ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20i12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107932.1| Zea mays PCO078506 mRNA sequence 361 2e-96
2dbj|AK106188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 339 6e-90
3dbj|AK104453.1| Oryza sativa (japonica cultivar-group) cDNA clon... 339 6e-90
4dbj|AK099185.1| Oryza sativa (japonica cultivar-group) cDNA clon... 339 6e-90
5dbj|AK060020.1| Oryza sativa (japonica cultivar-group) cDNA clon... 339 6e-90
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 281 1e-72
7dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic D... 281 1e-72
8dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic D... 281 1e-72
9emb|AJ620335.1| Oryza sativa (indica cultivar-group) mRNA for E3... 48 0.030
10emb|AJ867287.1| Oryza sativa (indica cultivar-group) mRNA for ub... 48 0.030
11ref|NM_102289.3| Arabidopsis thaliana ubiquitin-protein ligase/ ... 44 0.47
12gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.47
13gb|AC148822.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.47
14gb|BT000927.1| Arabidopsis thaliana clone C105129 unknown protei... 44 0.47
15gb|AY080767.1| Arabidopsis thaliana At1g24440 mRNA sequence 44 0.47
16dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.47
17emb|BX813355.1|CNS0ACCH Arabidopsis thaliana Full-length cDNA Co... 44 0.47
18emb|BX816924.1|CNS0ABVB Arabidopsis thaliana Full-length cDNA Co... 44 0.47
19gb|AY085533.1| Arabidopsis thaliana clone 156298 mRNA, complete ... 44 0.47
20gb|AC000103.2|AC000103 Genomic sequence for Arabidopsis thaliana... 44 0.47
21gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.47
22gb|AC121767.3| Mus musculus BAC clone RP23-339E1 from chromosome... 42 1.9
23gb|AC118928.13| Mus musculus chromosome 16, clone RP23-416J10, c... 42 1.9
24emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genom... 42 1.9
25gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosom... 42 1.9
26gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.9
27ref|XM_477429.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.4
28gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, com... 40 7.4
29gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.4
30gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosom... 40 7.4
31emb|CT010495.9| Mouse DNA sequence from clone RP23-226G14 on chr... 40 7.4
32gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, comple... 40 7.4
33gb|BC043890.1| Xenopus laevis chondromodulin-I precursor, mRNA (... 40 7.4
34emb|CR956420.2| Pig DNA sequence from clone CH242-37G9 on chromo... 40 7.4
35emb|AL669904.1| Human DNA sequence from clone RP5-1054G24 on chr... 40 7.4
36gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 7.4
37emb|AL445672.15| Human DNA sequence from clone RP11-66D1 on chro... 40 7.4
38emb|AL445645.10| Human DNA sequence from clone RP11-295G24 on ch... 40 7.4
39emb|AL356503.18| Human DNA sequence from clone RP13-159A24 on ch... 40 7.4
40gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 7.4
41emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete ... 40 7.4
42emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 40 7.4
43emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 40 7.4
44emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 40 7.4
45gb|AC113029.23| Mus musculus chromosome 5, clone RP23-206J17, co... 40 7.4
46gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.4
47gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 7.4
48dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
49dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
50ref|XM_577795.1| PREDICTED: Rattus norvegicus similar to LRRGT00... 40 7.4
51dbj|AP005475.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
52dbj|AP005673.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
53gb|AC154423.2| Mus musculus BAC clone RP24-221B7 from 17, comple... 40 7.4
54emb|CT806423.2| Pan troglodytes chromosome X clone CH251-25B01 m... 40 7.4
55gb|AC107776.12| Mus musculus chromosome 17, clone RP23-92G2, com... 40 7.4
56emb|CR956387.14| Pig DNA sequence from clone CH242-148I13 on chr... 40 7.4 
>gb|AY107932.1| Zea mays PCO078506 mRNA sequence
          Length = 920

 Score =  361 bits (182), Expect = 2e-96
 Identities = 233/250 (93%)
 Strand = Plus / Minus

                                                                       
Query: 287 gctagactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggc 346
           |||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 539 gctagactaggtagtcgtagtagaccagcagcatgttgtcggggacgatcaggggcaggc 480

                                                                       
Query: 347 tgtcgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatca 406
           |||||||||||||| |||||||| ||||||||||||||||||| ||||| | ||||||||
Sbjct: 479 tgtcgatgaagctgaggaagtgcttcacgttctccttctccagcgtcaccgtgtcgatca 420

                                                                       
Query: 407 cgtcgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgc 466
           ||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||
Sbjct: 419 cgtcgtcgtcgccggtgagcacccacaggtctctggaccggaccctcttcaggctcccgc 360

                                                                       
Query: 467 ggcagaaagggcacgactgagaccttgtgtaccaatctcggtaacagttgatgcacatgg 526
           ||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 359 ggcagaacgggcatgactgggaccttgtgtaccagtctcggtaacagttgatgcacatgg 300

                     
Query: 527 catggttgca 536
           ||||||||||
Sbjct: 299 catggttgca 290



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 41/45 (91%), Gaps = 2/45 (4%)
 Strand = Plus / Minus

                                                        
Query: 184 cggcttcgctt-gccagactcgatctgcggaggatggtcggctgc 227
           ||||||||||| |||| |||||||| || ||||||||||||||||
Sbjct: 674 cggcttcgctttgcca-actcgatccgcagaggatggtcggctgc 631
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>dbj|AK106188.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D10, full
           insert sequence
          Length = 1173

 Score =  339 bits (171), Expect = 6e-90
 Identities = 228/247 (92%)
 Strand = Plus / Minus

                                                                       
Query: 290 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 349
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 951 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 892

                                                                       
Query: 350 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 409
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 891 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 832

                                                                       
Query: 410 cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 469
           ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 831 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 772

                                                                       
Query: 470 agaaagggcacgactgagaccttgtgtaccaatctcggtaacagttgatgcacatggcat 529
           |||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 771 agaacgggcatgactgagatcttgtgtaccagtctcgataacagttgatgcacatggcat 712

                  
Query: 530 ggttgca 536
           |||||||
Sbjct: 711 ggttgca 705



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 188  ttcgcttgccagactcgatctgcggaggatggtcggctgcc 228
            |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 1053 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1013
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>dbj|AK104453.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H10, full
           insert sequence
          Length = 1290

 Score =  339 bits (171), Expect = 6e-90
 Identities = 228/247 (92%)
 Strand = Plus / Minus

                                                                       
Query: 290 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 349
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 951 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 892

                                                                       
Query: 350 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 409
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 891 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 832

                                                                       
Query: 410 cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 469
           ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 831 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 772

                                                                       
Query: 470 agaaagggcacgactgagaccttgtgtaccaatctcggtaacagttgatgcacatggcat 529
           |||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 771 agaacgggcatgactgagatcttgtgtaccagtctcgataacagttgatgcacatggcat 712

                  
Query: 530 ggttgca 536
           |||||||
Sbjct: 711 ggttgca 705



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 188  ttcgcttgccagactcgatctgcggaggatggtcggctgcc 228
            |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 1053 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1013
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>dbj|AK099185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105K15, full
           insert sequence
          Length = 1291

 Score =  339 bits (171), Expect = 6e-90
 Identities = 228/247 (92%)
 Strand = Plus / Minus

                                                                       
Query: 290 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 349
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 952 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 893

                                                                       
Query: 350 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 409
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 892 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 833

                                                                       
Query: 410 cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 469
           ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 832 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 773

                                                                       
Query: 470 agaaagggcacgactgagaccttgtgtaccaatctcggtaacagttgatgcacatggcat 529
           |||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 772 agaacgggcatgactgagatcttgtgtaccagtctcgataacagttgatgcacatggcat 713

                  
Query: 530 ggttgca 536
           |||||||
Sbjct: 712 ggttgca 706



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 188  ttcgcttgccagactcgatctgcggaggatggtcggctgcc 228
            |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 1054 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1014
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>dbj|AK060020.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-G11, full
           insert sequence
          Length = 1296

 Score =  339 bits (171), Expect = 6e-90
 Identities = 228/247 (92%)
 Strand = Plus / Minus

                                                                       
Query: 290 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 349
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 951 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 892

                                                                       
Query: 350 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 409
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 891 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 832

                                                                       
Query: 410 cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 469
           ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 831 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 772

                                                                       
Query: 470 agaaagggcacgactgagaccttgtgtaccaatctcggtaacagttgatgcacatggcat 529
           |||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 771 agaacgggcatgactgagatcttgtgtaccagtctcgataacagttgatgcacatggcat 712

                  
Query: 530 ggttgca 536
           |||||||
Sbjct: 711 ggttgca 705



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 188  ttcgcttgccagactcgatctgcggaggatggtcggctgcc 228
            |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 1053 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1013
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  281 bits (142), Expect = 1e-72
 Identities = 193/210 (91%)
 Strand = Plus / Minus

                                                                            
Query: 290      agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 349
                ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 39425338 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 39425279

                                                                            
Query: 350      cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 409
                ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 39425278 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 39425219

                                                                            
Query: 410      cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 469
                ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 39425218 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 39425159

                                              
Query: 470      agaaagggcacgactgagaccttgtgtacc 499
                |||| ||||| |||||||| ||||||||||
Sbjct: 39425158 agaacgggcatgactgagatcttgtgtacc 39425129



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                         
Query: 496      taccaatctcggtaacagttgatgcacatggcatggttgca 536
                ||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 39423490 taccagtctcgataacagttgatgcacatggcatggttgca 39423450



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                         
Query: 188      ttcgcttgccagactcgatctgcggaggatggtcggctgcc 228
                |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 39425440 ttcgctagccagactcaatctgcagaggatggtcggctgcc 39425400
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>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           BAC clone:B1417F08
          Length = 155536

 Score =  281 bits (142), Expect = 1e-72
 Identities = 193/210 (91%)
 Strand = Plus / Minus

                                                                       
Query: 290 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 349
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 352 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 293

                                                                       
Query: 350 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 409
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 292 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 233

                                                                       
Query: 410 cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 469
           ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 232 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 173

                                         
Query: 470 agaaagggcacgactgagaccttgtgtacc 499
           |||| ||||| |||||||| ||||||||||
Sbjct: 172 agaacgggcatgactgagatcttgtgtacc 143



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 188 ttcgcttgccagactcgatctgcggaggatggtcggctgcc 228
           |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 454 ttcgctagccagactcaatctgcagaggatggtcggctgcc 414
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>dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             fosmid clone:OSJNOa108M02
          Length = 38208

 Score =  281 bits (142), Expect = 1e-72
 Identities = 193/210 (91%)
 Strand = Plus / Minus

                                                                         
Query: 290   agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 349
             ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 35862 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 35803

                                                                         
Query: 350   cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 409
             ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 35802 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 35743

                                                                         
Query: 410   cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 469
             ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 35742 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 35683

                                           
Query: 470   agaaagggcacgactgagaccttgtgtacc 499
             |||| ||||| |||||||| ||||||||||
Sbjct: 35682 agaacgggcatgactgagatcttgtgtacc 35653



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                      
Query: 496   taccaatctcggtaacagttgatgcacatggcatggttgca 536
             ||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 34014 taccagtctcgataacagttgatgcacatggcatggttgca 33974



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 188   ttcgcttgccagactcgatctgcggaggatggtcggctgcc 228
             |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 35964 ttcgctagccagactcaatctgcagaggatggtcggctgcc 35924
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>emb|AJ620335.1| Oryza sativa (indica cultivar-group) mRNA for E3 ubiquitin ligase
           (ubl gene)
          Length = 762

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 421 gtgagcacccacaggtccctggactggactctcttcaggcttccgcggcagaaagggcac 480
           |||||||||||||||||||| ||  | | ||  || |||||||| |||||||||||||| 
Sbjct: 629 gtgagcacccacaggtcccttgagcgaattcgtttaaggcttcctcggcagaaagggcaa 570

               
Query: 481 gact 484
           ||||
Sbjct: 569 gact 566
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>emb|AJ867287.1| Oryza sativa (indica cultivar-group) mRNA for ubiquitin ligase E3
           (ubl gene)
          Length = 762

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 421 gtgagcacccacaggtccctggactggactctcttcaggcttccgcggcagaaagggcac 480
           |||||||||||||||||||| ||  | | ||  || |||||||| |||||||||||||| 
Sbjct: 629 gtgagcacccacaggtcccttgagcgaattcgtttaaggcttcctcggcagaaagggcaa 570

               
Query: 481 gact 484
           ||||
Sbjct: 569 gact 566
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>ref|NM_102289.3| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding
           AT1G24440 mRNA, complete cds
          Length = 1264

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 505 cggtaacagttgatgcacatggcatg 530
           |||||||| |||||||||||||||||
Sbjct: 860 cggtaacatttgatgcacatggcatg 835
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>gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0004O15
              map near R3342S, complete sequence
          Length = 140142

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 6      gttcttttttaattatagcttg 27
              ||||||||||||||||||||||
Sbjct: 124490 gttcttttttaattatagcttg 124469
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>gb|AC148822.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0036K13
              map near R3342S, complete sequence
          Length = 135684

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 6      gttcttttttaattatagcttg 27
              ||||||||||||||||||||||
Sbjct: 133610 gttcttttttaattatagcttg 133631
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>gb|BT000927.1| Arabidopsis thaliana clone C105129 unknown protein (At1g24440)
           mRNA, complete cds
          Length = 787

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 505 cggtaacagttgatgcacatggcatg 530
           |||||||| |||||||||||||||||
Sbjct: 539 cggtaacatttgatgcacatggcatg 514
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>gb|AY080767.1| Arabidopsis thaliana At1g24440 mRNA sequence
          Length = 1842

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 505  cggtaacagttgatgcacatggcatg 530
            |||||||| |||||||||||||||||
Sbjct: 1421 cggtaacatttgatgcacatggcatg 1396
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 6        gttcttttttaattatagcttg 27
                ||||||||||||||||||||||
Sbjct: 27597483 gttcttttttaattatagcttg 27597504
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>emb|BX813355.1|CNS0ACCH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB11ZF08 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1341

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 505  cggtaacagttgatgcacatggcatg 530
            |||||||| |||||||||||||||||
Sbjct: 1151 cggtaacatttgatgcacatggcatg 1126
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>emb|BX816924.1|CNS0ABVB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH77ZB07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1275

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 505 cggtaacagttgatgcacatggcatg 530
           |||||||| |||||||||||||||||
Sbjct: 955 cggtaacatttgatgcacatggcatg 930
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>gb|AY085533.1| Arabidopsis thaliana clone 156298 mRNA, complete sequence
          Length = 1179

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 505 cggtaacagttgatgcacatggcatg 530
           |||||||| |||||||||||||||||
Sbjct: 805 cggtaacatttgatgcacatggcatg 780
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>gb|AC000103.2|AC000103 Genomic sequence for Arabidopsis thaliana BAC F21J9 from chromosome I,
             complete sequence
          Length = 99392

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 505   cggtaacagttgatgcacatggcatg 530
             |||||||| |||||||||||||||||
Sbjct: 24387 cggtaacatttgatgcacatggcatg 24362
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 6        gttcttttttaattatagcttg 27
                ||||||||||||||||||||||
Sbjct: 27621471 gttcttttttaattatagcttg 27621492
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>gb|AC121767.3| Mus musculus BAC clone RP23-339E1 from chromosome 1, complete sequence
          Length = 184736

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2     acctgttcttttttaattata 22
             |||||||||||||||||||||
Sbjct: 65161 acctgttcttttttaattata 65181
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>gb|AC118928.13| Mus musculus chromosome 16, clone RP23-416J10, complete sequence
          Length = 238516

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 87     cttcttcttctgtacacttat 107
              |||||||||||||||||||||
Sbjct: 188610 cttcttcttctgtacacttat 188630
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>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 400    tcgatcacgtcgtcgtcgccg 420
              |||||||||||||||||||||
Sbjct: 223026 tcgatcacgtcgtcgtcgccg 223006
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>gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosome 16, complete sequence
          Length = 181697

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 87     cttcttcttctgtacacttat 107
              |||||||||||||||||||||
Sbjct: 168860 cttcttcttctgtacacttat 168840
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 397     gggtcgatcacgtcgtcgtcg 417
               |||||||||||||||||||||
Sbjct: 1343975 gggtcgatcacgtcgtcgtcg 1343995
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>ref|XM_477429.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1107

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 457 aggcttccgcggcagaaagggcacgact 484
           |||||||| |||||||||||||| ||||
Sbjct: 754 aggcttcctcggcagaaagggcaagact 727
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>gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, complete sequence
          Length = 248320

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    atgaagctgtggaagtgcct 371
              ||||||||||||||||||||
Sbjct: 222590 atgaagctgtggaagtgcct 222609
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 343      aggctgtcgatgaagctgtggaag 366
                |||||||||||| |||||||||||
Sbjct: 12900182 aggctgtcgatgtagctgtggaag 12900159
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>gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosome 1, complete sequence
          Length = 200595

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 422    tgagcacccacaggtccctg 441
              ||||||||||||||||||||
Sbjct: 168559 tgagcacccacaggtccctg 168540
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>emb|CT010495.9| Mouse DNA sequence from clone RP23-226G14 on chromosome 17, complete
              sequence
          Length = 202526

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 81     caaacacttcttcttctgtacacttatt 108
              ||||||||| ||||| ||||||||||||
Sbjct: 191651 caaacacttattcttatgtacacttatt 191678
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>gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, complete sequence
          Length = 203739

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 422   tgagcacccacaggtccctg 441
             ||||||||||||||||||||
Sbjct: 34929 tgagcacccacaggtccctg 34910
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>gb|BC043890.1| Xenopus laevis chondromodulin-I precursor, mRNA (cDNA clone
           MGC:53801 IMAGE:5542016), complete cds
          Length = 1434

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 cgatgaagctgtggaagtgc 369
           ||||||||||||||||||||
Sbjct: 351 cgatgaagctgtggaagtgc 370
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>emb|CR956420.2| Pig DNA sequence from clone CH242-37G9 on chromosome 17, complete
            sequence
          Length = 65276

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 51   aacaagtaaaaaccttcacc 70
            ||||||||||||||||||||
Sbjct: 5094 aacaagtaaaaaccttcacc 5075
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>emb|AL669904.1| Human DNA sequence from clone RP5-1054G24 on chromosome Xq22.1-24
            Contains part of a novel gene, complete sequence
          Length = 5270

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   attatagcttggcatttgcc 36
            ||||||||||||||||||||
Sbjct: 4002 attatagcttggcatttgcc 4021
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 395     cggggtcgatcacgtcgtcg 414
               ||||||||||||||||||||
Sbjct: 3549017 cggggtcgatcacgtcgtcg 3548998
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>emb|AL445672.15| Human DNA sequence from clone RP11-66D1 on chromosome 9, complete
             sequence
          Length = 113031

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   cctcacgttctccttctcca 388
             ||||||||||||||||||||
Sbjct: 77755 cctcacgttctccttctcca 77736
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>emb|AL445645.10| Human DNA sequence from clone RP11-295G24 on chromosome 9 Contains
            the TSC1 gene for tuberous sclerosis 1, the C9orf9 gene
            for chromosome 9 open reading frame 9 protein, the 5' end
            of gene FLJ32704, two novel gene, the 5' end of a novel
            gene and three CpG islands, complete sequence
          Length = 199113

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 17   attatagcttggcatttgcc 36
            ||||||||||||||||||||
Sbjct: 7477 attatagcttggcatttgcc 7458
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>emb|AL356503.18| Human DNA sequence from clone RP13-159A24 on chromosome Xq27.1-28,
             complete sequence
          Length = 147043

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   aaagccagagcaacaaataa 149
             ||||||||||||||||||||
Sbjct: 12145 aaagccagagcaacaaataa 12126
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 398     ggtcgatcacgtcgtcgtcg 417
               ||||||||||||||||||||
Sbjct: 2378644 ggtcgatcacgtcgtcgtcg 2378625
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>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  gggcaggctgtcgatgaagc 358
            ||||||||||||||||||||
Sbjct: 3496 gggcaggctgtcgatgaagc 3515
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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    gggcaggctgtcgatgaagc 358
              ||||||||||||||||||||
Sbjct: 116713 gggcaggctgtcgatgaagc 116732
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>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    gggcaggctgtcgatgaagc 358
              ||||||||||||||||||||
Sbjct: 111837 gggcaggctgtcgatgaagc 111856
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>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 405   cacgtcgtcgtcgccggtgagcac 428
             ||||||||||| ||||||||||||
Sbjct: 27385 cacgtcgtcgtggccggtgagcac 27362
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>gb|AC113029.23| Mus musculus chromosome 5, clone RP23-206J17, complete sequence
          Length = 223809

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 352    atgaagctgtggaagtgcct 371
              ||||||||||||||||||||
Sbjct: 178302 atgaagctgtggaagtgcct 178283
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>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0094H06, from chromosome 3, complete sequence
          Length = 118075

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 343   aggctgtcgatgaagctgtggaag 366
             |||||||||||| |||||||||||
Sbjct: 39327 aggctgtcgatgtagctgtggaag 39350
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete
              genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 407    cgtcgtcgtcgccggtgagc 426
              ||||||||||||||||||||
Sbjct: 446772 cgtcgtcgtcgccggtgagc 446791
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 457      aggcttccgcggcagaaagggcacgact 484
                |||||||| |||||||||||||| ||||
Sbjct: 10309699 aggcttcctcggcagaaagggcaagact 10309672
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 343      aggctgtcgatgaagctgtggaag 366
                |||||||||||| |||||||||||
Sbjct: 12896945 aggctgtcgatgtagctgtggaag 12896922
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>ref|XM_577795.1| PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC502330), mRNA
          Length = 4653

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 178  cggccccggcttcgcttgcc 197
            ||||||||||||||||||||
Sbjct: 4559 cggccccggcttcgcttgcc 4540
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>dbj|AP005475.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0091L05
          Length = 173983

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 457   aggcttccgcggcagaaagggcacgact 484
             |||||||| |||||||||||||| ||||
Sbjct: 20879 aggcttcctcggcagaaagggcaagact 20852
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>dbj|AP005673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1029H08
          Length = 137050

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 457    aggcttccgcggcagaaagggcacgact 484
              |||||||| |||||||||||||| ||||
Sbjct: 131618 aggcttcctcggcagaaagggcaagact 131591
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>gb|AC154423.2| Mus musculus BAC clone RP24-221B7 from 17, complete sequence
          Length = 172011

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 81    caaacacttcttcttctgtacacttatt 108
             ||||||||| ||||| ||||||||||||
Sbjct: 35208 caaacacttattcttatgtacacttatt 35181
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>emb|CT806423.2| Pan troglodytes chromosome X clone CH251-25B01 map Xq28, complete
              sequence
          Length = 220032

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    aaagccagagcaacaaataa 149
              ||||||||||||||||||||
Sbjct: 108625 aaagccagagcaacaaataa 108606
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>gb|AC107776.12| Mus musculus chromosome 17, clone RP23-92G2, complete sequence
          Length = 147077

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 81    caaacacttcttcttctgtacacttatt 108
             ||||||||| ||||| ||||||||||||
Sbjct: 97213 caaacacttattcttatgtacacttatt 97186
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>emb|CR956387.14| Pig DNA sequence from clone CH242-148I13 on chromosome 17, complete
            sequence
          Length = 66802

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 51   aacaagtaaaaaccttcacc 70
            ||||||||||||||||||||
Sbjct: 5094 aacaagtaaaaaccttcacc 5075


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,299,899
Number of Sequences: 3902068
Number of extensions: 5299899
Number of successful extensions: 94658
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94054
Number of HSP's gapped (non-prelim): 604
length of query: 543
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 520
effective length of database: 17,143,297,704
effective search space: 8914514806080
effective search space used: 8914514806080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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