ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20i16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK066310.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 7e-56
2ref|XM_474230.1| Oryza sativa (japonica cultivar-group), predic... 224 3e-55
3emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4,... 224 3e-55
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 224 3e-55
5gb|AY111989.1| Zea mays CL13024_1 mRNA sequence 68 4e-08
6gb|AC104283.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.55
7gb|AC004745.2| Homo sapiens BAC clone CTA-281B9 from 7, complete... 44 0.55
8dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
11dbj|AK106538.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.55
12gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.55
13gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.55
14emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa... 44 0.55
15emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb... 44 0.55
16emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa... 44 0.55
17gb|AC123032.5| Mus musculus BAC clone RP24-480K24 from chromosom... 42 2.2
18gb|AC121602.2| Mus musculus BAC clone RP23-309B19 from 10, compl... 42 2.2
19gb|AC011288.4| Homo sapiens BAC clone RP11-27B1 from 7, complete... 42 2.2
20gb|AC148449.2| Xenopus tropicalis clone CH216-118D6, complete se... 42 2.2
21gb|AC068797.29| Homo sapiens 12 BAC RP1-81P11 (Roswell Park Canc... 42 2.2
22emb|BX255965.12| Zebrafish DNA sequence from clone CH211-270C19,... 42 2.2
23emb|BX649457.15| Zebrafish DNA sequence from clone DKEYP-87E7 in... 42 2.2
24gb|AC130671.7| Mus musculus chromosome 15, clone RP24-90K19, com... 40 8.5
25gb|AC104516.2| Drosophila melanogaster clone BACR20O17, complete... 40 8.5
26gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, com... 40 8.5
27ref|XM_865972.1| PREDICTED: Bos taurus similar to ATP-binding ca... 40 8.5
28ref|XM_608385.2| PREDICTED: Bos taurus similar to ATP-binding ca... 40 8.5
29ref|XM_877301.1| PREDICTED: Bos taurus similar to ATP-binding ca... 40 8.5
30gb|BC072233.1| Xenopus laevis hypothetical protein MGC81517, mRN... 40 8.5
31gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, comp... 40 8.5
32ref|XM_853575.1| PREDICTED: Canis familiaris similar to ATP-bind... 40 8.5
33ref|XM_534654.2| PREDICTED: Canis familiaris similar to ATP-bind... 40 8.5
34ref|XM_844280.1| PREDICTED: Canis familiaris similar to ATP-bind... 40 8.5
35emb|CR848816.11| Zebrafish DNA sequence from clone DKEY-99F10 in... 40 8.5
36gb|AC139209.10| Mus musculus chromosome 15, clone RP23-153G2, co... 40 8.5
37gb|AC110238.10| Mus musculus chromosome 5, clone RP23-106D12, co... 40 8.5
38gb|AC122161.26| Medicago truncatula clone mth2-11l3, complete se... 40 8.5
39gb|AC122171.21| Medicago truncatula clone mth2-23b18, complete s... 40 8.5
40emb|AL445219.14| Human DNA sequence from clone RP11-71L7 on chro... 40 8.5
41emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on ch... 40 8.5
42emb|AL359828.13| Human DNA sequence from clone RP5-954P9 on chro... 40 8.5
43emb|BX571949.19| Zebrafish DNA sequence from clone DKEY-25F1 in ... 40 8.5
44gb|AC161575.3| Mus musculus chromosome 15, clone RP24-264K6, com... 40 8.5
45emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 i... 40 8.5
46gb|AC087429.2| Homo sapiens chromosome 3 clone 2063K18 map 3p, c... 40 8.5
47gb|AC064805.13| Homo sapiens chromosome 17, clone CTD-2006K23, c... 40 8.5
48ref|XM_627943.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 8.5
49gb|AC158955.2| Mus musculus chromosome 15, clone RP23-22C17, com... 40 8.5
50dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
51gb|AC157089.5| Mus musculus 10 BAC RP24-339G14 (Roswell Park Can... 40 8.5
52gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, co... 40 8.5
53dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
54emb|CT010479.25| Mouse DNA sequence from clone RP23-233G23 on ch... 40 8.5
55gb|AE003510.5| Drosophila melanogaster chromosome X, section 62 ... 40 8.5
56dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.5
57gb|AC087431.3| Homo sapiens chromosome 3 clone RP11-775C23 map 3... 40 8.5

>dbj|AK066310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063E15, full
            insert sequence
          Length = 3170

 Score =  226 bits (114), Expect = 7e-56
 Identities = 302/362 (83%), Gaps = 12/362 (3%)
 Strand = Plus / Minus

                                                                        
Query: 273  catcatatattccacctcttatcagatggattgtgaggaacagcaac-gc-----tgctc 326
            |||||||||| ||| ||| ||||||||| |||| ||||||||| ||| ||     |||| 
Sbjct: 2848 catcatatatgccatctcctatcagatgaattgggaggaacaggaacagcaccattgctt 2789

                                                                        
Query: 327  ttcacattttgctgagcctgggaagatgaccgttgcatgcgaggagatgtctcgttttta 386
            |||||||| |||||||| ||||| ||||| |||||||||||||||||||  || |  |||
Sbjct: 2788 ttcacattctgctgagcttgggatgatgatcgttgcatgcgaggagatgaatcttgctta 2729

                                                                        
Query: 387  ccgtttgtgatgggcaaagaatgcctcttcctcgggttgttgtcttgcacgtctgggctt 446
            ||||| || ||||||||||| ||||| ||||| || |||||||||||||| || ||||||
Sbjct: 2728 ccgttagtcatgggcaaagagtgccttttccttggattgttgtcttgcacatccgggctt 2669

                                                                        
Query: 447  aacttcggggataga---gcggccgcctttgctcttgcagattctgtgaactgcatgtaa 503
            ||||| || |||| |   || |  |||||||| |||||||||||||| |||||||| |||
Sbjct: 2668 aactttggtgatacactagcagatgcctttgcccttgcagattctgtaaactgcatataa 2609

                                                                        
Query: 504  cttggcaatggagtgctgttgctcatgcgaggttcttgatcagcgttttcagacttggca 563
            ||||||||||||||||||||||| |||||||||||||||||| | |  ||||| ||   |
Sbjct: 2608 cttggcaatggagtgctgttgcttatgcgaggttcttgatcaacatgatcagattt---a 2552

                                                                        
Query: 564  accttgcctgagctctctctcttcgcatgcttataatcctttgacaggttatccgtgctg 623
            ||||||||||||||||||| | || || |  | |||||||||||||| |||||| |||||
Sbjct: 2551 accttgcctgagctctctcgcctcccaagtctgtaatcctttgacagattatccatgctg 2492

              
Query: 624  ct 625
            ||
Sbjct: 2491 ct 2490



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>ref|XM_474230.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2682

 Score =  224 bits (113), Expect = 3e-55
 Identities = 270/321 (84%), Gaps = 6/321 (1%)
 Strand = Plus / Minus

                                                                        
Query: 308  aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 367
            |||||||||| |  |||| |||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 2643 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 2584

                                                                        
Query: 368  aggagatgtctcgtttttaccgtttgtgatgggcaaagaatgcctcttcctcgggttgtt 427
            ||||||||  || |  |||||||| || ||||||||||| ||||| ||||| || |||||
Sbjct: 2583 aggagatgaatcttgcttaccgttagtcatgggcaaagagtgccttttccttggattgtt 2524

                                                                        
Query: 428  gtcttgcacgtctgggcttaacttcggggataga---gcggccgcctttgctcttgcaga 484
            ||||||||| || ||||||||||| || |||| |   || |  |||||||| ||||||||
Sbjct: 2523 gtcttgcacatccgggcttaactttggtgatacactagcagatgcctttgcccttgcaga 2464

                                                                        
Query: 485  ttctgtgaactgcatgtaacttggcaatggagtgctgttgctcatgcgaggttcttgatc 544
            |||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2463 ttctgtaaactgcatataacttggcaatggagtgctgttgcttatgcgaggttcttgatc 2404

                                                                        
Query: 545  agcgttttcagacttggcaaccttgcctgagctctctctcttcgcatgcttataatcctt 604
            | | |  ||||| ||   |||||||||||||||||||| | || || |  | ||||||||
Sbjct: 2403 aacatgatcagattt---aaccttgcctgagctctctcgcctcccaagtctgtaatcctt 2347

                                 
Query: 605  tgacaggttatccgtgctgct 625
            |||||| |||||| |||||||
Sbjct: 2346 tgacagattatccatgctgct 2326



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>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01,
             complete sequence
          Length = 163448

 Score =  224 bits (113), Expect = 3e-55
 Identities = 270/321 (84%), Gaps = 6/321 (1%)
 Strand = Plus / Minus

                                                                         
Query: 308   aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 367
             |||||||||| |  |||| |||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 90590 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 90531

                                                                         
Query: 368   aggagatgtctcgtttttaccgtttgtgatgggcaaagaatgcctcttcctcgggttgtt 427
             ||||||||  || |  |||||||| || ||||||||||| ||||| ||||| || |||||
Sbjct: 90530 aggagatgaatcttgcttaccgttagtcatgggcaaagagtgccttttccttggattgtt 90471

                                                                         
Query: 428   gtcttgcacgtctgggcttaacttcggggataga---gcggccgcctttgctcttgcaga 484
             ||||||||| || ||||||||||| || |||| |   || |  |||||||| ||||||||
Sbjct: 90470 gtcttgcacatccgggcttaactttggtgatacactagcagatgcctttgcccttgcaga 90411

                                                                         
Query: 485   ttctgtgaactgcatgtaacttggcaatggagtgctgttgctcatgcgaggttcttgatc 544
             |||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 90410 ttctgtaaactgcatataacttggcaatggagtgctgttgcttatgcgaggttcttgatc 90351

                                                                         
Query: 545   agcgttttcagacttggcaaccttgcctgagctctctctcttcgcatgcttataatcctt 604
             | | |  ||||| ||   |||||||||||||||||||| | || || |  | ||||||||
Sbjct: 90350 aacatgatcagattt---aaccttgcctgagctctctcgcctcccaagtctgtaatcctt 90294

                                  
Query: 605   tgacaggttatccgtgctgct 625
             |||||| |||||| |||||||
Sbjct: 90293 tgacagattatccatgctgct 90273



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  224 bits (113), Expect = 3e-55
 Identities = 270/321 (84%), Gaps = 6/321 (1%)
 Strand = Plus / Minus

                                                                            
Query: 308      aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 367
                |||||||||| |  |||| |||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 33878691 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 33878632

                                                                            
Query: 368      aggagatgtctcgtttttaccgtttgtgatgggcaaagaatgcctcttcctcgggttgtt 427
                ||||||||  || |  |||||||| || ||||||||||| ||||| ||||| || |||||
Sbjct: 33878631 aggagatgaatcttgcttaccgttagtcatgggcaaagagtgccttttccttggattgtt 33878572

                                                                            
Query: 428      gtcttgcacgtctgggcttaacttcggggataga---gcggccgcctttgctcttgcaga 484
                ||||||||| || ||||||||||| || |||| |   || |  |||||||| ||||||||
Sbjct: 33878571 gtcttgcacatccgggcttaactttggtgatacactagcagatgcctttgcccttgcaga 33878512

                                                                            
Query: 485      ttctgtgaactgcatgtaacttggcaatggagtgctgttgctcatgcgaggttcttgatc 544
                |||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 33878511 ttctgtaaactgcatataacttggcaatggagtgctgttgcttatgcgaggttcttgatc 33878452

                                                                            
Query: 545      agcgttttcagacttggcaaccttgcctgagctctctctcttcgcatgcttataatcctt 604
                | | |  ||||| ||   |||||||||||||||||||| | || || |  | ||||||||
Sbjct: 33878451 aacatgatcagattt---aaccttgcctgagctctctcgcctcccaagtctgtaatcctt 33878395

                                     
Query: 605      tgacaggttatccgtgctgct 625
                |||||| |||||| |||||||
Sbjct: 33878394 tgacagattatccatgctgct 33878374



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>gb|AY111989.1| Zea mays CL13024_1 mRNA sequence
          Length = 531

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 96/116 (82%), Gaps = 3/116 (2%)
 Strand = Plus / Plus

                                                                       
Query: 396 atgggcaaagaatgcctcttcctcgggttgttgtcttgcacgtctgggcttaacttcggg 455
           |||||||| || ||||| ||||| |||||| |||| ||||| |||||||| | |||||||
Sbjct: 406 atgggcaacgagtgccttttccttgggttgctgtcctgcacatctgggctcatcttcggg 465

                                                                   
Query: 456 gatagagcggccgcctttgctcttgcagattctgtgaactgcatgtaacttggcaa 511
           ||    |  | |||||| ||||||||||||||||| || |||||||| ||||||||
Sbjct: 466 gac---gacgacgccttggctcttgcagattctgtaaattgcatgtagcttggcaa 518



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>gb|AC104283.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1607_F09,
             complete sequence
          Length = 95755

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 248   ggcacctcgtcgatgtgctgccatcc 273
             ||||||||||||||||||||| ||||
Sbjct: 29872 ggcacctcgtcgatgtgctgcaatcc 29847



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>gb|AC004745.2| Homo sapiens BAC clone CTA-281B9 from 7, complete sequence
          Length = 97137

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 145   attccaaggaaaaaatattaag 166
             ||||||||||||||||||||||
Sbjct: 56791 attccaaggaaaaaatattaag 56770



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
             complete sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 83    aaccaataagatcaaccaacaa 104
             ||||||||||||||||||||||
Sbjct: 61795 aaccaataagatcaaccaacaa 61816



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
             complete sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 83    aaccaataagatcaaccaacaa 104
             ||||||||||||||||||||||
Sbjct: 65746 aaccaataagatcaaccaacaa 65767



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 248     ggcacctcgtcgatgtgctgccatcc 273
               ||||||||||||||||||||| ||||
Sbjct: 2462850 ggcacctcgtcgatgtgctgcaatcc 2462825



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>dbj|AK106538.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-C10, full
            insert sequence
          Length = 2109

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 248  ggcacctcgtcgatgtgctgccatcc 273
            ||||||||||||||||||||| ||||
Sbjct: 1789 ggcacctcgtcgatgtgctgcaatcc 1814



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 83    aaccaataagatcaaccaacaa 104
             ||||||||||||||||||||||
Sbjct: 65746 aaccaataagatcaaccaacaa 65767



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 83    aaccaataagatcaaccaacaa 104
             ||||||||||||||||||||||
Sbjct: 61795 aaccaataagatcaaccaacaa 61816



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>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147503

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 83    aaccaataagatcaaccaacaa 104
             ||||||||||||||||||||||
Sbjct: 65746 aaccaataagatcaaccaacaa 65767



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>emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131346

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 83    aaccaataagatcaaccaacaa 104
             ||||||||||||||||||||||
Sbjct: 61795 aaccaataagatcaaccaacaa 61816



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>emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 161808

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 83    aaccaataagatcaaccaacaa 104
             ||||||||||||||||||||||
Sbjct: 13404 aaccaataagatcaaccaacaa 13425



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>gb|AC123032.5| Mus musculus BAC clone RP24-480K24 from chromosome 10, complete
            sequence
          Length = 162676

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 87   aataagatcaaccaacaaatgtaca 111
            ||||||||||||||||||| |||||
Sbjct: 3527 aataagatcaaccaacaaaggtaca 3551



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>gb|AC121602.2| Mus musculus BAC clone RP23-309B19 from 10, complete sequence
          Length = 182661

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 87    aataagatcaaccaacaaatgtaca 111
             ||||||||||||||||||| |||||
Sbjct: 52926 aataagatcaaccaacaaaggtaca 52902



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>gb|AC011288.4| Homo sapiens BAC clone RP11-27B1 from 7, complete sequence
          Length = 159722

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 228   ttctagatatttgatttgatggcac 252
             ||||||||||| |||||||||||||
Sbjct: 94586 ttctagatattggatttgatggcac 94610



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>gb|AC148449.2| Xenopus tropicalis clone CH216-118D6, complete sequence
          Length = 165682

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 93     atcaaccaacaaatgtacata 113
              |||||||||||||||||||||
Sbjct: 131886 atcaaccaacaaatgtacata 131866



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>gb|AC068797.29| Homo sapiens 12 BAC RP1-81P11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 136257

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 574   agctctctctcttcgcatgct 594
             |||||||||||||||||||||
Sbjct: 29535 agctctctctcttcgcatgct 29555



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>emb|BX255965.12| Zebrafish DNA sequence from clone CH211-270C19, complete sequence
          Length = 148298

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 314  agcaacgctgctcttcacatt 334
            |||||||||||||||||||||
Sbjct: 4974 agcaacgctgctcttcacatt 4994



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>emb|BX649457.15| Zebrafish DNA sequence from clone DKEYP-87E7 in linkage group 22,
             complete sequence
          Length = 159207

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 149   caaggaaaaaatattaagaaa 169
             |||||||||||||||||||||
Sbjct: 46798 caaggaaaaaatattaagaaa 46778



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>gb|AC130671.7| Mus musculus chromosome 15, clone RP24-90K19, complete sequence
          Length = 205646

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 479    tgcagattctgtgaactgca 498
              ||||||||||||||||||||
Sbjct: 147005 tgcagattctgtgaactgca 146986



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>gb|AC104516.2| Drosophila melanogaster clone BACR20O17, complete sequence
          Length = 174404

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   atgtctcgtttttaccgttt 392
             ||||||||||||||||||||
Sbjct: 42647 atgtctcgtttttaccgttt 42628



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>gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, complete sequence
          Length = 194380

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 146   ttccaaggaaaaaatattaagaaa 169
             ||||||||||||||||| ||||||
Sbjct: 42422 ttccaaggaaaaaatatgaagaaa 42445



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>ref|XM_865972.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
           (MDR/TAP), member 9 isoform 2, transcript variant 3
           (LOC529923), mRNA
          Length = 2313

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 tgaagctgctgctcttctcc 138
           ||||||||||||||||||||
Sbjct: 296 tgaagctgctgctcttctcc 315



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>ref|XM_608385.2| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
           (MDR/TAP), member 9 isoform 2, transcript variant 2
           (LOC529923), mRNA
          Length = 2184

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 tgaagctgctgctcttctcc 138
           ||||||||||||||||||||
Sbjct: 296 tgaagctgctgctcttctcc 315



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>ref|XM_877301.1| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
           (MDR/TAP), member 9 isoform 2, transcript variant 4
           (LOC529923), mRNA
          Length = 2340

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 tgaagctgctgctcttctcc 138
           ||||||||||||||||||||
Sbjct: 296 tgaagctgctgctcttctcc 315



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>gb|BC072233.1| Xenopus laevis hypothetical protein MGC81517, mRNA (cDNA clone
            MGC:81517 IMAGE:6637322), complete cds
          Length = 3425

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    actgctgttgctcgttccaa 21
            ||||||||||||||||||||
Sbjct: 3043 actgctgttgctcgttccaa 3024



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>gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, complete sequence
          Length = 196843

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 320    gctgctcttcacattttgct 339
              ||||||||||||||||||||
Sbjct: 126157 gctgctcttcacattttgct 126138



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>ref|XM_853575.1| PREDICTED: Canis familiaris similar to ATP-binding cassette,
           sub-family B (MDR/TAP), member 9 isoform 2, transcript
           variant 4 (LOC477456), mRNA
          Length = 2505

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 tgaagctgctgctcttctcc 138
           ||||||||||||||||||||
Sbjct: 500 tgaagctgctgctcttctcc 519



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>ref|XM_534654.2| PREDICTED: Canis familiaris similar to ATP-binding cassette,
           sub-family B (MDR/TAP), member 9 isoform 2, transcript
           variant 1 (LOC477456), mRNA
          Length = 2376

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 tgaagctgctgctcttctcc 138
           ||||||||||||||||||||
Sbjct: 500 tgaagctgctgctcttctcc 519



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>ref|XM_844280.1| PREDICTED: Canis familiaris similar to ATP-binding cassette,
           sub-family B (MDR/TAP), member 9 isoform 2, transcript
           variant 3 (LOC477456), mRNA
          Length = 2532

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 tgaagctgctgctcttctcc 138
           ||||||||||||||||||||
Sbjct: 500 tgaagctgctgctcttctcc 519



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>emb|CR848816.11| Zebrafish DNA sequence from clone DKEY-99F10 in linkage group 11,
              complete sequence
          Length = 158354

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 536    ttcttgatcagcgttttcagactt 559
              ||||||||||||||||||| ||||
Sbjct: 118919 ttcttgatcagcgttttcacactt 118896



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>gb|AC139209.10| Mus musculus chromosome 15, clone RP23-153G2, complete sequence
          Length = 211178

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   aaggaaaaaatattaagaaa 169
             ||||||||||||||||||||
Sbjct: 22941 aaggaaaaaatattaagaaa 22922



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>gb|AC110238.10| Mus musculus chromosome 5, clone RP23-106D12, complete sequence
          Length = 197964

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 146   ttccaaggaaaaaatattaagaaa 169
             ||||||||||||||||| ||||||
Sbjct: 11400 ttccaaggaaaaaatatgaagaaa 11377



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>gb|AC122161.26| Medicago truncatula clone mth2-11l3, complete sequence
          Length = 118625

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 143   gtattccaaggaaaaaatattaag 166
             |||||||||||||||||| |||||
Sbjct: 27191 gtattccaaggaaaaaattttaag 27214



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>gb|AC122171.21| Medicago truncatula clone mth2-23b18, complete sequence
          Length = 125865

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 143   gtattccaaggaaaaaatattaag 166
             |||||||||||||||||| |||||
Sbjct: 90882 gtattccaaggaaaaaattttaag 90859



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>emb|AL445219.14| Human DNA sequence from clone RP11-71L7 on chromosome 13 Contains a
             novel gene, complete sequence
          Length = 103728

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   atcagtattccaaggaaaaa 158
             ||||||||||||||||||||
Sbjct: 47242 atcagtattccaaggaaaaa 47223



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>emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on chromosome 10 Contains part
              of the PARD3 gene for par-3 partitioning defective 3
              homolog (C.elegans), complete sequence
          Length = 193131

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 320    gctgctcttcacattttgct 339
              ||||||||||||||||||||
Sbjct: 122764 gctgctcttcacattttgct 122745



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>emb|AL359828.13| Human DNA sequence from clone RP5-954P9 on chromosome 20 Contains the
            3' end of the C20orf152 gene and a CpG island, complete
            sequence
          Length = 38545

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  tattccaaggaaaaaatatt 163
            ||||||||||||||||||||
Sbjct: 8197 tattccaaggaaaaaatatt 8178



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>emb|BX571949.19| Zebrafish DNA sequence from clone DKEY-25F1 in linkage group 11,
             complete sequence
          Length = 149012

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 536   ttcttgatcagcgttttcagactt 559
             ||||||||||||||||||| ||||
Sbjct: 67395 ttcttgatcagcgttttcacactt 67418



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>gb|AC161575.3| Mus musculus chromosome 15, clone RP24-264K6, complete sequence
          Length = 164213

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   aaggaaaaaatattaagaaa 169
             ||||||||||||||||||||
Sbjct: 23018 aaggaaaaaatattaagaaa 22999



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>emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 in linkage group 5,
              complete sequence
          Length = 142908

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    tctagatatttgatttgatg 248
              ||||||||||||||||||||
Sbjct: 119377 tctagatatttgatttgatg 119358



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>gb|AC087429.2| Homo sapiens chromosome 3 clone 2063K18 map 3p, complete sequence
          Length = 88688

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 142   agtattccaaggaaaaaatattaagaaa 169
             |||||||||||||||||| ||| |||||
Sbjct: 17332 agtattccaaggaaaaaaaattgagaaa 17305



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>gb|AC064805.13| Homo sapiens chromosome 17, clone CTD-2006K23, complete sequence
          Length = 87833

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   atgaagctgctgctcttctc 137
             ||||||||||||||||||||
Sbjct: 84973 atgaagctgctgctcttctc 84954



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>ref|XM_627943.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd1_970),
           partial mRNA
          Length = 2502

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 146 ttccaaggaaaaaatattaa 165
           ||||||||||||||||||||
Sbjct: 966 ttccaaggaaaaaatattaa 985



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>gb|AC158955.2| Mus musculus chromosome 15, clone RP23-22C17, complete sequence
          Length = 256999

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 479   tgcagattctgtgaactgca 498
             ||||||||||||||||||||
Sbjct: 86103 tgcagattctgtgaactgca 86084



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 151     aggaaaaaatattaagaaac 170
               ||||||||||||||||||||
Sbjct: 7050069 aggaaaaaatattaagaaac 7050050



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>gb|AC157089.5| Mus musculus 10 BAC RP24-339G14 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 160723

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 469   cctttgctcttgcagattctgtga 492
             |||||||||||||||| |||||||
Sbjct: 38112 cctttgctcttgcagactctgtga 38135



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>gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, complete sequence
          Length = 163597

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   atgaagctgctgctcttctc 137
             ||||||||||||||||||||
Sbjct: 46103 atgaagctgctgctcttctc 46084



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>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0452F10
          Length = 145120

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   aggaaaaaatattaagaaac 170
             ||||||||||||||||||||
Sbjct: 37649 aggaaaaaatattaagaaac 37630



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>emb|CT010479.25| Mouse DNA sequence from clone RP23-233G23 on chromosome 17, complete
              sequence
          Length = 203311

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    aaggaaaaaatattaagaaa 169
              ||||||||||||||||||||
Sbjct: 142524 aaggaaaaaatattaagaaa 142543



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>gb|AE003510.5| Drosophila melanogaster chromosome X, section 62 of 74 of the complete
              sequence
          Length = 297236

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    atgtctcgtttttaccgttt 392
              ||||||||||||||||||||
Sbjct: 217322 atgtctcgtttttaccgttt 217303



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>dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-344L21, complete
              sequence
          Length = 186656

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    cttctagatatttgatttga 246
              ||||||||||||||||||||
Sbjct: 110819 cttctagatatttgatttga 110800



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>gb|AC087431.3| Homo sapiens chromosome 3 clone RP11-775C23 map 3p, complete sequence
          Length = 196745

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 142    agtattccaaggaaaaaatattaagaaa 169
              |||||||||||||||||| ||| |||||
Sbjct: 144471 agtattccaaggaaaaaaaattgagaaa 144444


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,561,073
Number of Sequences: 3902068
Number of extensions: 6561073
Number of successful extensions: 125281
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124856
Number of HSP's gapped (non-prelim): 417
length of query: 626
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 603
effective length of database: 17,143,297,704
effective search space: 10337408515512
effective search space used: 10337408515512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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