ||||| Sbjct: 2583 aggagatgaatcttgcttaccgttagtcatgggcaaagagtgccttttccttggattgtt 2524 Query: 428 gtcttgcacgtctgggcttaacttcggggataga---gcggccgcctttgctcttgcaga 484 ||||||||| || ||||||||||| || |||| | || | |||||||| |||||||| Sbjct: 2523 gtcttgcacatccgggcttaactttggtgatacactagcagatgcctttgcccttgcaga 2464 Query: 485 ttctgtgaactgcatgtaacttggcaatggagtgctgttgctcatgcgaggttcttgatc 544 |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 2463 ttctgtaaactgcatataacttggcaatggagtgctgttgcttatgcgaggttcttgatc 2404 Query: 545 agcgttttcagacttggcaaccttgcctgagctctctctcttcgcatgcttataatcctt 604 | | | ||||| || |||||||||||||||||||| | || || | | |||||||| Sbjct: 2403 aacatgatcagattt---aaccttgcctgagctctctcgcctcccaagtctgtaatcctt 2347 Query: 605 tgacaggttatccgtgctgct 625 |||||| |||||| ||||||| Sbjct: 2346 tgacagattatccatgctgct 2326
>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01, complete sequence Length = 163448 Score = 224 bits (113), Expect = 3e-55 Identities = 270/321 (84%), Gaps = 6/321 (1%) Strand = Plus / Minus Query: 308 aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 367 |||||||||| | |||| |||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 90590 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 90531 Query: 368 aggagatgtctcgtttttaccgtttgtgatgggcaaagaatgcctcttcctcgggttgtt 427 |||||||| || | |||||||| || ||||||||||| ||||| ||||| || ||||| Sbjct: 90530 aggagatgaatcttgcttaccgttagtcatgggcaaagagtgccttttccttggattgtt 90471 Query: 428 gtcttgcacgtctgggcttaacttcggggataga---gcggccgcctttgctcttgcaga 484 ||||||||| || ||||||||||| || |||| | || | |||||||| |||||||| Sbjct: 90470 gtcttgcacatccgggcttaactttggtgatacactagcagatgcctttgcccttgcaga 90411 Query: 485 ttctgtgaactgcatgtaacttggcaatggagtgctgttgctcatgcgaggttcttgatc 544 |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 90410 ttctgtaaactgcatataacttggcaatggagtgctgttgcttatgcgaggttcttgatc 90351 Query: 545 agcgttttcagacttggcaaccttgcctgagctctctctcttcgcatgcttataatcctt 604 | | | ||||| || |||||||||||||||||||| | || || | | |||||||| Sbjct: 90350 aacatgatcagattt---aaccttgcctgagctctctcgcctcccaagtctgtaatcctt 90294 Query: 605 tgacaggttatccgtgctgct 625 |||||| |||||| ||||||| Sbjct: 90293 tgacagattatccatgctgct 90273
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 224 bits (113), Expect = 3e-55 Identities = 270/321 (84%), Gaps = 6/321 (1%) Strand = Plus / Minus Query: 308 aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 367 |||||||||| | |||| |||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 33878691 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 33878632 Query: 368 aggagatgtctcgtttttaccgtttgtgatgggcaaagaatgcctcttcctcgggttgtt 427 |||||||| || | |||||||| || ||||||||||| ||||| ||||| || ||||| Sbjct: 33878631 aggagatgaatcttgcttaccgttagtcatgggcaaagagtgccttttccttggattgtt 33878572 Query: 428 gtcttgcacgtctgggcttaacttcggggataga---gcggccgcctttgctcttgcaga 484 ||||||||| || ||||||||||| || |||| | || | |||||||| |||||||| Sbjct: 33878571 gtcttgcacatccgggcttaactttggtgatacactagcagatgcctttgcccttgcaga 33878512 Query: 485 ttctgtgaactgcatgtaacttggcaatggagtgctgttgctcatgcgaggttcttgatc 544 |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 33878511 ttctgtaaactgcatataacttggcaatggagtgctgttgcttatgcgaggttcttgatc 33878452 Query: 545 agcgttttcagacttggcaaccttgcctgagctctctctcttcgcatgcttataatcctt 604 | | | ||||| || |||||||||||||||||||| | || || | | |||||||| Sbjct: 33878451 aacatgatcagattt---aaccttgcctgagctctctcgcctcccaagtctgtaatcctt 33878395 Query: 605 tgacaggttatccgtgctgct 625 |||||| |||||| ||||||| Sbjct: 33878394 tgacagattatccatgctgct 33878374
>gb|AY111989.1| Zea mays CL13024_1 mRNA sequence Length = 531 Score = 67.9 bits (34), Expect = 4e-08 Identities = 96/116 (82%), Gaps = 3/116 (2%) Strand = Plus / Plus Query: 396 atgggcaaagaatgcctcttcctcgggttgttgtcttgcacgtctgggcttaacttcggg 455 |||||||| || ||||| ||||| |||||| |||| ||||| |||||||| | ||||||| Sbjct: 406 atgggcaacgagtgccttttccttgggttgctgtcctgcacatctgggctcatcttcggg 465 Query: 456 gatagagcggccgcctttgctcttgcagattctgtgaactgcatgtaacttggcaa 511 || | | |||||| ||||||||||||||||| || |||||||| |||||||| Sbjct: 466 gac---gacgacgccttggctcttgcagattctgtaaattgcatgtagcttggcaa 518
>gb|AC104283.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1607_F09, complete sequence Length = 95755 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 248 ggcacctcgtcgatgtgctgccatcc 273 ||||||||||||||||||||| |||| Sbjct: 29872 ggcacctcgtcgatgtgctgcaatcc 29847
>gb|AC004745.2| Homo sapiens BAC clone CTA-281B9 from 7, complete sequence Length = 97137 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 attccaaggaaaaaatattaag 166 |||||||||||||||||||||| Sbjct: 56791 attccaaggaaaaaatattaag 56770
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 83 aaccaataagatcaaccaacaa 104 |||||||||||||||||||||| Sbjct: 61795 aaccaataagatcaaccaacaa 61816
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 83 aaccaataagatcaaccaacaa 104 |||||||||||||||||||||| Sbjct: 65746 aaccaataagatcaaccaacaa 65767
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 248 ggcacctcgtcgatgtgctgccatcc 273 ||||||||||||||||||||| |||| Sbjct: 2462850 ggcacctcgtcgatgtgctgcaatcc 2462825
>dbj|AK106538.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-C10, full insert sequence Length = 2109 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 248 ggcacctcgtcgatgtgctgccatcc 273 ||||||||||||||||||||| |||| Sbjct: 1789 ggcacctcgtcgatgtgctgcaatcc 1814
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 83 aaccaataagatcaaccaacaa 104 |||||||||||||||||||||| Sbjct: 65746 aaccaataagatcaaccaacaa 65767
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 83 aaccaataagatcaaccaacaa 104 |||||||||||||||||||||| Sbjct: 61795 aaccaataagatcaaccaacaa 61816
>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147503 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 83 aaccaataagatcaaccaacaa 104 |||||||||||||||||||||| Sbjct: 65746 aaccaataagatcaaccaacaa 65767
>emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131346 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 83 aaccaataagatcaaccaacaa 104 |||||||||||||||||||||| Sbjct: 61795 aaccaataagatcaaccaacaa 61816
>emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161808 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 83 aaccaataagatcaaccaacaa 104 |||||||||||||||||||||| Sbjct: 13404 aaccaataagatcaaccaacaa 13425
>gb|AC123032.5| Mus musculus BAC clone RP24-480K24 from chromosome 10, complete sequence Length = 162676 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 87 aataagatcaaccaacaaatgtaca 111 ||||||||||||||||||| ||||| Sbjct: 3527 aataagatcaaccaacaaaggtaca 3551
>gb|AC121602.2| Mus musculus BAC clone RP23-309B19 from 10, complete sequence Length = 182661 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 aataagatcaaccaacaaatgtaca 111 ||||||||||||||||||| ||||| Sbjct: 52926 aataagatcaaccaacaaaggtaca 52902
>gb|AC011288.4| Homo sapiens BAC clone RP11-27B1 from 7, complete sequence Length = 159722 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 228 ttctagatatttgatttgatggcac 252 ||||||||||| ||||||||||||| Sbjct: 94586 ttctagatattggatttgatggcac 94610
>gb|AC148449.2| Xenopus tropicalis clone CH216-118D6, complete sequence Length = 165682 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 atcaaccaacaaatgtacata 113 ||||||||||||||||||||| Sbjct: 131886 atcaaccaacaaatgtacata 131866
>gb|AC068797.29| Homo sapiens 12 BAC RP1-81P11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 136257 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 574 agctctctctcttcgcatgct 594 ||||||||||||||||||||| Sbjct: 29535 agctctctctcttcgcatgct 29555
>emb|BX255965.12| Zebrafish DNA sequence from clone CH211-270C19, complete sequence Length = 148298 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 314 agcaacgctgctcttcacatt 334 ||||||||||||||||||||| Sbjct: 4974 agcaacgctgctcttcacatt 4994
>emb|BX649457.15| Zebrafish DNA sequence from clone DKEYP-87E7 in linkage group 22, complete sequence Length = 159207 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 caaggaaaaaatattaagaaa 169 ||||||||||||||||||||| Sbjct: 46798 caaggaaaaaatattaagaaa 46778
>gb|AC130671.7| Mus musculus chromosome 15, clone RP24-90K19, complete sequence Length = 205646 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tgcagattctgtgaactgca 498 |||||||||||||||||||| Sbjct: 147005 tgcagattctgtgaactgca 146986
>gb|AC104516.2| Drosophila melanogaster clone BACR20O17, complete sequence Length = 174404 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 atgtctcgtttttaccgttt 392 |||||||||||||||||||| Sbjct: 42647 atgtctcgtttttaccgttt 42628
>gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, complete sequence Length = 194380 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 ttccaaggaaaaaatattaagaaa 169 ||||||||||||||||| |||||| Sbjct: 42422 ttccaaggaaaaaatatgaagaaa 42445
>ref|XM_865972.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 3 (LOC529923), mRNA Length = 2313 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 tgaagctgctgctcttctcc 138 |||||||||||||||||||| Sbjct: 296 tgaagctgctgctcttctcc 315
>ref|XM_608385.2| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 2 (LOC529923), mRNA Length = 2184 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 tgaagctgctgctcttctcc 138 |||||||||||||||||||| Sbjct: 296 tgaagctgctgctcttctcc 315
>ref|XM_877301.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 4 (LOC529923), mRNA Length = 2340 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 tgaagctgctgctcttctcc 138 |||||||||||||||||||| Sbjct: 296 tgaagctgctgctcttctcc 315
>gb|BC072233.1| Xenopus laevis hypothetical protein MGC81517, mRNA (cDNA clone MGC:81517 IMAGE:6637322), complete cds Length = 3425 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 actgctgttgctcgttccaa 21 |||||||||||||||||||| Sbjct: 3043 actgctgttgctcgttccaa 3024
>gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, complete sequence Length = 196843 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gctgctcttcacattttgct 339 |||||||||||||||||||| Sbjct: 126157 gctgctcttcacattttgct 126138
>ref|XM_853575.1| PREDICTED: Canis familiaris similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 4 (LOC477456), mRNA Length = 2505 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 tgaagctgctgctcttctcc 138 |||||||||||||||||||| Sbjct: 500 tgaagctgctgctcttctcc 519
>ref|XM_534654.2| PREDICTED: Canis familiaris similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 1 (LOC477456), mRNA Length = 2376 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 tgaagctgctgctcttctcc 138 |||||||||||||||||||| Sbjct: 500 tgaagctgctgctcttctcc 519
>ref|XM_844280.1| PREDICTED: Canis familiaris similar to ATP-binding cassette, sub-family B (MDR/TAP), member 9 isoform 2, transcript variant 3 (LOC477456), mRNA Length = 2532 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 tgaagctgctgctcttctcc 138 |||||||||||||||||||| Sbjct: 500 tgaagctgctgctcttctcc 519
>emb|CR848816.11| Zebrafish DNA sequence from clone DKEY-99F10 in linkage group 11, complete sequence Length = 158354 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 536 ttcttgatcagcgttttcagactt 559 ||||||||||||||||||| |||| Sbjct: 118919 ttcttgatcagcgttttcacactt 118896
>gb|AC139209.10| Mus musculus chromosome 15, clone RP23-153G2, complete sequence Length = 211178 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 aaggaaaaaatattaagaaa 169 |||||||||||||||||||| Sbjct: 22941 aaggaaaaaatattaagaaa 22922
>gb|AC110238.10| Mus musculus chromosome 5, clone RP23-106D12, complete sequence Length = 197964 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 ttccaaggaaaaaatattaagaaa 169 ||||||||||||||||| |||||| Sbjct: 11400 ttccaaggaaaaaatatgaagaaa 11377
>gb|AC122161.26| Medicago truncatula clone mth2-11l3, complete sequence Length = 118625 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 gtattccaaggaaaaaatattaag 166 |||||||||||||||||| ||||| Sbjct: 27191 gtattccaaggaaaaaattttaag 27214
>gb|AC122171.21| Medicago truncatula clone mth2-23b18, complete sequence Length = 125865 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 gtattccaaggaaaaaatattaag 166 |||||||||||||||||| ||||| Sbjct: 90882 gtattccaaggaaaaaattttaag 90859
>emb|AL445219.14| Human DNA sequence from clone RP11-71L7 on chromosome 13 Contains a novel gene, complete sequence Length = 103728 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 atcagtattccaaggaaaaa 158 |||||||||||||||||||| Sbjct: 47242 atcagtattccaaggaaaaa 47223
>emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on chromosome 10 Contains part of the PARD3 gene for par-3 partitioning defective 3 homolog (C.elegans), complete sequence Length = 193131 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gctgctcttcacattttgct 339 |||||||||||||||||||| Sbjct: 122764 gctgctcttcacattttgct 122745
>emb|AL359828.13| Human DNA sequence from clone RP5-954P9 on chromosome 20 Contains the 3' end of the C20orf152 gene and a CpG island, complete sequence Length = 38545 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 tattccaaggaaaaaatatt 163 |||||||||||||||||||| Sbjct: 8197 tattccaaggaaaaaatatt 8178
>emb|BX571949.19| Zebrafish DNA sequence from clone DKEY-25F1 in linkage group 11, complete sequence Length = 149012 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 536 ttcttgatcagcgttttcagactt 559 ||||||||||||||||||| |||| Sbjct: 67395 ttcttgatcagcgttttcacactt 67418
>gb|AC161575.3| Mus musculus chromosome 15, clone RP24-264K6, complete sequence Length = 164213 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 aaggaaaaaatattaagaaa 169 |||||||||||||||||||| Sbjct: 23018 aaggaaaaaatattaagaaa 22999
>emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 in linkage group 5, complete sequence Length = 142908 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 tctagatatttgatttgatg 248 |||||||||||||||||||| Sbjct: 119377 tctagatatttgatttgatg 119358
>gb|AC087429.2| Homo sapiens chromosome 3 clone 2063K18 map 3p, complete sequence Length = 88688 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 142 agtattccaaggaaaaaatattaagaaa 169 |||||||||||||||||| ||| ||||| Sbjct: 17332 agtattccaaggaaaaaaaattgagaaa 17305
>gb|AC064805.13| Homo sapiens chromosome 17, clone CTD-2006K23, complete sequence Length = 87833 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 atgaagctgctgctcttctc 137 |||||||||||||||||||| Sbjct: 84973 atgaagctgctgctcttctc 84954
>ref|XM_627943.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd1_970), partial mRNA Length = 2502 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 ttccaaggaaaaaatattaa 165 |||||||||||||||||||| Sbjct: 966 ttccaaggaaaaaatattaa 985
>gb|AC158955.2| Mus musculus chromosome 15, clone RP23-22C17, complete sequence Length = 256999 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tgcagattctgtgaactgca 498 |||||||||||||||||||| Sbjct: 86103 tgcagattctgtgaactgca 86084
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aggaaaaaatattaagaaac 170 |||||||||||||||||||| Sbjct: 7050069 aggaaaaaatattaagaaac 7050050
>gb|AC157089.5| Mus musculus 10 BAC RP24-339G14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 160723 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 469 cctttgctcttgcagattctgtga 492 |||||||||||||||| ||||||| Sbjct: 38112 cctttgctcttgcagactctgtga 38135
>gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, complete sequence Length = 163597 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 atgaagctgctgctcttctc 137 |||||||||||||||||||| Sbjct: 46103 atgaagctgctgctcttctc 46084
>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0452F10 Length = 145120 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aggaaaaaatattaagaaac 170 |||||||||||||||||||| Sbjct: 37649 aggaaaaaatattaagaaac 37630
>emb|CT010479.25| Mouse DNA sequence from clone RP23-233G23 on chromosome 17, complete sequence Length = 203311 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 aaggaaaaaatattaagaaa 169 |||||||||||||||||||| Sbjct: 142524 aaggaaaaaatattaagaaa 142543
>gb|AE003510.5| Drosophila melanogaster chromosome X, section 62 of 74 of the complete sequence Length = 297236 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 atgtctcgtttttaccgttt 392 |||||||||||||||||||| Sbjct: 217322 atgtctcgtttttaccgttt 217303
>dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-344L21, complete sequence Length = 186656 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 cttctagatatttgatttga 246 |||||||||||||||||||| Sbjct: 110819 cttctagatatttgatttga 110800
>gb|AC087431.3| Homo sapiens chromosome 3 clone RP11-775C23 map 3p, complete sequence Length = 196745 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 142 agtattccaaggaaaaaatattaagaaa 169 |||||||||||||||||| ||| ||||| Sbjct: 144471 agtattccaaggaaaaaaaattgagaaa 144444 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,561,073 Number of Sequences: 3902068 Number of extensions: 6561073 Number of successful extensions: 125281 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124856 Number of HSP's gapped (non-prelim): 417 length of query: 626 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 603 effective length of database: 17,143,297,704 effective search space: 10337408515512 effective search space used: 10337408515512 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
